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2672 Commits

Author SHA1 Message Date
Ricardo Wurmus
d044d62102
gnu: r-stringdb: Update to 2.8.4. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.8.4.
 2022-05-28 23:19:16 +02:00
Ricardo Wurmus
ed19cbbf15
gnu: r-stager: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.18.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
8d1ab3f57d
gnu: r-slingshot: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
3f873a27e0
gnu: r-trajectoryutils: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.4.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
909d580b9a
gnu: r-transcriptr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.24.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
9b935eaa56
gnu: r-simplifyenrichment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.0.
[propagated-inputs]: Add r-colorspace and r-globaloptions.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
6d2b2e0ad9
gnu: r-shortread: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.54.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
27588f020d
gnu: r-seqpattern: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.28.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
5346b424cc
gnu: r-seqlogo: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.62.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
a260fc5a90
gnu: r-scdblfinder: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.10.0.
[propagated-inputs]: Add r-genomeinfodb, r-genomicranges, r-iranges, r-rsamtools, and
r-rtracklayer.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
021ab21b57
gnu: r-scannotatr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
 2022-05-28 23:19:15 +02:00
Ricardo Wurmus
ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
3c31e7e249
gnu: r-rhdf5: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
21669d75f6
gnu: r-regioner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
9d05a948ea
gnu: r-rcas: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
1a873db6b2
gnu: r-rbgl: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
d4201b5f61
gnu: r-pcamethods: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
 2022-05-28 23:19:14 +02:00
Ricardo Wurmus
e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d1134b61fd
gnu: r-mzr: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
3eb763c2ba
gnu: r-mzid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d6fe1e2d12
gnu: r-msnid: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d6f683b561
gnu: r-msnbase: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
56741afedd
gnu: r-methylkit: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
0cb9ffc4e3
gnu: r-limma: Update to 3.52.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
cb17da65a5
gnu: r-lfa: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
2a3372953d
gnu: r-keggrest: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
 2022-05-28 23:19:13 +02:00
Ricardo Wurmus
a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
cd9b5f0029
gnu: r-impute: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
3daf94f147
gnu: r-hpar: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.38.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
3e1dbcb3bf
gnu: r-gseabase: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.58.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
5c3a303d30
gnu: r-gostats: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.62.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
bf93ff28c5
gnu: r-genomicranges: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.48.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
d14aeab8b8
gnu: r-genomicfiles: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.32.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
fa516541c3
gnu: r-genomicfeatures: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.1.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
1a04133411
gnu: r-genomicalignments: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.0.
 2022-05-28 23:19:12 +02:00
Ricardo Wurmus
4966e9e925
gnu: r-genomeinfodb: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.2.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
09ae595016
gnu: r-genomation: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.28.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
b755e0d623
gnu: r-geneoverlap: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.32.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
cb6e76dc63
gnu: r-genefilter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.78.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
3fd4c8f29f
gnu: r-gage: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
b604766021
gnu: r-fastseg: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.42.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
89b669ba0e
gnu: r-ensembldb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
9d030069d4
gnu: r-edger: Update to 3.38.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.1.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
1d19d45fe7
gnu: r-edaseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.30.0.
 2022-05-28 23:19:11 +02:00
Ricardo Wurmus
12a8b7bca3
gnu: r-dirichletmultinomial: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.38.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
380384a209
gnu: r-diffcyt: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.16.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
ea0c72bed0
gnu: r-dexseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.42.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
a83d8ee1eb
gnu: r-deseq2: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.36.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d29abfbd40
gnu: r-copywriter: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.28.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d15ab4ed30
gnu: r-complexheatmap: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.0.
[propagated-inputs]: Add r-codetools.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d66077a5ad
gnu: r-chipseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.46.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
5e9e69ccd8
gnu: r-chipseeker: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
b7f95b40a8
gnu: r-category: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.62.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
417481b3b0
gnu: r-bsgenome: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.64.0.
 2022-05-28 23:19:10 +02:00
Ricardo Wurmus
6479274a0b
gnu: r-biovizbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.44.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
e56181a34e
gnu: r-biocparallel: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.2.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
48ca8c8026
gnu: r-biomart: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.52.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
70b29256f6
gnu: r-biobase: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.56.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
4d9011c00b
gnu: r-bamsignals: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.28.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
043b388f38
gnu: r-aroma-light: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.26.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
0b2579cbe0
gnu: r-annotationhub: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.4.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
282985f6c3
gnu: r-annotationforge: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
3db3797305
gnu: r-annotationfilter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.20.0.
