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Fix math/openblas and bump dependent ports

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* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
This commit is contained in:
Steve Wills 2020-01-30 14:17:44 +00:00
parent c272497917
commit fb44dca45d
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=524642
90 changed files with 129 additions and 167 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
biology/bolt-lmm/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= bolt-lmm
DISTVERSION= 2.3.4
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
DISTNAME= BOLT-LMM_v${PORTVERSION}

2
biology/gemma/Makefile
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@ -2,7 +2,7 @@
PORTNAME= gemma
DISTVERSION= 0.98.1
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

2
biology/treekin/Makefile
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@ -2,7 +2,7 @@
PORTNAME= treekin
DISTVERSION= 0.5.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/packages/source/
DISTNAME= Treekin-${DISTVERSION}

2
cad/calculix-ccx/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= ccx
PORTVERSION= 2.16
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= cad
MASTER_SITES= http://www.dhondt.de/
PKGNAMEPREFIX= CalculiX-

2
cad/gmsh/Makefile
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@ -3,7 +3,7 @@
PORTNAME= gmsh
DISTVERSION= 4.3.0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= cad
MASTER_SITES= http://gmsh.info/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source

2
cad/pdnmesh/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= pdnmesh
PORTVERSION= 0.2.2
PORTREVISION= 17
PORTREVISION= 18
CATEGORIES= cad
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}-source/${PORTVERSION}

2
databases/grass7/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= grass
PORTVERSION= 7.6.1
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= databases geography
MASTER_SITES= https://grass.osgeo.org/%SUBDIR%/ \
http://grass.cict.fr/%SUBDIR%/ \

2
devel/ocaml-lacaml/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= lacaml
PORTVERSION= 8.0.7
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= devel
MASTER_SITES= https://github.com/mmottl/lacaml/releases/download/v${PORTVERSION}/
PKGNAMEPREFIX= ocaml-

2
games/leela-zero/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= leela-zero
DISTVERSIONPREFIX= v
DISTVERSION= 0.17
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= games
MAINTAINER= yuri@FreeBSD.org

2
graphics/caffe/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= caffe
PORTVERSION= 1.0
PORTREVISION= 30
PORTREVISION= 31
CATEGORIES= graphics
MAINTAINER= eric@camachat.org

2
graphics/gimp-refocus-plugin/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= refocus
PORTVERSION= 0.9.0
PORTREVISION= 10
PORTREVISION= 11
CATEGORIES= graphics
MASTER_SITES= SF
PKGNAMEPREFIX= gimp-

2
lang/julia06/Makefile
View File

@ -4,7 +4,7 @@
PORTNAME= julia
PORTVERSION= 0.6.4
DISTVERSIONSUFFIX= -full
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= lang math
MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/
PKGNAMESUFFIX= 06

2
lang/julia07/Makefile
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@ -4,7 +4,7 @@
PORTNAME= julia
PORTVERSION= 0.7.0
DISTVERSIONSUFFIX= -full
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= lang math
MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/
PKGNAMESUFFIX= 07

2
lang/julia10/Makefile
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@ -3,7 +3,7 @@
PORTNAME= julia
PORTVERSION= 1.0.4
PORTREVISION= 1
PORTREVISION= 2
DISTVERSIONSUFFIX= -full
CATEGORIES= lang math
MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/

2
lang/julia11/Makefile
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@ -3,7 +3,7 @@
PORTNAME= julia
PORTVERSION= 1.1.1
PORTREVISION= 1
PORTREVISION= 2
DISTVERSIONSUFFIX= -full
CATEGORIES= lang math
MASTER_SITES= https://github.com/JuliaLang/julia/releases/download/v${PORTVERSION}/

1
mail/rspamd-devel/Makefile
View File

@ -2,6 +2,7 @@
PORTNAME= rspamd
PORTVERSION= 2.3.a1.20191120
PORTREVISION= 1
CATEGORIES= mail
PKGNAMESUFFIX= -devel

1
mail/rspamd/Makefile
View File

@ -2,6 +2,7 @@
PORTNAME= rspamd
PORTVERSION= 2.2
PORTREVISION= 1
CATEGORIES= mail
MAINTAINER= vsevolod@FreeBSD.org

