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1490 Commits

Author SHA1 Message Date
Joe Marcus Clarke
d07ad1ca0b Fix another TYPE name change with goffice 0.7.5. 2009-05-03 17:51:47 +00:00
Joe Marcus Clarke
302e506b5b Add another goffice-0.7.5 build fix. 2009-05-03 04:44:53 +00:00
Joe Marcus Clarke
e170985c57 Fix the build with goffice 0.7.5. 2009-05-03 04:00:56 +00:00
Joe Marcus Clarke
9ed5de9174 Chase the goffice update. 2009-05-03 00:38:05 +00:00
Martin Wilke
38be6ca769 - Update to 1.1.0 
PR:		133337
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-04-30 22:43:54 +00:00
Max Brazhnikov
7602b8e28d Update to 2.2.1 2009-04-26 14:49:08 +00:00
Maho Nakata
8f733c55c2 Fix build with NOPORTDOCS, NOPORTEXAMPLES. 
Submitted by:	QAT
 2009-04-24 10:26:05 +00:00
Martin Wilke
64b23ee9d0 Machine Learning PY (mlpy) is a high-performance Python package for 
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:	http://mlpy.fbk.eu/

PR:		ports/133932
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-04-23 17:02:20 +00:00
Maho Nakata
89d4fb1fe0 Update to 3.4.0. 2009-04-21 07:45:40 +00:00
Maho Nakata
33bd043b66 Fix build on amd64. 
Spotted by: QAT and pav.
 2009-04-13 05:20:27 +00:00
Yen-Ming Lee
08f9e8f9c4 - Update to 6.02 
PR:		133601
Submitted by:	leeym
Approved by:	maintainer
 2009-04-11 20:37:01 +00:00
Martin Wilke
f406ee2e01 2009-03-22 science/oof: Broken with GCC 4.2 and beyond 
2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable
 2009-04-11 09:58:39 +00:00
Martin Wilke
db4b1a44a3 - Fix DEPRECATED output 
Reported by:	rmport
 2009-04-11 09:52:52 +00:00
Thierry Thomas
fefa5eaa8b - Upgrade to 5.7.3 
Release notes at
	<http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html>

- enable bindings to get the headers
	This requires makemake and GSL.

Approved by:	Maho (maintainer)
 2009-04-10 15:22:53 +00:00
Dennis Herrmann
cf8759b2c9 - Update maintainer mail address 
PR:		ports/133397
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
Approved by:	tabthorpe (co-mentor)
 2009-04-05 20:50:49 +00:00
Ion-Mihai Tetcu
a5e8a0b9a9 Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging with 
-DNOPORT* defined.

Prompted by:	QAT QA run
Approved by:	maintainer timeout on QATMail
 2009-04-05 12:29:44 +00:00
Rong-En Fan
583e279a73 - Update to 2.89 2009-04-01 01:32:16 +00:00
Martin Wilke
a8dee6b343 - Allow to build with MAKE_JOBS_SAFE 
PR:		133221
Submitted by:	Roland Smith <rsmith@xs4all.nl> (maintainer)
 2009-03-31 07:52:12 +00:00
Joe Marcus Clarke
2e77166891 Chase the goffice update. 2009-03-28 03:05:24 +00:00
Pav Lucistnik
7f4323449e - Fix for new ruby-gettext 
- Update maintainer's email address

PR:		ports/133046
Submitted by:	Shin'ya Murakami <murashin@epa.scitec.kobe-u.ac.jp> (maintainer)
 2009-03-25 12:05:43 +00:00
Max Brazhnikov
eecc33021e bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
Martin Wilke
4e3a8bfce2 - Update to 0.98 
PR:		132971
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-23 21:51:29 +00:00
Thierry Thomas
3d2ad7d3f8 - Upgrade to 5.6.5; 
- Install libabinit;

- Handle NOPORTDOCS and NOPORTEXAMPLES;

- s/test/regression-test/;

- Don't install under a versionned $PREFIX.

Approved by:	maho (maintainer)
 2009-03-23 18:27:37 +00:00
Pav Lucistnik
b50b662db3 - Fix Fortran linking 
- Add a slaveport so fortran enabled netcdf can be packaged

PR:		ports/132430
Submitted by:	thierry
Approved by:	maintainer timeout (14 days)
 2009-03-22 22:09:27 +00:00
Martin Wilke
d4d8ed5164 Geo::ReadGRIB is an object Perl module that provides read 
access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.

WWW:	http://search.cpan.org/dist/Geo-ReadGRIB/

PR:		ports/132776
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-03-22 15:18:46 +00:00
Maho Nakata
dcfda0bf17 Update to 1.6.11. 2009-03-17 08:20:04 +00:00
Thierry Thomas
6a26b6b50c Fix plist with -DNOPORTDOCS. 
Reportded by:	QAT
 2009-03-16 22:34:19 +00:00
Martin Wilke
24f41cf769 - Update to 11.6.17 
PR:		131733
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-16 21:42:23 +00:00
Mark Linimon
c4e3a5d64a Mark as broken on sparc64: fails to compile. 2009-03-16 09:35:28 +00:00
Mark Linimon
5433360866 Mark broken: fails to compile on i386 and sparc64. 2009-03-16 08:43:58 +00:00
Martin Wilke
10b7f51c54 Brian is a simulator for spiking neural networks available on almost all 
platforms. The motivation for this project is that a simulator should
not only save the time of processors, but also the time of scientists.