 2022-05-28 23:19:09 +02:00
Ricardo Wurmus
0dcb2df4e1
gnu: r-annotationdbi: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.58.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
2563aeb416
gnu: r-annotate: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
b928f25f51
gnu: r-affxparser: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
da1e879b9b
gnu: r-affyio: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.66.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
fb1fb2b8c2
gnu: r-affycoretools: Update to 1.68.1. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.68.1.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
d4af958ae8
gnu: r-affycontam: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.54.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
83f8f3ae08
gnu: r-affycompatible: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.56.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
45a6d9c0f4
gnu: r-affycomp: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.72.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
429e687e69
gnu: r-affy: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
a15c457c59
gnu: r-isoformswitchanalyzer: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
 2022-05-28 23:19:08 +02:00
Ricardo Wurmus
285b5cb7fa
gnu: r-iranges: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
48c3389314
gnu: r-ideoviz: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
051b7e63f2
gnu: r-bluster: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
59fff0e2d2
gnu: r-drimseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
cea1b9029a
gnu: r-derfinderhelper: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
a2173119ec
gnu: r-delayedarray: Update to 0.22.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
d15f46c5cf
gnu: r-deepsnv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
7149e667c1
gnu: r-decipher: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
25847e60fe
gnu: r-dearseq: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
6f0430cdc2
gnu: r-coverageview: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
00d51727e5
gnu: r-biocgenerics: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
b19400063e
gnu: r-biocversion: Update to 3.15.2. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
75628fc7ce
gnu: r-aneufinder: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
a5e1a37cdf
gnu: r-agilp: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
6e1d256151
gnu: r-agdex: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
f4a85d5555
gnu: r-affixcan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
3e524e46a0
gnu: r-adsplit: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
3a29b78fa9
gnu: r-adimpute: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
69dc67d9aa
gnu: r-adam: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
5911a8992b
gnu: r-absseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
67d858b97c
gnu: r-abarray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
90d165ea86
gnu: r-biostrings: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
413133e430
gnu: Add r-decoupler. 
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
d723619fc3
gnu: r-biostrings: Patch for R 4.2.0. 
* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase
'patch-for-R-4.2.0.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
32a3b09c51
gnu: r-abn: Update to 2.7-1. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3360f14b08
gnu: r-ldheatmap: Update to 1.0-6. 
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3ceaa41e67
gnu: r-wgcna: Update to 1.71. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
 2022-05-28 23:18:42 +02:00
Ricardo Wurmus
ac12a57b78
gnu: r-activepathways: Update to 1.1.0. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
 2022-05-28 23:18:42 +02:00
zimoun
caa51b5d10
gnu: Add r-pscbs. 
* gnu/packages/bioconductor.scm (r-pscbs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-24 23:27:49 +02:00
Mădălin Ionel Patrașcu
7494f4b4ab
gnu: Add r-agimicrorna. 
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:23:50 +02:00
Mădălin Ionel Patrașcu
9c19db8c1d
gnu: Add r-adductomicsr. 
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
290934c8fc
gnu: Add r-adductdata. 
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
31c9f0e301
gnu: Add r-agilp. 
* gnu/packages/bioconductor.scm (r-agilp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:35:06 +02:00
Mădălin Ionel Patrașcu
37f584592a
gnu: Add r-aggregatebiovar. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:29:20 +02:00
Mădălin Ionel Patrașcu
73fe0dab50
gnu: Add r-agdex. 
* gnu/packages/bioconductor.scm (r-agdex): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:24:55 +02:00
Mădălin Ionel Patrașcu
be2ead3073
gnu: Add r-affyrnadegradation. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:18:27 +02:00
Mădălin Ionel Patrașcu
851770312f
gnu: Add r-affixcan. 
* gnu/packages/bioconductor.scm (r-affixcan): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 16:07:58 +02:00
Mădălin Ionel Patrașcu
43dc50a5c7
gnu: Add r-adsplit. 
* gnu/packages/bioconductor.scm (r-adsplit): New variable.