1
math/R/Makefile
View File

@ -3,6 +3,7 @@
PORTNAME= R
DISTVERSION= 3.6.2
PORTREVISION= 1
CATEGORIES= math lang
MASTER_SITES= CRAN/src/base/R-${PORTVERSION:C|\..*||}

2
math/adept/Makefile
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@ -2,7 +2,7 @@
PORTNAME= adept
DISTVERSION= 2.0.5
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= math
MASTER_SITES= http://www.met.reading.ac.uk/clouds/adept/

1
math/ambit/Makefile
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@ -3,6 +3,7 @@
PORTNAME= ambit
DISTVERSIONPREFIX= v
DISTVERSION= 0.4
PORTREVISION= 1
CATEGORIES= math
PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit

2
math/armadillo/Makefile
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@ -2,7 +2,7 @@
PORTNAME= armadillo
PORTVERSION= 9.600.4
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math
MASTER_SITES= SF/arma

2
math/blaze/Makefile
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@ -2,7 +2,7 @@
PORTNAME= blaze
DISTVERSION= 3.5
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= math
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/downloads/

2
math/blazeiterative/Makefile
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@ -2,7 +2,7 @@
PORTNAME= blazeiterative
PORTVERSION= g20180409
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/blocksolve95/Makefile
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@ -3,7 +3,7 @@
PORTNAME= blocksolve95
PORTVERSION= 3.0
PORTREVISION= 25
PORTREVISION= 26
CATEGORIES= math parallel
MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/BlockSolve95/ \
http://ftp.mcs.anl.gov/pub/BlockSolve95/

1
math/bonmin/Makefile
View File

@ -3,6 +3,7 @@
PORTNAME= bonmin
DISTVERSIONPREFIX= releases/
DISTVERSION= 1.8.7
PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= coin-or-

1
math/casadi/Makefile
View File

@ -2,6 +2,7 @@
PORTNAME= casadi
DISTVERSION= 3.5.1
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/ceres-solver/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= ceres-solver
DISTVERSION= 1.14.0
PORTREVISION= 15
PORTREVISION= 16
CATEGORIES= math
MAINTAINER= jbeich@FreeBSD.org

1
math/clp/Makefile
View File

@ -3,6 +3,7 @@
PORTNAME= Clp
DISTVERSION= 1.17.3
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= http://www.coin-or.org/download/source/${PORTNAME}/ \
http://www.mavetju.org/download/adopted/

2
math/cminpack/Makefile
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@ -3,7 +3,7 @@
PORTNAME= cminpack
PORTVERSION= 1.3.6
DISTVERSIONPREFIX= v
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math
MAINTAINER= fernape@FreeBSD.org

2
math/coinmp/Makefile
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@ -3,7 +3,7 @@
PORTNAME= CoinMP
PORTVERSION= 1.8.4
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= http://www.coin-or.org/download/source/CoinMP/

1
math/coinutils/Makefile
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@ -2,6 +2,7 @@
PORTNAME= CoinUtils
DISTVERSION= 2.11.3
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/
PKGNAMEPREFIX= coin-or-

1
math/couenne/Makefile
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@ -3,6 +3,7 @@
PORTNAME= couenne
DISTVERSIONPREFIX= releases/
DISTVERSION= 0.5.7
PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= coin-or-

1
math/dbcsr/Makefile
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@ -3,6 +3,7 @@
PORTNAME= dbcsr
DISTVERSIONPREFIX= v
DISTVERSION= 2.0.1
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/deal.ii/Makefile
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@ -3,7 +3,7 @@
PORTNAME= deal.II
DISTVERSIONPREFIX= v
DISTVERSION= 9.1.1
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

1
math/elpa/Makefile
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@ -2,6 +2,7 @@
PORTNAME= elpa
DISTVERSION= 2019.05.002
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= http://elpa.mpcdf.mpg.de/html/Releases/${DISTVERSION}/

1
math/g2o/Makefile
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@ -2,6 +2,7 @@
PORTNAME= g2o
DISTVERSION= 20170730_git-239
PORTREVISION= 1
DISTVERSIONSUFFIX= -ge7b5b7a
CATEGORIES= math

