gnu: Add r-singler.
* gnu/packages/bioconductor.scm (r-singler): New variable.
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@ -13064,6 +13064,38 @@ factors for each cell, along with the usual metadata for genes and
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libraries.")
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(license license:gpl3)))
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(define-public r-singler
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(package
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(name "r-singler")
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(version "1.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "SingleR" version))
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(sha256
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(base32 "19lsn3cpghkhfbx4jqgbwwrnacrl7vj3r91ymd1gk02c9pn5dmci"))))
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(properties `((upstream-name . "SingleR")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-beachmat
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r-biocneighbors
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r-biocparallel
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r-biocsingular
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r-delayedarray
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r-delayedmatrixstats
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r-matrix
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r-rcpp
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r-s4vectors
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/LTLA/SingleR")
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(synopsis "Reference-based single-cell RNA-seq annotation")
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(description
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"This package performs unbiased cell type recognition from single-cell
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RNA sequencing data, by leveraging reference transcriptomic datasets of pure
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cell types to infer the cell of origin of each single cell independently.")
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(license license:gpl3)))
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(define-public r-scuttle
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(package
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(name "r-scuttle")
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