Brian is a simulator for spiking neural networks available on almost all
platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. Brian is easy to learn and use, highly flexible and easily extensible. The Brian package itself and simulations using it are all written in the Python programming language, which is an easy, concise and highly developed language with many advanced features and development tools, excellent documentation and a large community of users providing support and extension packages. WWW: http://www.briansimulator.org/ PR: ports/132155 Submitted by: Wen Heping <wenheping@gmail.com>
This commit is contained in:
Martin Wilke
parent
b2a42b6d4e
commit
10b7f51c54
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=230182
@ -12,6 +12,7 @@
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SUBDIR += bblimage
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SUBDIR += bft
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SUBDIR += bodr
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SUBDIR += brian
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SUBDIR += buddy
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SUBDIR += cdcl
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SUBDIR += cdf
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26
science/brian/Makefile
Normal file
26
science/brian/Makefile
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@ -0,0 +1,26 @@
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# Ports collection makefile for: brian
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# Date created: 27 Feb, 2009
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# Whom: wenheping@gmail.com
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#
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# $FreeBSD$
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#
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PORTNAME= brian
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PORTVERSION= 1.1.2
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CATEGORIES= science python
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MASTER_SITES= CHEESESHOP \
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SF
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MAINTAINER= wenheping@gmail.com
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COMMENT= A clock-driven simulator for spiking neural networks
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BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.1.0:${PORTSDIR}/math/py-numpy \
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${PYTHON_PKGNAMEPREFIX}scipy>=0.6.0:${PORTSDIR}/science/py-scipy \
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${PYTHON_PKGNAMEPREFIX}matplotlib>=0.90.1:${PORTSDIR}/math/py-matplotlib
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RUN_DEPENDS= ${BUILD_DEPENDS}
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USE_ZIP= yes
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USE_PYTHON= 2.5+
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USE_PYDISTUTILS= yes
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.include <bsd.port.mk>
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3
science/brian/distinfo
Normal file
3
science/brian/distinfo
Normal file
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MD5 (brian-1.1.2.zip) = 97ada49eb33a314581d34be034e563b1
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SHA256 (brian-1.1.2.zip) = ca283df1d49cd111650b78a75b7ac14a655e5db8507804e623e4b34a2bef08b7
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SIZE (brian-1.1.2.zip) = 308367
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12
science/brian/pkg-descr
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12
science/brian/pkg-descr
Normal file
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Brian is a simulator for spiking neural networks available on almost all
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platforms. The motivation for this project is that a simulator should
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not only save the time of processors, but also the time of scientists.
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Brian is easy to learn and use, highly flexible and easily extensible.
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The Brian package itself and simulations using it are all written in
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the Python programming language, which is an easy, concise and highly
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developed language with many advanced features and development tools,
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excellent documentation and a large community of users providing support
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and extension packages.
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WWW: http://www.briansimulator.org/
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221
science/brian/pkg-plist
Normal file
221
science/brian/pkg-plist
Normal file
@ -0,0 +1,221 @@
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%%PYTHON_SITELIBDIR%%/brian/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/base.py
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%%PYTHON_SITELIBDIR%%/brian/base.pyc
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%%PYTHON_SITELIBDIR%%/brian/base.pyo
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%%PYTHON_SITELIBDIR%%/brian_unit_prefs.py
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%%PYTHON_SITELIBDIR%%/brian_no_units.py
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%%PYTHON_SITELIBDIR%%/brian_no_units_no_warnings.py
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%%PYTHON_SITELIBDIR%%/brian_unit_prefs.pyc
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%%PYTHON_SITELIBDIR%%/brian_no_units.pyc
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%%PYTHON_SITELIBDIR%%/brian_no_units_no_warnings.pyc
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%%PYTHON_SITELIBDIR%%/brian_unit_prefs.pyo
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%%PYTHON_SITELIBDIR%%/brian_no_units.pyo
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%%PYTHON_SITELIBDIR%%/brian_no_units_no_warnings.pyo
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%%PYTHON_SITELIBDIR%%/brian/clock.py
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%%PYTHON_SITELIBDIR%%/brian/clock.pyc
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%%PYTHON_SITELIBDIR%%/brian/clock.pyo
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%%PYTHON_SITELIBDIR%%/brian/compartments.py
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%%PYTHON_SITELIBDIR%%/brian/compartments.pyc
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%%PYTHON_SITELIBDIR%%/brian/compartments.pyo
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%%PYTHON_SITELIBDIR%%/brian/connection.py
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%%PYTHON_SITELIBDIR%%/brian/connection.pyc
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%%PYTHON_SITELIBDIR%%/brian/connection.pyo
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%%PYTHON_SITELIBDIR%%/brian/correlatedspikes.py
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%%PYTHON_SITELIBDIR%%/brian/correlatedspikes.pyc
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%%PYTHON_SITELIBDIR%%/brian/correlatedspikes.pyo
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%%PYTHON_SITELIBDIR%%/brian/credits.py
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%%PYTHON_SITELIBDIR%%/brian/credits.pyc