1
math/giacxcas/Makefile
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@ -3,6 +3,7 @@
PORTNAME= giacxcas
DISTVERSION= 1.5.0-69
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= http://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/:giac \
http://www-fourier.ujf-grenoble.fr/~parisse/giac/freebsd/

2
math/hmat-oss/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= hmat-oss
DISTVERSION= 1.5.0-348
DISTVERSIONSUFFIX= -g76beaf3
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/ipopt/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= Ipopt
DISTVERSION= 3.12.13
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= https://www.coin-or.org/download/source/Ipopt/ \
http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/:metis \

2
math/jags/Makefile
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@ -3,7 +3,7 @@
PORTNAME= mcmc-jags
DISTVERSION= 4.3.0
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= math
MASTER_SITES= SF/mcmc-jags/JAGS/${S}.x/Source/:1 \
SF/mcmc-jags/Examples/${S}.x/:2 \

2
math/lapack++/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= lapack++
PORTVERSION= 2.5.4
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= math
MASTER_SITES= SF/lapackpp \
http://math.nist.gov/lapack++/:doc

2
math/lapack95/Makefile
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@ -3,7 +3,7 @@
PORTNAME= lapack95
PORTVERSION= 1.0
PORTREVISION= 18
PORTREVISION= 19
CATEGORIES= math
MASTER_SITES= NL
DISTNAME= ${PORTNAME}

2
math/levmar/Makefile
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@ -3,7 +3,7 @@
PORTNAME= levmar
PORTVERSION= 2.6
PORTREVISION= 12
PORTREVISION= 13
CATEGORIES= math
MASTER_SITES= http://users.ics.forth.gr/~lourakis/levmar/

2
math/moab/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= moab
DISTVERSION= 5.0.0
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= math
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/

2
math/octave-forge-ltfat/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= octave-forge-ltfat
PORTVERSION= 2.3.1
PORTREVISION= 6
PORTREVISION= 7
PORTEPOCH= 1
CATEGORIES= math

2
math/octave/Makefile
View File

@ -3,7 +3,7 @@
PORTNAME= octave
PORTVERSION= ${OCTAVE_VERSION}
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= math
MASTER_SITES= GNU