Brian is easy to learn and use, highly flexible and easily extensible.
The Brian package itself and simulations using it are all written in
the Python programming language, which is an easy, concise and highly
developed language with many advanced features and development tools,
excellent documentation and a large community of users providing support
and extension packages.

WWW:  http://www.briansimulator.org/

PR:		ports/132155
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-03-16 06:07:37 +00:00
Pav Lucistnik
eae854d839 - Mark BROKEN: does not compile (../include/ecif_userinterface_TCL.h:41:17: 
error: tcl.h: No such file or directory)

Reported by:	pointyhat
 2009-03-13 14:25:43 +00:00
Thierry Thomas
befcfc1588 Upgrade to version 3.4.3. 2009-03-07 08:36:35 +00:00
Dennis Herrmann
2b3b399de8 - Use my FreeBSD address on the ports I maintain 
Approved by:	tabthorpe (co-mentor)
 2009-03-06 18:14:36 +00:00
Pav Lucistnik
911b7e57d5 - Mark BROKEN on FreeBSD 6.x, does not compile 
Reported by:	pointyhat
 2009-03-02 21:36:12 +00:00
Martin Wilke
1a9d6ed366 PsychoPy is an open-source package for creating psychology stimuli 
in Python (A real and free alternative to Matlab). PsychoPy combines
the graphical strengths of OpenGL with the easy Python syntax to give
psychophysics a free and simple stimulus presentation and control
package.

The goal is to provide, for the busy scientist (including me!), tools
to control timing and windowing and a simple set of pre-packaged
stimuli and methods. The code is platform independent, using Python
and C libraries that are widely available.

WWW:  http://www.psychopy.org/

PR:		ports/132156
Submitted by:	wenheping at gmail.com
 2009-02-28 19:58:19 +00:00
Martin Wilke
dad52be8e5 - Update to 0.7.0 
PR:		131636
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2009-02-28 19:54:59 +00:00
Martin Wilke
484b5acc7f - Update to 4.0.3 
PR:		131655
Submitted by:	Joerg Pulz <Joerg.Pulz@frm2.tum.de>
Approved by:	maintainer
 2009-02-28 19:49:49 +00:00
Rong-En Fan
81a4189c53 - Update description to reflect reality 2009-02-25 02:30:35 +00:00
Joe Marcus Clarke
602c204a89 Chase the goffice update. 2009-02-24 02:18:50 +00:00
Martin Wilke
7d22134ae1 netCDF version 4 has many features not found in earlier versions of the 
library and is implemented on top of HDF5. This module can read and
write files in both the new netCDF 4 and the old netCDF 3 format, and
can create files that are readable by HDF5 clients. The API modelled
after Scientific.IO.NetCDF, and should be familiar to users of that
module.

Many new features of netCDF 4 are implemented, such as multiple
unlimited dimensions, groups and zlib data compression. All the new
primitive data types (such as 64 bit and unsigned integer types) are
implemented, except variable-length strings (NC_STRING). User defined
data types (compound, vlen, enum etc.) are not supported.

WWW:  http://code.google.com/p/netcdf4-python/

PR:		ports/131866
Submitted by:	wenheping at gmail.com
 2009-02-23 20:18:45 +00:00
Martin Matuska
24bf28eff1 - Change default Tcl/Tk version to 8.5 
- Bump PORTVERSION of ports affected

Tested by:	pointyhat (pav)
 2009-02-23 14:46:37 +00:00
Gerald Pfeifer
a8277dd6f7 Mark unconditionally BROKEN, EXPIRATION_DATE=2009-03-22. 
Suggested by:	pav
 2009-02-22 01:31:20 +00:00
Max Brazhnikov
5f6ba2a345 Use my @FreeBSD.org email for the rest of my ports 2009-02-21 11:31:28 +00:00
Marcelo Araujo
baa19e0df7 - Mark as UNBROKEN on AMD64. 
- It isn't necessary to use USE_FORTRAN.
 2009-02-20 01:35:46 +00:00
Marcelo Araujo
ef56a06c67 - Mark as BROKEN, both doesn't compile on amd64. 
Reported by:	pav (pointyhat)
 2009-02-19 11:48:13 +00:00
Maho Nakata
b69dbd7d34 Fix build with gcc43. 
Spotted by pav
 2009-02-17 07:25:59 +00:00
Maho Nakata
1e01e4ebe1 Fix build with gcc43. 
Spotted by:	pav
 2009-02-14 08:36:17 +00:00
Maho Nakata
553c7e3cbe Fix build with gcc43. 
Fix obtained from
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html
.

Spotted by:	pav
 2009-02-14 08:07:13 +00:00
Wesley Shields
6ce638fdbf - Pass maintainership along. 2009-02-13 15:25:26 +00:00
Martin Matuska
c5e1202db4 - Update ImageMagick to 6.4.9.2 
- Libraries Magick++, MagickCore and MagickWand bumped to 2
- Update all ports using libraries above
 2009-02-10 19:50:55 +00:00
Gerald Pfeifer
44e552f824 Mark BROKEN. 2009-02-07 16:38:30 +00:00
Gerald Pfeifer
602f4b65f3 No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via 
Mk/bsd.gcc.mk.

