Commit Graph

2672 Commits

Author SHA1 Message Date
Ricardo Wurmus
0258381d43
gnu: r-destiny: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.10.0.
2022-05-28 23:19:21 +02:00
Ricardo Wurmus
5aad467251
gnu: r-biocsingular: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.12.0.
2022-05-28 23:19:21 +02:00
Ricardo Wurmus
a2cc02fea8
gnu: r-metapod: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.4.0.
2022-05-28 23:19:21 +02:00
Ricardo Wurmus
e2ec50a938
gnu: r-ggtree: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
21715b19d3
gnu: r-treeio: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
8026665191
gnu: r-scaledmatrix: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
ccee3dcc6b
gnu: r-biocneighbors: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.14.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
0190978dcf
gnu: r-ruvseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.30.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
8b475c3e92
gnu: r-dnabarcodes: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.26.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
d6c3acb1c2
gnu: r-inspect: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.26.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
86dd93110e
gnu: r-plgem: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.68.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
a028875b63
gnu: r-rots: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.24.0.
2022-05-28 23:19:20 +02:00
Ricardo Wurmus
09d4735055
gnu: r-glimma: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.6.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
53b152b2cf
gnu: r-goseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.48.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
6d9a73c847
gnu: r-ctc: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.70.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
120329918b
gnu: r-genomicinteractions: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.30.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
6695c4e33b
gnu: r-interactionset: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.24.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
292efe0ae2
gnu: r-riboseqr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.30.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
2a8444ca5c
gnu: r-riboprofiling: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.26.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
d47ffaf7ee
gnu: r-chipcomp: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.26.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
d6559d1e1b
gnu: r-bayseq: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.30.0.
2022-05-28 23:19:19 +02:00
Ricardo Wurmus
ecd2d01d1e
gnu: r-qdnaseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.32.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
3dd1b0508d
gnu: r-cghcall: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.58.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
7188427b5c
gnu: r-cghbase: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.56.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
a7c3f7f2b1
gnu: r-marray: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.74.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
a1da6d7d45
gnu: r-matrixgenerics: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
ef5c266f23
gnu: r-chippeakanno: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
d825e79fc8
gnu: r-graph: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.74.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
de49b64b69
gnu: r-multtest: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.52.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
f6c6605102
gnu: r-mbkmeans: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.12.0.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
7bc3e13bf5
gnu: r-diffbind: Update to 3.6.1.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.1.
2022-05-28 23:19:18 +02:00
Ricardo Wurmus
84fc29bad6
gnu: r-greylistchip: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.28.1.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
21db7a48e0
gnu: r-apeglm: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.18.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
ec76f7ca9b
gnu: r-qvalue: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.28.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
8a2e344cf7
gnu: r-oligo: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.60.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
4ee5d02e70
gnu: r-oligoclasses: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.58.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
4268f796c8
gnu: r-geneplotter: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.74.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
2b652812e8
gnu: r-zellkonverter: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.1.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
2bc32aa065
gnu: r-zlibbioc: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.42.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
2b36da1784
gnu: r-xvector: Update to 0.36.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.36.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
036dcaed7d
gnu: r-xmapbridge: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.54.0.
2022-05-28 23:19:17 +02:00
Ricardo Wurmus
e7a0b14115
gnu: r-xina: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.14.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
be389d989d
gnu: r-vsn: Update to 3.64.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.64.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
a9d0efc639
gnu: r-variantannotation: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.42.1.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
131135458e
gnu: r-tximport: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.24.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
47cdb42840
gnu: r-topgo: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.48.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
de403d02ad
gnu: r-systempiper: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.2.2.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
02c26f40b7
gnu: r-sva: Update to 3.44.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.44.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
a0734f8bdd
gnu: r-summarizedexperiment: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.26.1.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
8037227617
gnu: r-structuralvariantannotation: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.12.0.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
d044d62102
gnu: r-stringdb: Update to 2.8.4.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.8.4.