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%%PYTHON_SITELIBDIR%%/brian/credits.pyo
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%%PYTHON_SITELIBDIR%%/brian/directcontrol.py
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%%PYTHON_SITELIBDIR%%/brian/directcontrol.pyc
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%%PYTHON_SITELIBDIR%%/brian/directcontrol.pyo
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%%PYTHON_SITELIBDIR%%/brian/equations.py
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%%PYTHON_SITELIBDIR%%/brian/equations.pyc
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%%PYTHON_SITELIBDIR%%/brian/equations.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/ccodegen.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/ccodegen.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/ccodegen.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster_client.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster_client.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/cluster_client.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/coincidence_detection.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/coincidence_detection.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/coincidence_detection.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/buffering.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/buffering.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/buffering.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/gpucodegen.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/gpucodegen.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/cuda/gpucodegen.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/integrodiff.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/integrodiff.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/integrodiff.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/morphology.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/morphology.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/morphology.pyo
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%%PYTHON_SITELIBDIR%%/brian/experimental/multilinearstateupdater.py
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%%PYTHON_SITELIBDIR%%/brian/experimental/multilinearstateupdater.pyc
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%%PYTHON_SITELIBDIR%%/brian/experimental/multilinearstateupdater.pyo
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%%PYTHON_SITELIBDIR%%/brian/globalprefs.py
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%%PYTHON_SITELIBDIR%%/brian/globalprefs.pyc
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%%PYTHON_SITELIBDIR%%/brian/globalprefs.pyo
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%%PYTHON_SITELIBDIR%%/brian/group.py
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%%PYTHON_SITELIBDIR%%/brian/group.pyc
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%%PYTHON_SITELIBDIR%%/brian/group.pyo
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%%PYTHON_SITELIBDIR%%/brian/inspection.py
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%%PYTHON_SITELIBDIR%%/brian/inspection.pyc
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%%PYTHON_SITELIBDIR%%/brian/inspection.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/IF.py
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%%PYTHON_SITELIBDIR%%/brian/library/IF.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/IF.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/library/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/electrophysiology.py
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%%PYTHON_SITELIBDIR%%/brian/library/electrophysiology.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/electrophysiology.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/ionic_currents.py
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%%PYTHON_SITELIBDIR%%/brian/library/ionic_currents.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/ionic_currents.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/random_processes.py
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%%PYTHON_SITELIBDIR%%/brian/library/random_processes.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/random_processes.pyo
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%%PYTHON_SITELIBDIR%%/brian/library/synapses.py
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%%PYTHON_SITELIBDIR%%/brian/library/synapses.pyc
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%%PYTHON_SITELIBDIR%%/brian/library/synapses.pyo
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%%PYTHON_SITELIBDIR%%/brian/log.py
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%%PYTHON_SITELIBDIR%%/brian/log.pyc
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%%PYTHON_SITELIBDIR%%/brian/log.pyo
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%%PYTHON_SITELIBDIR%%/brian/magic.py
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%%PYTHON_SITELIBDIR%%/brian/magic.pyc
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%%PYTHON_SITELIBDIR%%/brian/magic.pyo
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%%PYTHON_SITELIBDIR%%/brian/membrane_equations.py
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%%PYTHON_SITELIBDIR%%/brian/membrane_equations.pyc
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%%PYTHON_SITELIBDIR%%/brian/membrane_equations.pyo
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%%PYTHON_SITELIBDIR%%/brian/monitor.py
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%%PYTHON_SITELIBDIR%%/brian/monitor.pyc
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%%PYTHON_SITELIBDIR%%/brian/monitor.pyo
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||||
%%PYTHON_SITELIBDIR%%/brian/network.py
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%%PYTHON_SITELIBDIR%%/brian/network.pyc
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%%PYTHON_SITELIBDIR%%/brian/network.pyo
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%%PYTHON_SITELIBDIR%%/brian/neurongroup.py
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%%PYTHON_SITELIBDIR%%/brian/neurongroup.pyc
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%%PYTHON_SITELIBDIR%%/brian/neurongroup.pyo
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%%PYTHON_SITELIBDIR%%/brian/neuronmodel.py
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%%PYTHON_SITELIBDIR%%/brian/neuronmodel.pyc
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%%PYTHON_SITELIBDIR%%/brian/neuronmodel.pyo
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%%PYTHON_SITELIBDIR%%/brian/optimiser.py
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%%PYTHON_SITELIBDIR%%/brian/optimiser.pyc
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%%PYTHON_SITELIBDIR%%/brian/optimiser.pyo
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%%PYTHON_SITELIBDIR%%/brian/plotting.py
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%%PYTHON_SITELIBDIR%%/brian/plotting.pyc
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%%PYTHON_SITELIBDIR%%/brian/plotting.pyo
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%%PYTHON_SITELIBDIR%%/brian/quantityarray.py
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%%PYTHON_SITELIBDIR%%/brian/quantityarray.pyc
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%%PYTHON_SITELIBDIR%%/brian/quantityarray.pyo
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%%PYTHON_SITELIBDIR%%/brian/reset.py
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%%PYTHON_SITELIBDIR%%/brian/reset.pyc