Remove trailing whitespace to appease portlint.
 2009-02-07 15:11:31 +00:00
Gerald Pfeifer
35753a5a81 Remove obsolete comment. 
Approved by:	thierry
 2009-02-02 10:54:21 +00:00
Maho Nakata
1fffaf7887 Update to 1.1.4 
Suggested by: pav@
 2009-02-02 02:53:05 +00:00
Chin-San Huang
de1b6f6c07 - Update to 1.3.0 
- Enable HDF5 1.8, netCDF 4 and proj by default
- Reformat Makefile

PR:		ports/130720
Submitted by:	sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
 2009-02-01 09:54:29 +00:00
Pav Lucistnik
1e05a3718b - Distfile rerolled with minor change to configure script 
- Update download location

Reported by:	-fetch-original pointyhat run
 2009-01-30 22:25:07 +00:00
Pav Lucistnik
e93c59188a - Update download location, update WWW 
Reported by:	-fetch-original pointyhat run
 2009-01-30 21:15:33 +00:00
Beat Gaetzi
72329eb351 Update my email address to @FreeBSD.org. 
Approved by:	miwi (mentor)
 2009-01-28 23:25:21 +00:00
Thierry Thomas
c584171e48 Upgrade to 1.3.3. 2009-01-26 17:52:55 +00:00
Thierry Thomas
e8e613c2a6 Upgrade to 1.3.3 and use gfortran43. 
Changelog at
<http://rd.edf.com/the-edf-offers/research-and-development/softwares/code-saturne/code-saturne-news081127-en-601064.html>
 2009-01-26 17:52:53 +00:00
Thierry Thomas
fc5d806388 Upgrade to 0.12.0. 2009-01-26 17:52:46 +00:00
Thierry Thomas
1f2126a81c Upgrade to 1.0.8. 2009-01-26 17:52:44 +00:00
Florent Thoumie
584f727bc4 Fix science/afni after X.org 7.4 import (needs Xi). 
Reported by:	pointyhat (via pav)
 2009-01-24 10:02:09 +00:00
Florent Thoumie
340b57f8be - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).
 2009-01-23 16:28:36 +00:00
Martin Wilke
de766bbf0d - Chase lang/guile shlib bump 2009-01-22 21:31:33 +00:00
Martin Wilke
13c0f27605 - Chase lang/guile shlib bump 2009-01-22 16:04:11 +00:00
Marcelo Araujo
38b8e670c0 - We need use FCFLAGS to build it in AMD64 and IA64. 
- Bump PORTREVISION.
 2009-01-21 00:36:06 +00:00
Marcelo Araujo
6ac20ad188 - No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now 
done via Mk/bsd.gcc.mk.

Reported by:	gerald
 2009-01-20 17:35:18 +00:00
Dmitry Marakasov
725856c485 - Use USE_FORTRAN knob 
PR:		130734
Submitted by:	Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
 2009-01-20 08:24:11 +00:00
Greg Lewis
fc324b2f3e . Update to 1.12.9. 2009-01-20 05:44:41 +00:00
Pav Lucistnik
2fa218459c - Fix OPTIONS processing 
PR:		ports/130740
Submitted by:	Shin'ya Murakami <murashin@gfd-dennou.org>
 2009-01-19 19:15:54 +00:00
Gerald Pfeifer
323ea6d96f Leverage USE_FORTRAN instead of accomplishing the same manually. 2009-01-18 20:17:31 +00:00
Gerald Pfeifer
d85c8a1c8f Do not explicitly pass F77 and FFLAGS to CONFIGURE_ENV, this is now done 
transparently.

Approved by:	Stephen Montgomery-Smith <stephen@math.missouri.edu>
		(maintainer)
 2009-01-18 03:42:53 +00:00
Gerald Pfeifer
decbc6ac6b No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via 
Mk/bsd.gcc.mk.And for this port, CONFIGURE_ENV was bogus to begin with.

Submitted by:	Steven Kreuzer <skreuzer@exit2shell.com>
 2009-01-17 19:54:37 +00:00
Gerald Pfeifer
792fe875a8 No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via 
Mk/bsd.gcc.mk.

Submitted by:	Steven Kreuzer <skreuzer@exit2shell.com>
 2009-01-17 19:51:12 +00:00
Pav Lucistnik
691a9fd83f - Actually mark it broken on FreeBSD 6.x 2009-01-17 19:17:53 +00:00
Dirk Meyer
a6f9484f59 - add LICENSE: 2009-01-16 17:22:52 +00:00
Martin Wilke
31e0bde36d pydicom is a pure python package for working with DICOM files. It was 
made for inspecting and modifying DICOM files in an easy "pythonic"
way. The modifications can be written again to a new file. As a pure
python package, it should run anywhere python runs without any other
requirements.

