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abyss
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Drop dependency on devel/openmp
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2020-03-08 21:56:36 +00:00 |
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artemis
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avida
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babel
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bamtools
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devel/jsoncpp: Update 1.8.1 -> 1.9.2
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2020-01-13 21:38:35 +00:00 |
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bcftools
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bedtools
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biology/bedtools: Upgrade to 2.29.2
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2019-12-19 01:04:11 +00:00 |
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biococoa
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Return theraven's ports to the pool after safekeeping his commit bit.
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2020-03-05 20:49:05 +00:00 |
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bolt-lmm
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Fix math/openblas and bump dependent ports
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2020-01-30 14:17:44 +00:00 |
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bowtie
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bowtie2
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biology/bowtie2: Upgrade to 2.4.1
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2020-03-01 16:01:12 +00:00 |
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bwa
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canu
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biology/canu: Upgrade to 2.0
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2020-03-20 18:14:23 +00:00 |
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cd-hit
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cdbfasta
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checkm
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clustal-omega
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clustalw
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consed
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cufflinks
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devel/boost-*: update to 1.72.0
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2019-12-11 17:53:48 +00:00 |
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cytoscape
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ddocent
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diamond
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biology/diamond: Update to version 0.9.31.2
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2020-03-21 22:11:25 +00:00 |
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dsr-pdb
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devel/boost-*: update to 1.72.0
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2019-12-11 17:53:48 +00:00 |
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emboss
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exonerate
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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fastqc
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fasttree
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fastx-toolkit
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figtree
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fluctuate
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freebayes
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garlic
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gatk
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biology/gatk: Update 4.1.4.1 -> 4.1.5.0
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2020-03-04 08:47:55 +00:00 |
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gemma
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Fix math/openblas and bump dependent ports
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2020-01-30 14:17:44 +00:00 |
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gff2ps
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gmap
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gperiodic
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- Update WWW
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2020-01-19 09:30:22 +00:00 |
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graphlan
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Deprecate a few ports
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2020-02-23 15:25:53 +00:00 |
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grappa
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groopm
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Deprecate a few ports
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2020-02-23 15:25:53 +00:00 |
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haplohseq
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Deprecate some ports using deprecated version of python
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2020-03-08 17:01:46 +00:00 |
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hhsuite
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Drop dependency on devel/openmp
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2020-03-08 21:56:36 +00:00 |
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hisat2
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hmmer
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biology/hmmer: update to 3.3
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2020-01-29 05:55:12 +00:00 |
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htslib
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hyphy
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biology/hyphy: Update to version 2.5.8
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2020-03-28 12:27:11 +00:00 |
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igv
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Deprecate java/openjfx8-devel consumers
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2020-03-19 09:33:13 +00:00 |
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infernal
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biology/infernal: update to 1.1.3
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2020-01-27 17:57:14 +00:00 |
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iolib
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iqtree
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jalview
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jellyfish
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biology/jellyfish: Patch for clang 10
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2020-03-07 19:25:54 +00:00 |
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kallisto
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biology/kallisto: Upgrade to 0.46.2
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2020-02-15 23:09:19 +00:00 |
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lagan
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lamarc
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libbigwig
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libgtextutils
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libsbml
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Clean up Makefile
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2020-02-08 19:01:40 +00:00 |
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linux-foldingathome
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Load appropriate Linuxulator bits automatically when starting service
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2020-03-23 15:30:05 +00:00 |
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mafft
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mapm3
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migrate
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minimap2
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molden
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mopac
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mothur
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mrbayes
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biology/mrbayes: Update to version 3.2.7
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2020-02-29 23:24:39 +00:00 |
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mummer
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muscle
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biology/muscle: unbreak in -CURRENT
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2020-01-17 16:49:03 +00:00 |
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ncbi-blast+
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biology/ncbi-blast+: Upgrade to 2.10.0