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%%PYTHON_SITELIBDIR%%/brian/reset.pyo
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%%PYTHON_SITELIBDIR%%/brian/stateupdater.py
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%%PYTHON_SITELIBDIR%%/brian/stateupdater.pyc
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%%PYTHON_SITELIBDIR%%/brian/stateupdater.pyo
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%%PYTHON_SITELIBDIR%%/brian/stdp.py
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%%PYTHON_SITELIBDIR%%/brian/stdp.pyc
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%%PYTHON_SITELIBDIR%%/brian/stdp.pyo
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%%PYTHON_SITELIBDIR%%/brian/stdunits.py
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%%PYTHON_SITELIBDIR%%/brian/stdunits.pyc
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%%PYTHON_SITELIBDIR%%/brian/stdunits.pyo
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%%PYTHON_SITELIBDIR%%/brian/stp.py
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%%PYTHON_SITELIBDIR%%/brian/stp.pyc
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%%PYTHON_SITELIBDIR%%/brian/stp.pyo
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%%PYTHON_SITELIBDIR%%/brian/tests/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/tests/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/tests/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/tests/testinterface.py
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%%PYTHON_SITELIBDIR%%/brian/tests/testinterface.pyc
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%%PYTHON_SITELIBDIR%%/brian/tests/testinterface.pyo
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%%PYTHON_SITELIBDIR%%/brian/tests/testverification.py
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%%PYTHON_SITELIBDIR%%/brian/tests/testverification.pyc
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%%PYTHON_SITELIBDIR%%/brian/tests/testverification.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/threshold.py
|
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%%PYTHON_SITELIBDIR%%/brian/threshold.pyc
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||||
%%PYTHON_SITELIBDIR%%/brian/threshold.pyo
|
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%%PYTHON_SITELIBDIR%%/brian/units.py
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%%PYTHON_SITELIBDIR%%/brian/units.pyc
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%%PYTHON_SITELIBDIR%%/brian/units.pyo
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||||
%%PYTHON_SITELIBDIR%%/brian/unitsafefunctions.py
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||||
%%PYTHON_SITELIBDIR%%/brian/unitsafefunctions.pyc
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||||
%%PYTHON_SITELIBDIR%%/brian/unitsafefunctions.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/utils/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/utils/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/approximatecomparisons.py
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%%PYTHON_SITELIBDIR%%/brian/utils/approximatecomparisons.pyc
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||||
%%PYTHON_SITELIBDIR%%/brian/utils/approximatecomparisons.pyo
|
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%%PYTHON_SITELIBDIR%%/brian/utils/autodiff.py
|
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%%PYTHON_SITELIBDIR%%/brian/utils/autodiff.pyc
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%%PYTHON_SITELIBDIR%%/brian/utils/autodiff.pyo
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||||
%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/__init__.py
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/__init__.pyc
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/__init__.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/ccircular.py
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/ccircular.pyc
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/ccircular.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/setup.py
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%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/setup.pyc
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||||
%%PYTHON_SITELIBDIR%%/brian/utils/ccircular/setup.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/circular.py
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%%PYTHON_SITELIBDIR%%/brian/utils/circular.pyc
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%%PYTHON_SITELIBDIR%%/brian/utils/circular.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/documentation.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/documentation.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/documentation.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/__init__.py
|
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%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/__init__.pyc
|
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%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/__init__.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/fastexp.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/fastexp.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/fastexp.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/setup.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/setup.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/setup.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp.py
|
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%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp2.py
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%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp2.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/fastexp/testfastexp2.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/information_theory.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/information_theory.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/information_theory.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/parallelpython.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/parallelpython.pyc
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||||
%%PYTHON_SITELIBDIR%%/brian/utils/parallelpython.pyo
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||||
%%PYTHON_SITELIBDIR%%/brian/utils/parameters.py
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%%PYTHON_SITELIBDIR%%/brian/utils/parameters.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/parameters.pyo
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%%PYTHON_SITELIBDIR%%/brian/utils/statistics.py
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%%PYTHON_SITELIBDIR%%/brian/utils/statistics.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/statistics.pyo
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/tabulate.py
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/tabulate.pyc
|
||||
%%PYTHON_SITELIBDIR%%/brian/utils/tabulate.pyo
|
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@dirrm %%PYTHON_SITELIBDIR%%/brian/experimental/cuda
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/experimental
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/library
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/tests
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/utils/ccircular
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/utils/fastexp
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@dirrm %%PYTHON_SITELIBDIR%%/brian/utils
|
||||
@dirrm %%PYTHON_SITELIBDIR%%/brian/
|
||||
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