WWW:	http://code.google.com/p/pydicom/

PR:		ports/130492
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-01-16 00:09:20 +00:00
Pav Lucistnik
d6bc85016e - Fix shlib symlink 
Reported by:	pointyhat
 2009-01-15 22:33:30 +00:00
Pav Lucistnik
53f792f735 - Mark BROKEN on FreeBSD 6.x: does not compile 
Reported by:	pointyhat
 2009-01-15 08:39:55 +00:00
Pav Lucistnik
ccd4a9cd8a - Fix plist 
Reported by:	pointyhat
 2009-01-14 15:47:27 +00:00
Martin Wilke
337f8be6fb - Update to 0.9.2 
PR:		130446
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2009-01-14 09:12:31 +00:00
Maho Nakata
e1102f2a93 Bump port revision by the former commit. 2009-01-14 06:01:32 +00:00
Maho Nakata
64a1b4d9b9 Support shared lib by tewaking. 
Suggested by: pav@
 2009-01-14 06:00:46 +00:00
Pav Lucistnik
977a9bbd90 - Update to 0.10.3 2009-01-13 18:17:55 +00:00
Pav Lucistnik
bdedf71ee0 - Remove science/gchempaint, it has been integrated into science/gchemutils 2009-01-13 18:17:29 +00:00
Maho Nakata
e9a669e728 Update to 42r3 and unbreak for 7. 
Drop maintainership to ports@.
 2009-01-13 05:30:45 +00:00
Martin Wilke
3381619583 - Chase gsl shlib bump 2009-01-12 20:37:24 +00:00
Edward Tomasz Napierala
d802bfdc9d Update to 1.5.3. 2009-01-12 20:21:31 +00:00
Maho Nakata
d70c806b84 Remove CONFIGURE_ENV 
Submitted by:	gerald@
 2009-01-11 23:16:11 +00:00
Pav Lucistnik
bf71065245 - Fix build with gfortran43 
PR:		ports/130351
Submitted by:	Stephen Montgomery-Smith <stephen@math.missouri.edu> (maintainer)
 2009-01-10 21:32:34 +00:00
Thierry Thomas
4ae98c1221 Switch to USE_FORTRAN. 
Submitted by:	gerald
 2009-01-10 14:49:34 +00:00
Gerald Pfeifer
d42cf20330 No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV, this is now done via 
Mk/bsd.gcc.mk.  And for this port, CONFIGURE_ENV was bogus to begin with.

Submitted by:	Steven Kreuzer <skreuzer@exit2shell.com>
 2009-01-10 10:56:40 +00:00
Pav Lucistnik
bce6235e6f - Unbreak distinfo after portrevision bump 2009-01-09 19:08:44 +00:00
Stefan Walter
fca77a71fa - fix inappropriate use of NO* vars 
- add MASTER_SITES
- change maintainer's email address

PR:		127463
Submitted by:	maintainer
 2009-01-08 17:13:47 +00:00
Stefan Walter
0b68f5217b - update to 1.6.0 
- fix inappropriate use of NO* vars
- add mastersites
- use COPYTREE_SHARE
- change maintainer's email address

PR:		127317
Submitted by:	maintainer
 2009-01-08 17:11:08 +00:00
Gerald Pfeifer
05a2cbc2b4 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
Pav Lucistnik
7b665df450 - Mark BROKEN: bad depobj in java3d line 
Reported by:	pointyhat
 2009-01-06 21:36:22 +00:00
Pav Lucistnik
b2a96c6df1 - Remove conditional checks for FreeBSD 5.x and older 2009-01-06 17:59:31 +00:00
Chin-San Huang
927e27a356 - remove unnecessary strip 
- install real documents
- fix NOPORTDOCS
- add NOPORTEXAMPLES

PR:			ports/129225
Submitted by:		sunpoet (maintainer)
 2009-01-02 07:53:12 +00:00
Chin-San Huang
15b1f560f3 - Remove unused pkgmessage. 
Noticed by:		sunpoet (maintainer)
 2009-01-02 07:50:54 +00:00
Chin-San Huang
28d36c53dc - Attach science/netcdf4 2009-01-01 12:20:36 +00:00
Chin-San Huang
217ba64cb8 - Update science/netcdf4 to 4.0 
PR:		ports/129418
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet dot net>
 2009-01-01 12:19:08 +00:00
Pav Lucistnik
3eb5c8ac9a Mark BROKEN on HEAD after the import of strndup(3). 
As OSVERSION was not bumped at the time, approximate with 800058.

Submitted by:	pointyhat via droso
 2008-12-26 23:09:20 +00:00
Martin Wilke
fe65c1a9be - Fix build 
PR:		129788
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
Reported by:	pointyhat
 2008-12-24 19:49:30 +00:00
Martin Wilke
6b208eade0 - Update to 0.2.0 
PR:		129652
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2008-12-22 21:10:33 +00:00
Martin Wilke
16adb49d70 - Update to 2.0.4.2 
PR:		129661
Submitted by:	Dennis Herrmann <adox@mcx2.org> (maintainer)
 2008-12-22 21:09:34 +00:00
Rong-En Fan
0bf6d5b2bf - Update to 1.33 2008-12-22 15:49:16 +00:00
Rong-En Fan
22c7ef8f29 - Add OCFLAGS to make CFLAGS the same as distribution's by default 
(this is preferable by the authors).
 2008-12-22 15:48:54 +00:00
Rong-En Fan
dc9707d19c - Update to 2.88 2008-12-22 15:46:18 +00:00
Stefan Walter
b41df28ab5 Fix plist. 
Submitted by:	QAT
 2008-12-22 10:58:03 +00:00
Stefan Walter
00e62ff3dc Update to 3.0.4. 
PR:		127905
Submitted by:	maintainer
 2008-12-21 21:07:19 +00:00
Mark Linimon
f671f7255d Reset quakelee@cn.FreeBSD.org due to maintainer-timeouts and no response 
to email.