 2022-04-27 16:03:22 +02:00
Mădălin Ionel Patrașcu
a45dfa8a73
gnu: Add r-adimpute. 
* gnu/packages/bioconductor.scm (r-adimpute): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-27 15:50:53 +02:00
Mădălin Ionel Patrașcu
936f23a654
gnu: Add r-adamgui. 
* gnu/packages/bioconductor.scm (r-adamgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-26 23:47:54 +02:00
Ricardo Wurmus
b79431b5e9
gnu: Add r-lfa. 
* gnu/packages/bioconductor.scm (r-lfa): New variable.
 2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu
2902adfc7e
gnu: Add r-adam. 
* gnu/packages/bioconductor.scm (r-adam): New variable.
 2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu
b0dd06bd0c
gnu: Add r-xcir. 
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 14:53:17 +02:00
Ricardo Wurmus
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
 2022-04-14 13:38:30 +02:00
Ricardo Wurmus
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
 2022-04-14 13:37:23 +02:00
Ricardo Wurmus
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics). 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
 2022-04-14 13:35:22 +02:00
Ricardo Wurmus
aafd0d2309
gnu: r-absseq: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
 2022-04-14 13:34:11 +02:00
Ricardo Wurmus
ed3697c040
gnu: r-abarray: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
 2022-04-14 13:32:52 +02:00
Ricardo Wurmus
67941709e2
gnu: r-aneufinder: Move to packages section. 
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
 2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu
cab6657094
gnu: Add r-absseq. 
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu
a436582124
gnu: Add r-abarray. 
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu
1b2b1c30e2
gnu: Add r-acde. 
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu
dd9d26bce6
gnu: Add r-wppi. 
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu
55be5fc400
gnu: Add r-acme. 
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu
08df30f232
gnu: Add r-acgh. 
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:59:15 +02:00
Mădălin Ionel Patrașcu
839241501a
gnu: Add r-ace. 
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu
7d990e775e
gnu: r-catalyst: Update description. 
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:43:24 +02:00
Ricardo Wurmus
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
5acc125305
gnu: r-omnipathr: Update to 3.2.8. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2def20d3ae
gnu: r-bgeedb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
c7cb92e494
gnu: r-gviz: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3c7e190eea
gnu: r-catalyst: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
40735701a8
gnu: r-singler: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2a71a7b961
gnu: r-s4vectors: Update to 0.32.4. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
c9e925d444
gnu: r-universalmotif: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
9950ed71fc
gnu: r-cytolib: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
0861d4fff5
gnu: r-rsubread: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
cb30400097
gnu: r-ropls: Update to 1.26.4. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
0c478f50f2
gnu: r-birewire: Update to 3.26.5. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
b446be46ba
gnu: r-biocfilecache: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
88ed3fc340
gnu: r-genomicscores: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
21037105ac
gnu: r-enrichplot: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
f8a38e8380
gnu: r-geoquery: Update to 2.62.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
84c0ec875c
gnu: r-destiny: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
d625f52bca
gnu: r-chippeakanno: Update to 3.28.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
f7d7ba3613
gnu: r-diffbind: Update to 3.4.11. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
cf46f2c331
gnu: r-systempiper: Update to 2.0.8. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
43053e08da
gnu: r-stringdb: Update to 2.6.5. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
a3ddba54fd
gnu: r-slingshot: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
6dad28d221
gnu: r-rhdf5: Update to 2.38.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
30027f837d
gnu: r-regioner: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
06d13cf4b0
gnu: r-msnbase: Update to 2.20.4. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
e586613384
gnu: r-mutationalpatterns: Update to 3.4.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
78f7de977a
gnu: r-limma: Update to 3.50.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
68c1c989b6
gnu: r-genomicfeatures: Update to 1.46.5. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
455636fecd
gnu: r-genomeinfodb: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
9000c8acc2
gnu: r-ensembldb: Update to 2.18.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
e4816bcaed
gnu: r-biomart: Update to 2.50.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
ac67d0a467
gnu: r-annotationhub: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
f6bc281cd7
gnu: r-tricycle: Move out of annotation packages. 
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
 2022-04-14 06:55:20 +02:00
Ricardo Wurmus
8550976832
gnu: r-rbowtie: Fix build on architectures other than x86_64. 
