gnu: Add r-chromvarmotifs.

* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Mădălin Ionel Patrașcu 2021-12-13 12:52:07 +01:00 committed by Ricardo Wurmus
parent 788f56b4dc
commit 5f32468acf
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC

@ -1183,6 +1183,34 @@ biscuiteer.")
chromstaR package.")
(license license:gpl3)))
(define-public r-chromvarmotifs
(let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
(revision "1"))
(package
(name "r-chromvarmotifs")
(version (git-version "0.2.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreenleafLab/chromVARmotifs")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
(properties `((upstream-name . "chromVARmotifs")))
(build-system r-build-system)
(propagated-inputs
`(("r-tfbstools" ,r-tfbstools)))
(home-page "https://github.com/GreenleafLab/chromVARmotifs")
(synopsis "Stores motif collections for use with motifmatchr or chromVAR")
(description
"This package stores motif collections as lists of @dfn{position
frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
package for use in R with packages like @code{motifmatchr} or
@code{chromVAR}.")
(license license:expat))))
(define-public r-copyhelper
(package
(name "r-copyhelper")