Hat:	portmgr
 2008-12-16 05:15:41 +00:00
Martin Wilke
1b98ac97ca - Update to 2.0.4.1 
- Pass maintainership to submitter

PR:		129535
Submitted by:	Dennis Herrmann <adox@mcx2.org>
 2008-12-13 15:33:05 +00:00
Martin Wilke
417e44643e - Update to 2.4 
PR:		128980
Submitted by:	Yi-Jheng Lin <yzlin@cs.nctu.edu.tw>
Approved by:	maintainer
 2008-12-11 19:22:08 +00:00
Thierry Thomas
6537ea16e8 Upgrade to 3.4.2. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/download.html#3.4.2>.
 2008-12-10 19:16:46 +00:00
Edward Tomasz Napierala
81eeed6da9 Update to 1.5.2. 2008-12-06 16:03:58 +00:00
Chin-San Huang
68b3856b68 - Update to 1.2.1 
PR:		ports/128993
Submitted by:	sunpoet (maintainer)
 2008-11-25 17:18:00 +00:00
Martin Wilke
b8c34bedd8 - Connect hdf5-18 2008-11-24 05:35:04 +00:00
Martin Wilke
67de49e056 - Update to 1.8.2 
PR:		128988
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2008-11-24 05:29:55 +00:00
Martin Wilke
75e596beb8 - Update to 1.6.8 
PR:		128962
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2008-11-23 16:29:42 +00:00
Thierry Thomas
fe13612bf7 Fix plist with NOPORTEXAMPLES. 
Reported by:	QAT
 2008-11-22 15:37:06 +00:00
Ion-Mihai Tetcu
98e41efdae Fix typo in previous commit and fix pist. 
Prompted by:	QAT
 2008-11-22 08:19:03 +00:00
Ion-Mihai Tetcu
de7d23e628 - use PORTEXAMPLES where appropiate and fix plist with NO* defined 
- pet portlint
- bump PORTREVISION

Approved by:	maintainer timeout on QAT BotMail
Prompted by:	QAT QA run
 2008-11-22 08:04:27 +00:00
Diane Bruce
1d2850aa84 - Update to 0.99.11 [1] 
- Add hamradio to CATEGORIES
- Add beat@chruetertee.ch as MAINTAINER (confirmed with beat via e-mail)

PR:	ports/127886 [1]
 2008-11-05 17:19:33 +00:00
Dmitry Marakasov
052ff3d276 - Fix plist/installation for WITH_PYTHON case 
Submitted by:	maintainer via private email
 2008-10-30 13:02:21 +00:00
Dmitry Marakasov
aac10554de - Update to 4.6.2 
- Hide the regression-test under a MAINTAINER_MODE since skipped checks appear as failures

PR:		128447
Submitted by:	"Pedro F. Giffuni" <giffunip at tutopia dot com> (maintainer)
 2008-10-29 15:32:57 +00:00
Felippe de Meirelles Motta
c3afa705b2 - Cleanup the Makefile OPTIONS and correct some typos. 
- This is in order to prepare for the update (which currently fails some regression tests).
- No functional change.

PR:		ports/127099
Submitted by:	Pedro F. Giffuni <giffunip@tutopia.com> (maintainer)
 2008-10-19 15:59:53 +00:00
Martin Wilke
cd2b9e681e - Update to 11.6 
PR:		128047
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2008-10-15 16:16:51 +00:00
Dmitry Marakasov
105c7df4bd - Fix typo (CUNFIGURE_ARGS) 
- Add USE_XORG (needed when built without gtk)

PR:		127766
Submitted by:	me
Approved by:	Shin'ya Murakami <murashin at gfd-dennou dot org> (maintainer)
 2008-10-02 19:51:35 +00:00
Martin Wilke
022823381c Modular toolkit for Data Processing (MDP) is a Python data processing 
framework. Implemented algorithms include: Principal Component
Analysis (PCA), Independent Component Analysis (ICA), Slow Feature
Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural
Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian
Classifiers, and Restricted Boltzmann Machines.

WWW: http://mdp-toolkit.sourceforge.net/

PR:		ports/127338
Submitted by:	Li-Lun Wang <llwang at infor.org>
 2008-09-27 18:52:29 +00:00
Martin Wilke
b7fded5275 py-hcluster library provides Python functions for 
agglomerative clustering. Its features include
* generating hierarchical clusters from distance matrices
* computing distance matrices from observation vectors
* computing statistics on clusters
* cutting linkages to generate flat clusters
* and visualizing clusters with dendrograms.

The interface is very similar to MATLAB's Statistics
Toolbox API to make code easier to port from MATLAB to
Python/Numpy. The core implementation of this library
is in C for efficiency.