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
 2022-04-12 16:00:01 +02:00
Ricardo Wurmus
418c6aff40
gnu: r-abn: Update to 2.7-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0.
[propagated-inputs]: Add r-graph.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus
ba5e32d9ce
gnu: r-nmf: Update to 0.24.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
 2022-04-12 15:59:51 +02:00
Mădălin Ionel Patrașcu
3704a7b897
gnu: Add r-tricycle. 
* gnu/packages/bioconductor.scm (r-tricycle): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-11 15:39:29 +02:00
Hong Li
730ac9ab85
gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mădălin Ionel Patrașcu
0a5c2816ea
gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
zimoun
8a0713aef2
gnu: Add r-diffcyt. 
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
 2022-03-15 22:55:37 +01:00
zimoun
fdbc472bd1
gnu: Add r-scannotatr. 
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
 2022-03-15 22:50:42 +01:00
Ricardo Wurmus
5a809551dc
gnu: Add r-ensdb-hsapiens-v86. 
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v86): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus
6a6a514ef4
gnu: Add r-ensdb-mmusculus-v79. 
* gnu/packages/bioconductor.scm (r-ensdb-mmusculus-v79): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus
80b0e79629
gnu: r-abn: Update to 2.6-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.6-0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2022-01-23 14:01:31 +01:00
Ricardo Wurmus
c486d20dc7
gnu: r-activepathways: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.4.
 2022-01-23 14:01:31 +01:00
Ricardo Wurmus
cadcbbaf65
gnu: r-bigmelon: Add r-knitr. 
* gnu/packages/bioconductor.scm (r-bigmelon)[native-inputs]: Add r-knitr.
 2022-01-21 18:45:27 +01:00
zimoun
65a7a73fd5
gnu: Add r-hgu133plus2-db. 
* gnu/packages/bioconductor.scm (r-hgu133plus2-db): New variable.
 2022-01-21 15:53:17 +01:00
zimoun
a81e20b18a
gnu: Add r-jetset. 
* gnu/packages/bioconductor.scm (r-jetset): New variable.
 2022-01-21 15:53:17 +01:00
zimoun
40042cca73
gnu: r-org-dr-eg-db: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.14.0.
 2022-01-21 15:53:13 +01:00
Ricardo Wurmus
15b509e654
gnu: r-rbowtie: Add missing input. 
* gnu/packages/bioconductor.scm (r-rbowtie)[inputs]: Add zlib.
 2022-01-20 15:25:56 +01:00
Ricardo Wurmus
31a0b086da
gnu: r-pasilla: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-pasilla)[source]: Use bioconductor-uri.
 2022-01-20 12:00:03 +01:00
Ricardo Wurmus
61a1c3f72d
gnu: Add r-transcriptr. 
* gnu/packages/bioconductor.scm (r-transcriptr): New variable.
 2022-01-11 14:48:26 +01:00
Efraim Flashner
c7ef7a0f84
gnu: r-sanssouci: Add source file-name. 
* gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name
field.
 2022-01-07 11:27:34 +02:00
Ricardo Wurmus
ad82f2a231
gnu: r-tximeta: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
cc16a10005
gnu: r-tcgabiolinks: Update to 2.22.2. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
2d4ce9bb5f
gnu: r-biodb: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.2.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
fdae05747c
gnu: r-sushi: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.32.0.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
76d7f23d04
gnu: r-bioassayr: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.1.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
04e2461e26
gnu: r-universalmotif: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
7ab194b88c
gnu: r-cytolib: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
489edb479d
gnu: r-clusterprofiler: Update to 4.2.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
365f04e026
gnu: r-icobra: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
0be8a3e525
gnu: r-destiny: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
7227f93703
gnu: r-diffbind: Update to 3.4.3. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
b8dddafa7c
gnu: r-systempiper: Update to 2.0.5. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
013cda4abb
gnu: r-structuralvariantannotation: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
f9288cdf7c
gnu: r-genomicfeatures: Update to 1.46.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
4fc0a88a91
gnu: r-chipseeker: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus
9bf3a18fb6
gnu: r-biocparallel: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3.
 2022-01-06 07:49:40 +01:00
Ricardo Wurmus
ae00bf2d5e
gnu: r-yapsa: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1.
[propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus.