2022-05-28 23:19:16 +02:00
Ricardo Wurmus
ed19cbbf15
gnu: r-stager: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.18.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
8d1ab3f57d
gnu: r-slingshot: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.4.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
3f873a27e0
gnu: r-trajectoryutils: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.4.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
909d580b9a
gnu: r-transcriptr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.24.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
9b935eaa56
gnu: r-simplifyenrichment: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.0.
[propagated-inputs]: Add r-colorspace and r-globaloptions.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
6d2b2e0ad9
gnu: r-shortread: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.54.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
27588f020d
gnu: r-seqpattern: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.28.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
5346b424cc
gnu: r-seqlogo: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.62.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
a260fc5a90
gnu: r-scdblfinder: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.10.0.
[propagated-inputs]: Add r-genomeinfodb, r-genomicranges, r-iranges, r-rsamtools, and
r-rtracklayer.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
021ab21b57
gnu: r-scannotatr: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.2.0.
2022-05-28 23:19:15 +02:00
Ricardo Wurmus
ea283a3cda
gnu: r-rtracklayer: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
990ee0c7cc
gnu: r-rsamtools: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.12.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
a8c63ab610
gnu: r-rhdf5filters: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.8.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
3c31e7e249
gnu: r-rhdf5: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.40.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
de8b8c86e6
gnu: r-reportingtools: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.36.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
21669d75f6
gnu: r-regioner: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.28.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
9d05a948ea
gnu: r-rcas: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.22.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
1a873db6b2
gnu: r-rbgl: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.72.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
2b7c604ebf
gnu: r-protgenerics: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.28.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
d4201b5f61
gnu: r-pcamethods: Update to 1.88.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.88.0.
2022-05-28 23:19:14 +02:00
Ricardo Wurmus
e3878bc3c0
gnu: r-organismdbi: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d1134b61fd
gnu: r-mzr: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0.
[propagated-inputs]: Remove r-zlibbioc.
[inputs]: Replace boost-for-mysql with boost.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
3eb763c2ba
gnu: r-mzid: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.34.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d6fe1e2d12
gnu: r-msnid: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.30.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
d6f683b561
gnu: r-msnbase: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.22.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
8ec1ca001d
gnu: r-mutationalpatterns: Update to 3.6.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.6.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
56741afedd
gnu: r-methylkit: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.22.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
0cb9ffc4e3
gnu: r-limma: Update to 3.52.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.1.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
cb17da65a5
gnu: r-lfa: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.26.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
2a3372953d
gnu: r-keggrest: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.0.
2022-05-28 23:19:13 +02:00
Ricardo Wurmus
a6cb10afc3
gnu: r-interactivedisplaybase: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.34.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
cd9b5f0029
gnu: r-impute: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.70.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
bb2b2f6543
gnu: r-rhtslib: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.28.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
3daf94f147
gnu: r-hpar: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.38.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
3e1dbcb3bf
gnu: r-gseabase: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.58.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
5c3a303d30
gnu: r-gostats: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.62.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
bf93ff28c5
gnu: r-genomicranges: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.48.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
d14aeab8b8
gnu: r-genomicfiles: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.32.1.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
fa516541c3
gnu: r-genomicfeatures: Update to 1.48.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.1.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
1a04133411
gnu: r-genomicalignments: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.0.
2022-05-28 23:19:12 +02:00
Ricardo Wurmus
4966e9e925
gnu: r-genomeinfodb: Update to 1.32.2.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.2.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
09ae595016
gnu: r-genomation: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.28.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
b755e0d623
gnu: r-geneoverlap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.32.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
cb6e76dc63
gnu: r-genefilter: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.78.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
3fd4c8f29f
gnu: r-gage: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
b604766021
gnu: r-fastseg: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.42.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
89b669ba0e
gnu: r-ensembldb: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.1.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
9d030069d4
gnu: r-edger: Update to 3.38.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.1.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
1d19d45fe7
gnu: r-edaseq: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.30.0.