WWW:	http://code.google.com/p/scipy-cluster/

PR:		ports/127515
Submitted by:	Wen Heping <wenheping at gmail.com>
 2008-09-26 23:21:54 +00:00
Martin Wilke
6f612140c7 - Fix inappropriate use of NO*vars 
- Add backup mirrors
- Use COPYTREE_SHARE
- Update maintainer's email address

PR:		127315
Submitted by:	Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
 2008-09-26 09:08:12 +00:00
Martin Wilke
7566779fed - Fix inappropriate use of NO*vars 
- Add backup MASTER_SITES
- Use COPYTREE_SHARE
- Update maintainer's email address

PR:		127314
Submitted by:	Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> (maintainer)
 2008-09-26 08:54:21 +00:00
Pietro Cerutti
6a994e2840 - Set NOT_FOR_ARCHS for sparc64 
Approved by:	portmgr (pav)
 2008-09-16 09:18:28 +00:00
Pietro Cerutti
0532026395 - Update patch distribution site and fix patch procedure 
Approved by:	portmgr (erwin)
 2008-09-11 13:43:56 +00:00
Thierry Thomas
a719a43078 Fix plist with NOPORTDOCS. 
Reported by:	QAT
 2008-09-06 21:10:26 +00:00
Ying-Chieh Liao
1394a020d8 upgrade to 0.99.10 
drop maintainership
 2008-09-06 16:35:26 +00:00
Martin Wilke
eb52734aa3 - Fix build with jdk16 
PR:		127112
Submitted by:	maintainer
 2008-09-06 16:26:10 +00:00
Thierry Thomas
c731374708 Upgrade to v. 3.4.1. 
Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download.html#3.4>.
 2008-09-05 21:12:56 +00:00
Dmitry Marakasov
25d0762558 - Add experimental option for Chaco. 
- Remove BROKEN for Metis option: it builds fine
- Remove BROKENness for 4.x, we don't check that anymore.

PR:		126696
Submitted by:	Pedro Giffuni <pfgshield-freebsd at yahoo dot com>
 2008-09-05 21:09:25 +00:00
Yen-Ming Lee
305a147b16 - update to 1.07 2008-09-02 09:46:03 +00:00
Martin Wilke
150126a89e - Fix a typo 
PR:		126647
Submitted by:	Wen heping <wenheping@gmail.com> (maintainer)
 2008-08-29 14:43:16 +00:00
Pietro Cerutti
b73401b12f - Fix build 
Reported by:	QA Tindie
 2008-08-28 19:25:32 +00:00
Maho Nakata
b8a32776d9 Build fix 
Spotted by: QAT
 2008-08-23 05:41:34 +00:00
Maho Nakata
7b208c605b Update to 2.98. 2008-08-22 22:36:29 +00:00
Maho Nakata
611fb829a1 Update to 2.98. 2008-08-22 22:23:17 +00:00
Rong-En Fan
741aa71483 Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
 - Remove CONFIGURE_TARGET hack in various bsd.*.mk
 - USE_GNOME=gnometarget is now an no-op

Changes to individual ports, other than removing the CONFIGURE_TARGET hack:

= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
  - comms/gnuradio
  - science/abinit
  - science/elmer-fem
  - science/elmer-matc
  - science/elmer-meshgen2d
  - science/elmerfront
  - science/elmerpost

= use x86_64 as ARCH
  - devel/g-wrap

= other changes
  - print/magicfilter
    GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf

Total # of ports modified:  1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)

PR:		126524 (obsoletes 52917)
Submitted by:	rafan
Tested on:	two pointyhat 7-amd64 exp runs (by pav)
Approved by:	portmgr (pav)
 2008-08-21 06:18:49 +00:00
Maho Nakata
c07fcd01fb liboglappth is a support library packages for science/ghemical 
This is for the OpenGL stuff.
See also:
http://www.bioinformatics.org/pipermail/ghemical-devel/2007-September/000688.html

WWW: http://www.uku.fi/~thassine/projects/ghemical/
 2008-08-20 22:35:40 +00:00
Ade Lovett
771ea13f41 Conversion from (now defunct) autoconf-2.61 to autoconf-2.62 
Tested by:	exp build run (erwin)
 2008-08-20 00:57:32 +00:00
Thierry Thomas
83eab871cc - Upgrade to 3.2.1 and fix a vulnerability; 
- Respect NOPORTEXAMPLES;

- Release maintainership.

Security:	VuXML c4f31e16-6e33-11dd-8eb7-0011098ad87f
 2008-08-19 21:40:14 +00:00
Martin Wilke
7e265d451d - Update to 2.0.4.0 
PR:		126602
Submitted by:	Ports Fury
 2008-08-18 22:07:57 +00:00
Martin Wilke
174db41786 - Update to 11.4.6 
PR:		126586
Submitted by:	Wen heping <wenheping@gmail.com> (maintainer)
 2008-08-18 21:51:04 +00:00
Edwin Groothuis
db27e4118d science/silo add NO_LATEST_LINK 
- This port is unrelated with x11/silo so I suppose
	  NO_LATEST_LINK is relevant.
	- While here, remove the unnecessary $LOCALBASE includes
	  in CPPFLAGS/LDFLAGS for the configure environment.

