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gnu: Add r-xcir.

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* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2022-04-11 16:03:35 +02:00 committed by Ricardo Wurmus
parent 16372cb347
commit b0dd06bd0c
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1 changed files with 38 additions and 1 deletions
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39
gnu/packages/bioconductor.scm
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@ -7,7 +7,7 @@
;;; Copyright © 2017, 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
@ -5191,6 +5191,43 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
;; There is no source tarball, so we fetch the code from the Bioconductor git
;; repository.
(define-public r-xcir
(let ((commit "3b59d456f2ad7f70285915b036b1dc4279687277")
(revision "1"))
(package
(name "r-xcir")
(version (git-version "1.8.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://git.bioconductor.org/packages/XCIR")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1xxw5ady5j2p7z7zjxgx7lhm85x7fxbljiv49lc2ghsvh9wm937p"))))
(properties `((upstream-name . "XCIR")))
(build-system r-build-system)
(propagated-inputs (list r-biomart
r-biostrings
r-data-table
r-ggplot2
r-iranges
r-readxl
r-s4vectors
r-seqminer
r-variantannotation))
(native-inputs (list r-knitr))
(home-page "https://github.com/SRenan/XCIR")
(synopsis "Analysis of X chromosome inactivation")
(description
"This package is an R package that offers models and tools for subject
level analysis of @dfn{X chromosome inactivation} (XCI) and XCI-escape
inference.")
(license license:gpl2))))
(define-public r-xina
(package
(name "r-xina")