 2022-01-06 07:49:37 +01:00
Ricardo Wurmus
231e33d636
gnu: r-activedriverwgs: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
b615af830b
gnu: r-activedriverwgs: Update to 1.1.2. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2.
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38,
r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
734e1b185f
gnu: r-valr: Update to 0.6.4. 
* gnu/packages/cran.scm (r-valr): Move from here...
* gnu/packages/bioconductor.scm (r-valr): ...to here.  Update to 0.6.4.
[propagated-inputs]: Add r-rtracklayer.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
4b58ebd845
gnu: Add r-singler. 
* gnu/packages/bioconductor.scm (r-singler): New variable.
 2021-12-16 22:46:32 +01:00
Ricardo Wurmus
443110cd86
gnu: Add r-celldex. 
* gnu/packages/bioconductor.scm (r-celldex): New variable.
 2021-12-16 22:46:32 +01:00
Ricardo Wurmus
fa03268c89
gnu: Add r-maftools. 
* gnu/packages/bioconductor.scm (r-maftools): New variable.
 2021-12-14 17:38:16 +01:00
Ricardo Wurmus
9a1ab21b07
gnu: Add r-tcgabiolinks. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable.
 2021-12-14 17:38:16 +01:00
Ricardo Wurmus
8b0adf9f7e
gnu: Add r-tcgabiolinksgui-data. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable.
 2021-12-14 17:38:15 +01:00
Maxim Cournoyer
6dffced09e
Merge branch 'core-updates-frozen' into 'master'. 
At last!
 2021-12-13 16:29:21 -05:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Mădălin Ionel Patrașcu
5f32468acf
gnu: Add r-chromvarmotifs. 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 13:38:27 +01:00
Ricardo Wurmus
cf2251b9f7
gnu: Add r-sanssouci. 
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
 2021-12-13 11:17:43 +01:00
Ricardo Wurmus
73d2fb94e3
gnu: Add r-isoformswitchanalyzer. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
 2021-12-13 10:54:16 +01:00
Ricardo Wurmus
495646aa73
gnu: Add r-drimseq. 
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
 2021-12-13 10:54:05 +01:00
Marcel Schilling
531a69ecb6
gnu: Add r-dearseq. 
* gnu/packages/bioconductor.scm (r-dearseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 09:50:58 +01:00
Ricardo Wurmus
8fa7de386c
gnu: r-flowclust: Add gsl. 
* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally
committed comment character.
 2021-12-03 13:31:32 +01:00
Ricardo Wurmus
c2c63a00de
gnu: Add r-scdblfinder. 
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
 2021-12-02 10:03:07 +01:00
Nicolas Vallet
d7477f09c3
gnu: Add r-phyloseq. 
* gnu/packages/cran.scm (r-phyloseq): New variable

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 09:29:26 +01:00
Ricardo Wurmus
3411f8d512
gnu: Add r-fmcsr. 
* gnu/packages/bioconductor.scm (r-fmcsr): New variable.
 2021-11-30 22:48:07 +01:00
Mădălin Ionel Patrașcu
60abbbf8c5
gnu: Add r-xmapbridge. 
* gnu/packages/bioconductor.scm (r-xmapbridge): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:46:01 +01:00
Mădălin Ionel Patrașcu
aa2aaa65ce
gnu: Add r-xina. 
* gnu/packages/bioconductor.scm (r-xina): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:36:27 +01:00
Mădălin Ionel Patrașcu
c96d8ce720
gnu: Add r-stringdb. 
* gnu/packages/bioconductor.scm (r-stringdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:36:27 +01:00
zimoun
128fd2ab59
gnu: Add r-derfinderhelper. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-26 13:51:00 +01:00
Ricardo Wurmus
651fc759d7
gnu: r-s4vectors: Update to 0.32.3. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5e806fbaf4
gnu: r-mixomics: Update to 6.18.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5c6225b641
gnu: r-xcms: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
370bb5851a
gnu: r-dose: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
010806f78a
gnu: r-genomicranges: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
cfeccf8e90
gnu: r-biocparallel: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
67de75778f
gnu: r-biomart: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
639bfeca2b
gnu: Add r-bsgenome-drerio-ucsc-danrer11. 
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable.
 2021-11-24 12:13:13 +01:00