PR:		ports/126614
Submitted by:	"Pedro F. Giffuni" <giffunip@tutopia.com>
 2008-08-18 06:53:42 +00:00
Edwin Groothuis
b4464eda2a [MAINTAINER] science/cdo: update to 1.2.0 
PR:		ports/126610
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
 2008-08-18 06:51:34 +00:00
Beech Rintoul
a9e6777460 - Fix PORTDOCS 2008-08-08 06:28:55 +00:00
Beech Rintoul
24103d5fe9 - Respect PORTDOCS 
Reported by:	IonBot
 2008-08-08 04:48:31 +00:00
Beech Rintoul
6546605e6b - Add experimental WITH_FORTRAN knob and a patch to have it compile. 
- It's off by default as it doesn't seem to be required by any port.
- No functional change.

PR:		ports/125915
Submitted by:	Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:	maintainer timeout (>2 Weeks)
 2008-08-07 08:29:49 +00:00
Beech Rintoul
a933145c5e - Fix build 
Submitted by:	Pedro Giffuni <pfgshield-freebsd@yahoo.com> (maintainer)
 2008-07-26 04:48:42 +00:00
Pav Lucistnik
efa63f6ba4 - Remove USE_GCC where it can be satisfied with base compiler on following 
FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
 2008-07-25 14:34:52 +00:00
Pav Lucistnik
07dc5b5098 - Desupport FreeBSD 4.x 2008-07-25 14:29:20 +00:00
Pav Lucistnik
fa38ed02cc - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 12:24:09 +00:00
Beech Rintoul
9967a8faeb - Fix plist 
- Remove options

Submitted by:	Pedro F. Giffuni <giffunip@yahoo.com> (maintainer)
Reported by:	pointyhat via pav
 2008-07-24 17:15:35 +00:00
Maho Nakata
0c34657aa5 A build fix. 2008-07-23 12:18:41 +00:00
Maho Nakata
a2a286f2cb * Update to 3.3.0. 
* Build fix with
NOPORTDOCS=yes,  NOPORTEXAMPLES=yes, NOPORTDATA=yes, FORCE_PACKAGE=yes [1].

Spotted by: itetcu [1]
 2008-07-23 09:27:10 +00:00
Beech Rintoul
4345ad9240 - Turn off the python module as it causes breakage in the build cluster. 
- While here, rename the BROWSER option to SILEXB to avoid confusion.
- No version bump since no package has been built.

PR:		ports/125846
Submitted by:	Pedro F. Giffuni <giffunip@tutopia.com>	(maintainer)
Reported by:	pointyhat via erwin
 2008-07-22 00:11:36 +00:00
Martin Wilke
0060693dbe - s/PORTREVSION/PORTREVISION 2008-07-21 10:26:09 +00:00
Rong-En Fan
fd47512c4d - Chase lang/guile share library version bump (.18 -> .19) 
- Bump PORTREVISION

PR:		ports/125435
 2008-07-21 04:49:09 +00:00
Rong-En Fan
153e80e9e5 - Fix plist when NOPORTDOCS and NOPORTEXAMPLES 2008-07-21 04:45:54 +00:00
Beech Rintoul
1ff5f0c40d - New port silo-4.6.1 
A mesh and field I/O library and scientific database

Silo is a library for reading and writing a wide variety of scientific
data to binary, disk files. The files Silo produces and the data within
them can be easily shared and exchanged between wholly independently
developed applications running on disparate computing platforms.

Consequently, Silo facilitates the development of general purpose tools
for processing scientific data. One of the more popular tools that process
Silo data files is the VisIt visualization tool.

Silo supports gridless (point) meshes, structured meshes, unstructured-zoo
and unstructured-arbitrary-polyhedral meshes, block structured AMR meshes,
constructive solid geometry (CSG) meshes, piecewise-constant (e.g.
zone-centered) and piecewise-linear (e.g. node-centered) variables defined
on the node, edge, face or volume elements of meshes as well as the
decomposition of meshes into arbitrary subset hierarchies including
materials and mixing materials. In addition, Silo supports a wide variety
of other useful objects to address various scientific computing
application needs.Although the Silo library is a serial library, it has
some key features which enable it to be applied quite effectively and
scalably in parallel.

PR:		ports/125725
Submitted by:	Pedro F. Giffuni <giffunip at tutopia.com>
 2008-07-20 21:19:13 +00:00
Beech Rintoul
296e7c6dc9 - Add regression-target since the port recommends running the checks before installing. 
- Fix distinfo
- Bump portrevision

PR:		ports/125550
Submitted by:	Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer, with changes)
 2008-07-20 20:25:18 +00:00
Martin Wilke
95f118f804 - Update to 0.51 
PR:		125633
Submitted by:	Wen heping <wenheping@gmail.com>
Approved by:	clsung (implicit)
 2008-07-19 22:32:15 +00:00
Martin Wilke
be504f9f94 This port installs python bindings for openbabel. 
WWW:	http://openbabel.sourceforge.net

