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Nikolai Lifanov be3b7a5a79 add science/libgeodecomp - auto-parallelizing library for computer simulations 
LibGeoDecomp (Library for Geometric Decomposition codes) is an
auto-parallelizing library for computer simulations. It is specifically targeted
computational science applications in the context of supercomputers and
heterogeneous systems. The library eases development of such tightly coupled
codes by essentially taking over the parallel programming: it handles both, the
parallelization itself and parameter tuning. This enables scientists to focus on
their simulation code, rather than the technical details of the parallel
computer.

PR:		213688
Submitted by:	Kurt Kanzenbach <kurt@kmk-computers.de>
Reviewed by:	matthew
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D9390
2017-01-31 23:37:58 +00:00
..
2d-rewriter
afni
avogadro devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bddsolve devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bft
bodr
brian
buddy
cdcl Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
cdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cdo - Add UUID option 2016-12-17 12:57:36 +00:00
cgnslib Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cgribex Add JASPER and SZLIB options 2017-01-29 16:04:48 +00:00
checkmol
chemical-mime-data
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++
dcl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
devisor
dlpoly-classic Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ecs
epte
fastcap
fasthenry
fisicalab
fvcom Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
fvcom-mpi
fvm Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
gchemutils Update gchemutils to 0.14.16. 2016-12-31 19:43:21 +00:00
getdp getdp builds fine with bsd make 2016-12-10 18:38:34 +00:00
ghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ghmm
gnudatalanguage Upgrade GDL to 0.9.7v2. 2017-01-15 18:34:52 +00:00
gramps science/gramps: Update to 4.2.5 2016-12-19 12:52:40 +00:00
grib_api Update to 1.19.0 2017-01-02 15:11:27 +00:00
gromacs devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer
gwyddion
h5utils
harminv Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5-18 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hs-bio
InsightToolkit
isaac-cfd Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium
kst2
lamprop
libaec Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
libctl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libgeodecomp add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00
libghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libint
libkml Update to 1.3.0 2017-01-12 20:02:17 +00:00
liblinear
liboglappth
libquantum
libsvm
libsvm-python
libxc - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
linsmith
massxpert
mbdyn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit
meep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
mei
metaf2xml
minc2
mol2ps
mpb Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc-mpich
ncs Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
netcdf
netcdf-cxx
netcdf-fortran Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: unbreak with GCC >= 6 2017-01-21 23:12:18 +00:00
openkim Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
orthanc devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-dicomweb devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-postgresql devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-webviewer devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements - Update to 1.071 2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol
p5-Physics-Unit Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
paje
paraview - Update to 5.2.0 2017-01-10 10:59:01 +00:00
pnetcdf Update to 1.8.1 2017-01-30 21:42:17 +00:00
psychopy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
pulseview devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
py-cdo
py-coards
py-DendroPy
py-h5py
py-hcluster
py-mdp
py-mlpy
py-netCDF4
py-obspy - Update sqlalchemy dependency 2016-12-12 02:28:44 +00:00
py-paida
py-pupynere
py-pyaixi
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal - Update to 1.13.0 2016-12-12 20:58:04 +00:00
py-pyteomics Update to 3.4 2016-12-01 23:52:38 +00:00
py-pyteomics.biolccc
py-scikit-fuzzy
py-scikit-learn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scikit-sparse Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scimath
py-scipy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain
pycdf
pynn - Update to 0.8.2 2016-12-28 08:01:30 +00:00
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-snow
R-cran-som
rubygem-ai4r
rubygem-cdo - Update to 1.3.2 2016-12-03 19:34:30 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Get rid of QT_PREFIX in favour of PREFIX. 2016-12-18 22:06:50 +00:00
simlib
simsmith
step
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
tfel - Update to 2.0.4 2017-01-19 18:14:22 +00:00
udunits Update to 2.2.24 2017-01-25 16:31:27 +00:00
v_sim Change the site address. 2017-01-16 21:38:39 +00:00
veusz
vmd science/vmd: correct the wording of numpy keyword 2017-01-09 06:03:05 +00:00
voro++
xfce4-equake-plugin Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
xmakemol
Makefile add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00