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2019-12-26 16:21:17 +00:00 |
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ncbi-cxx-toolkit
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ncbi-toolkit
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ngs-sdk
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biology/ngs-sdk: Update 2.10.2 -> 2.10.4
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2020-03-07 19:58:39 +00:00 |
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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Update *_DEPENDS
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2020-01-08 18:36:30 +00:00 |
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p5-Bio-Cluster
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Update *_DEPENDS
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2019-12-08 16:57:18 +00:00 |
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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Add p5-Bio-DB-EMBL 1.7.4
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2019-12-08 16:49:19 +00:00 |
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p5-Bio-DB-NCBIHelper
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Add p5-Bio-DB-NCBIHelper 1.7.6
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2019-12-08 16:49:25 +00:00 |
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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Update to 1.7.5
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2020-01-08 18:36:35 +00:00 |
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p5-BioPerl
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Update to 1.007007 (1.7.7)
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2019-12-08 16:57:23 +00:00 |
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p5-BioPerl-Run
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Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over 3 years ago
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2020-01-08 18:36:40 +00:00 |
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p5-transdecoder
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p5-TrimGalore
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paml
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pbbam
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devel/boost-*: update to 1.72.0
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2019-12-11 17:53:48 +00:00 |
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pbcopper
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Mark BROKEN: fails to build
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2020-03-10 14:17:19 +00:00 |
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pbseqan
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pear-merger
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phrap
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phred
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phylip
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phyml
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plinkseq
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primer3
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prodigal
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prodigy-lig
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protomol
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psi88
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py-biom-format
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Deprecate a few ports
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2020-02-23 15:25:53 +00:00 |
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py-biopython
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py-bx-python
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biology/py-bx-python: Update 0.8.6 -> 0.8.8
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2020-02-15 20:08:30 +00:00 |
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py-cutadapt
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py-dnaio
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py-fastTSNE
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Drop dependency on devel/openmp
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2020-03-08 21:56:36 +00:00 |
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py-Genesis-PyAPI
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py-gffutils
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biology/py-gffutils: Update 0.9 -> 0.10
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2019-12-31 05:16:09 +00:00 |
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py-gtfparse
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py-loompy
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py-macs2
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biology/py-macs2: Bump revision for previous run dep addition
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2020-02-09 14:23:43 +00:00 |
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py-multiqc
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py-orange3-bioinformatics
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py-orange3-single-cell
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py-pyfaidx
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py-pysam
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biology/py-pysam: Update 0.15.3 -> 0.15.4
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2020-01-23 02:53:09 +00:00 |
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py-xenaPython
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pyfasta
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python-nexus
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rainbow
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recombine
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ruby-bio
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rubygem-bio
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samtools
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seaview
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biology/seaview: Update version 5.0=>5.0.2
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2020-03-22 16:54:04 +00:00 |
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seqan
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seqan1
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seqan-apps
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devel/boost-*: update to 1.72.0
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2019-12-11 17:53:48 +00:00 |
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seqio
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seqtk
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seqtools
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sim4
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slclust
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smithwaterman
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stacks
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star
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stringtie
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biology/stringtie: fix build on GCC architectures
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2020-02-23 10:52:44 +00:00 |
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t_coffee
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tabixpp
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tophat
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Deprecate some ports using deprecated version of python
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2020-03-08 17:01:46 +00:00 |
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treekin
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Fix math/openblas and bump dependent ports
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2020-01-30 14:17:44 +00:00 |
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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biology/tRNAscan-SE: update to 2.0.5
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2020-01-13 17:36:57 +00:00 |
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ugene
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vcflib
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vcftools
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velvet
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viennarna
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biology/viennarna: Update 2.4.13 -> 2.4.14
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2020-01-06 04:17:48 +00:00 |
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vsearch
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biology/vsearch: Upgrade to 2.14.2
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2020-02-19 22:34:36 +00:00 |
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wise
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Makefile
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Resurrect biology/linux-foldingathome
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2020-03-21 23:03:05 +00:00 |