2022-05-28 23:19:11 +02:00
Ricardo Wurmus
12a8b7bca3
gnu: r-dirichletmultinomial: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.38.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
380384a209
gnu: r-diffcyt: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.16.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
ea0c72bed0
gnu: r-dexseq: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.42.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
a83d8ee1eb
gnu: r-deseq2: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.36.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d29abfbd40
gnu: r-copywriter: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.28.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d15ab4ed30
gnu: r-complexheatmap: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.0.
[propagated-inputs]: Add r-codetools.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
d66077a5ad
gnu: r-chipseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.46.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
5e9e69ccd8
gnu: r-chipseeker: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
b7f95b40a8
gnu: r-category: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.62.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
417481b3b0
gnu: r-bsgenome: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.64.0.
2022-05-28 23:19:10 +02:00
Ricardo Wurmus
6479274a0b
gnu: r-biovizbase: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.44.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
e56181a34e
gnu: r-biocparallel: Update to 1.30.2.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.2.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
48ca8c8026
gnu: r-biomart: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.52.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
70b29256f6
gnu: r-biobase: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.56.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
4d9011c00b
gnu: r-bamsignals: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.28.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
043b388f38
gnu: r-aroma-light: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.26.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
0b2579cbe0
gnu: r-annotationhub: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.4.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
282985f6c3
gnu: r-annotationforge: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
3db3797305
gnu: r-annotationfilter: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.20.0.
2022-05-28 23:19:09 +02:00
Ricardo Wurmus
0dcb2df4e1
gnu: r-annotationdbi: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.58.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
2563aeb416
gnu: r-annotate: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.74.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
b928f25f51
gnu: r-affxparser: Update to 1.68.1.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.68.1.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
da1e879b9b
gnu: r-affyio: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.66.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
fb1fb2b8c2
gnu: r-affycoretools: Update to 1.68.1.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.68.1.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
d4af958ae8
gnu: r-affycontam: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.54.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
83f8f3ae08
gnu: r-affycompatible: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.56.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
45a6d9c0f4
gnu: r-affycomp: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.72.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
429e687e69
gnu: r-affy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
a15c457c59
gnu: r-isoformswitchanalyzer: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
2022-05-28 23:19:08 +02:00
Ricardo Wurmus
285b5cb7fa
gnu: r-iranges: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
48c3389314
gnu: r-ideoviz: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
051b7e63f2
gnu: r-bluster: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
59fff0e2d2
gnu: r-drimseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
cea1b9029a
gnu: r-derfinderhelper: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
a2173119ec
gnu: r-delayedarray: Update to 0.22.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
d15f46c5cf
gnu: r-deepsnv: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
7149e667c1
gnu: r-decipher: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
25847e60fe
gnu: r-dearseq: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
2022-05-28 23:19:07 +02:00
Ricardo Wurmus
6f0430cdc2
gnu: r-coverageview: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
00d51727e5
gnu: r-biocgenerics: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
b19400063e
gnu: r-biocversion: Update to 3.15.2.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
75628fc7ce
gnu: r-aneufinder: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
a5e1a37cdf
gnu: r-agilp: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
6e1d256151
gnu: r-agdex: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
f4a85d5555
gnu: r-affixcan: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
2022-05-28 23:19:06 +02:00
Ricardo Wurmus
3e524e46a0
gnu: r-adsplit: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
3a29b78fa9
gnu: r-adimpute: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
69dc67d9aa
gnu: r-adam: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
5911a8992b
gnu: r-absseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
67d858b97c
gnu: r-abarray: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
90d165ea86
gnu: r-biostrings: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
413133e430
gnu: Add r-decoupler.
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
2022-05-28 23:19:05 +02:00
Ricardo Wurmus
d723619fc3
gnu: r-biostrings: Patch for R 4.2.0.
* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase
'patch-for-R-4.2.0.