PR:		ports/125768
Submitted by:	Max Brazhnikov <makc at issp.ac.ru>
 2008-07-19 14:00:33 +00:00
Martin Wilke
e88d420171 - Update to 3.2.1.2.10 
PR:		125749
Submitted by:	Wen heping <wenheping@gmail.com>
 2008-07-18 20:45:17 +00:00
Martin Wilke
f2fafd6e42 - Fix build on 6.3 
PR:		125728
Submitted by:	Max Brazhnikov <makc@issp.ac.ru>
 2008-07-18 15:49:08 +00:00
Thomas Abthorpe
0317f0a552 - Change upgrade warning 
PR:		ports/125483
Submitted by:	Anders Troback <freebsd troback.com> (maintainer)
 2008-07-14 14:57:56 +00:00
Pav Lucistnik
7baee63454 - Require GCC 4.2 on 6.x to fix build against openbabel 2008-07-10 08:27:01 +00:00
Pav Lucistnik
e0676c93a5 - Update to 0.8.7 
- Require GCC 4.2 on 6.x to fix build against openbabel
 2008-07-10 08:26:45 +00:00
Thomas Abthorpe
df7cdc6124 - Update to 3.0.1 
PR:		ports/125027
Submitted by:	Anders Troback <freebsd troback.com> (maintainer)
 2008-07-08 18:29:58 +00:00
Martin Wilke
66b3814967 - Fix build on 6.X 
Reported by:	ionbot, pavbot
Approved by:	maintainer via im
 2008-07-08 13:57:49 +00:00
Beech Rintoul
e9f29a10b7 Bump portrevision after openbabel update. 2008-07-07 00:08:33 +00:00
Beech Rintoul
335e3c706d - Update to 2.2.0 
- Pass maintainership to submitter

PR:		ports/125335
Submitted by:	Max Brazhnikov <makc@issp.ac.ru>
 2008-07-07 00:01:07 +00:00
Beech Rintoul
1af28ebde1 - Update to 1.7.0 
PR:		ports/125312
Submitted by:	Max Brazhnikov <makc@issp.ac.ru> (maintainer)
 2008-07-06 18:31:59 +00:00
Rong-En Fan
3474f23b00 - Update to 3.6.3 
PR:		ports/124871
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer)
 2008-06-25 08:32:03 +00:00
Martin Wilke
c06a438c9b - Added target for regression-test 
- This also resulted in cleanups to the build
- No functional change

PR:		124785
Submitted by:	Pedro F. Giffuni <giffunip@tutopia.com>
 2008-06-21 09:17:06 +00:00
Felippe de Meirelles Motta
2c3667dc3b - Update to 1.3. 
PR:		ports/124672
Submitted by:	Igor Serikov <bt@turtle.freedns.us> (maintainer)
Approved by:	gabor (mentor, implicit)
 2008-06-20 23:47:43 +00:00
Martin Wilke
5bc0334855 - Update to 11.4.4 
- Respect NOPORTEXAMPLE/NOPORTDOCS  [1]

PR:		124695
Submitted by:	Wen heping <wenheping@gmail.com>
		miwi [1]
 2008-06-20 14:01:18 +00:00
Rong-En Fan
bef933c956 - Update to 1.31 2008-06-06 15:56:04 +00:00
Edwin Groothuis
090059a210 Bump portrevision due to upgrade of devel/gettext. 
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
 2008-06-06 14:17:21 +00:00
Mark Linimon
d4263d8c83 Maintainer no longer has time for this one, so reassign to ports@. 2008-06-04 04:17:42 +00:00
Martin Wilke
ee2016f4e0 Pycdf is a python interface to the Unidata netCDF library. It provides an 
almost complete coverage of the netCDF C API, wrapping it inside easy to
use python classes.

WWW:  http://pysclint.sourceforge.net/pycdf/

PR:		ports/123303
Submitted by:	wenheping at gmail.com
 2008-06-03 09:41:36 +00:00
Thierry Thomas
fd2a763ea9 Upgrade to 3.4.0. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/index.en.html>.
 2008-06-03 05:52:40 +00:00
Mark Linimon
c7beea50eb Reset kay_lehmann@web.de by request due to lack to time to maintain ports. We 
appreciate all the help in the past.
 2008-06-03 02:42:06 +00:00
Rong-En Fan
686bc04862 - Update pkg-descr for recent updates 2008-06-03 02:29:39 +00:00
Rong-En Fan
a4e8cb83b3 - Update to 1.3 2008-06-03 02:00:05 +00:00
Martin Wilke
5ae81a386a - Update to 2.1 
- Pass maintainership to submitter

PR:		124178
Submitted by:	Wen heping <wenheping@gmail.com>
 2008-06-01 12:48:13 +00:00
Martin Wilke
fb5eba2512 - Enable Fortran support [1] 
- Fix NOPORTEXAMPLES

PR:		121731
Submitted by:	TAOKA Fumiyoshi <fmysh@iijmio-mail.jp> [1]
		miwi
Approved by:	maintainer
 2008-05-31 22:42:50 +00:00
Martin Wilke
18dd6954f3 - Add common code to support for cmake based ports. 
- Update devel/cmake to 2.6.0 (also fix ports/123092)
- Use the new CMAKE build framework in all ports using cmake

Approved by:	portmgr (pav)
 2008-05-27 22:12:09 +00:00
Thierry Thomas
fa87061592 Introduce NOPORTEXAMPLES. 
Suggested by:	itetcu
 2008-05-25 21:49:03 +00:00