2022-05-28 23:19:04 +02:00
Ricardo Wurmus
32a3b09c51
gnu: r-abn: Update to 2.7-1.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3360f14b08
gnu: r-ldheatmap: Update to 1.0-6.
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus
3ceaa41e67
gnu: r-wgcna: Update to 1.71.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus
ac12a57b78
gnu: r-activepathways: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
2022-05-28 23:18:42 +02:00
zimoun
caa51b5d10
gnu: Add r-pscbs.
* gnu/packages/bioconductor.scm (r-pscbs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-24 23:27:49 +02:00
Mădălin Ionel Patrașcu
7494f4b4ab
gnu: Add r-agimicrorna.
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-02 15:23:50 +02:00
Mădălin Ionel Patrașcu
9c19db8c1d
gnu: Add r-adductomicsr.
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
290934c8fc
gnu: Add r-adductdata.
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
31c9f0e301
gnu: Add r-agilp.
* gnu/packages/bioconductor.scm (r-agilp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 16:35:06 +02:00
Mădălin Ionel Patrașcu
37f584592a
gnu: Add r-aggregatebiovar.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 16:29:20 +02:00
Mădălin Ionel Patrașcu
73fe0dab50
gnu: Add r-agdex.
* gnu/packages/bioconductor.scm (r-agdex): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 16:24:55 +02:00
Mădălin Ionel Patrașcu
be2ead3073
gnu: Add r-affyrnadegradation.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 16:18:27 +02:00
Mădălin Ionel Patrașcu
851770312f
gnu: Add r-affixcan.
* gnu/packages/bioconductor.scm (r-affixcan): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 16:07:58 +02:00
Mădălin Ionel Patrașcu
43dc50a5c7
gnu: Add r-adsplit.
* gnu/packages/bioconductor.scm (r-adsplit): New variable.
2022-04-27 16:03:22 +02:00
Mădălin Ionel Patrașcu
a45dfa8a73
gnu: Add r-adimpute.
* gnu/packages/bioconductor.scm (r-adimpute): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-27 15:50:53 +02:00
Mădălin Ionel Patrașcu
936f23a654
gnu: Add r-adamgui.
* gnu/packages/bioconductor.scm (r-adamgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-26 23:47:54 +02:00
Ricardo Wurmus
b79431b5e9
gnu: Add r-lfa.
* gnu/packages/bioconductor.scm (r-lfa): New variable.
2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu
2902adfc7e
gnu: Add r-adam.
* gnu/packages/bioconductor.scm (r-adam): New variable.
2022-04-26 09:48:13 +02:00
Mădălin Ionel Patrașcu
b0dd06bd0c
gnu: Add r-xcir.
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
Ricardo Wurmus
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
Ricardo Wurmus
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
Ricardo Wurmus
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
Ricardo Wurmus
aafd0d2309
gnu: r-absseq: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
Ricardo Wurmus
ed3697c040
gnu: r-abarray: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
Ricardo Wurmus
67941709e2
gnu: r-aneufinder: Move to packages section.
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu
cab6657094
gnu: Add r-absseq.
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu
a436582124
gnu: Add r-abarray.
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu
1b2b1c30e2
gnu: Add r-acde.
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu
dd9d26bce6
gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu
55be5fc400
gnu: Add r-acme.
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu
08df30f232
gnu: Add r-acgh.
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
Mădălin Ionel Patrașcu
839241501a
gnu: Add r-ace.
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu
7d990e775e
gnu: r-catalyst: Update description.
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
Ricardo Wurmus
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
5acc125305
gnu: r-omnipathr: Update to 3.2.8.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2def20d3ae
gnu: r-bgeedb: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
c7cb92e494
gnu: r-gviz: Update to 1.38.4.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3c7e190eea
gnu: r-catalyst: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
40735701a8
gnu: r-singler: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2a71a7b961
gnu: r-s4vectors: Update to 0.32.4.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
2022-04-14 11:29:40 +02:00
Ricardo Wurmus
51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
2022-04-14 11:29:39 +02:00