98
math/openblas/Makefile
View File

@ -3,6 +3,7 @@
PORTNAME= openblas
PORTVERSION= 0.3.7
PORTREVISION= 1
DISTVERSIONPREFIX= v
PORTEPOCH= 1
CATEGORIES= math
@ -36,11 +37,11 @@ USE_PERL5= build
OPENBLAS_SVER= 0
TEST_TARGET= tests
BUILDFLAGS= FCOMMON_OPT=-frecursive MAKE_NB_JOBS=-1
PLIST_SUB+= PORTVERSION=${PORTVERSION}
OPTIONS_DEFINE= INTERFACE64 OPENMP
OPTIONS_DEFINE_i386= AVX AVX2 DYNAMIC_ARCH
OPTIONS_DEFINE_amd64= AVX AVX2 DYNAMIC_ARCH
OPTIONS_DEFINE_i386= AVX AVX2 DYNAMIC_ARCH
OPTIONS_DEFINE_amd64= AVX AVX2 DYNAMIC_ARCH
OPTIONS_DEFINE_powerpc64= POWER6
OPTIONS_EXCLUDE_powerpc64= OPENMP
@ -67,46 +68,20 @@ TARGET_CPU_ARCH= PPC970
. endif
.endif
.if defined(TARGET_CPU_ARCH)
BUILDFLAGS+= TARGET=${TARGET_CPU_ARCH}
MAKE_ENV+= TARGET=${TARGET_CPU_ARCH}
.endif
MAXTHREADS?= 64
BUILDFLAGS_THREAD+= NUM_THREADS=${MAXTHREADS} USE_THREAD=1
.if ${ARCH:M*64} == ""
BUILDFLAGS+= BINARY32=1
.else
BUILDFLAGS+= BINARY64=1
.endif
MAXTHREADS?= 64
.if ! ${PORT_OPTIONS:MDYNAMIC_ARCH} && ( ${ARCH} == "amd64" || ${ARCH} == "i386" )
MANUAL_PACKAGE_BUILD= Optimizes for the build machine.
.endif
.if ${PORT_OPTIONS:MDYNAMIC_ARCH}
BUILDFLAGS+= DYNAMIC_ARCH=1
PLIST_SUB+= DYNARCH=""
.else
PLIST_SUB+= DYNARCH="@comment "
.endif
.if ${PORT_OPTIONS:MINTERFACE64}
BUILDFLAGS+= INTERFACE64=1
.endif
.if ! ${PORT_OPTIONS:MAVX}
BUILDFLAGS+= NO_AVX=1
.endif
.if ! ${PORT_OPTIONS:MAVX2}
BUILDFLAGS+= NO_AVX2=1
.endif
.if ${PORT_OPTIONS:MOPENMP}
USES+= compiler:openmp
BUILDFLAGS_THREAD+= USE_OPENMP=1
USES+= compiler:openmp
.else
USES+= compiler:c11
.endif
@ -123,6 +98,35 @@ post-extract:
cd ${DISTDIR}/${DIST_SUBDIR} ; \
${CP} ${LARGE_FILE} ${TIMING_FILE} ${WRKSRC}
post-patch:
@${ECHO} MAKE_NB_JOBS=-1 >> ${WRKSRC}/Makefile.rule
@${ECHO} NUM_THREADS=${MAXTHREADS} >> ${WRKSRC}/Makefile.rule
@${ECHO} USE_THREAD=1 >> ${WRKSRC}/Makefile.rule
.if ! ${PORT_OPTIONS:MAVX}
@${ECHO} NO_AVX=1 >> ${WRKSRC}/Makefile.rule
.endif
.if ! ${PORT_OPTIONS:MAVX2}
@${ECHO} NO_AVX2=1 >> ${WRKSRC}/Makefile.rule
.endif
.if ${PORT_OPTIONS:MDYNAMIC_ARCH}
@${ECHO} DYNAMIC_ARCH=1 >> ${WRKSRC}/Makefile.rule
@${ECHO} DYNAMIC_OLDER=1 >> ${WRKSRC}/Makefile.rule
.endif
.if defined(TARGET_CPU_ARCH)
@${ECHO} TARGET=${TARGET_CPU_ARCH} >> ${WRKSRC}/Makefile.rule
.endif
.if ${PORT_OPTIONS:MINTERFACE64}
@${ECHO} INTERFACE64=1 >> ${WRKSRC}/Makefile.rule
.endif
.if ${PORT_OPTIONS:MOPENMP}
@${ECHO} USE_OPENMP=1 >> ${WRKSRC}/Makefile.rule
.endif
.if ${ARCH:M*64} == ""
@${ECHO} BINARY=32 >> ${WRKSRC}/Makefile.rule
.else
@${ECHO} BINARY=64 >> ${WRKSRC}/Makefile.rule
.endif
post-patch-OPENMP-on:
@${REINPLACE_CMD} -e "s+OPENBLAS_NUM_THREADS+OMP_NUM_THREADS+g" \
${WRKSRC}/test/Makefile \
@ -136,35 +140,7 @@ BENCHMARK_THREADS_FLAG= OPENBLAS_NUM_THREADS=${BENCHMARK_MAXTHREADS}
.endif
benchmark: build
cd ${WRKSRC} ; ${SETENV} ${BUILDFLAGS} NUM_THREADS=${MAXTHREADS} \
USE_THREAD=1 ${MAKE_CMD} ${MAKE_ARGS} hpl
cd ${WRKSRC}/benchmark ; ${SETENV} ${BUILDFLAGS} NUM_THREADS=${MAXTHREADS} \
USE_THREAD=1 ${BENCHMARK_THREADS_FLAG} ${MAKE_CMD} ${MAKE_ARGS}
post-install:
cd ${WRKSRC} && \
${FIND} . -name 'common*.h' -print | ${XARGS} ${BASENAME} | ${XARGS} -I {} ${MV} {} openblas_{}
${MV} ${WRKSRC}/version.h ${WRKSRC}/openblas_version.h
${MV} ${WRKSRC}/param.h ${WRKSRC}/openblas_param.h
${MV} ${WRKSRC}/cpuid.h ${WRKSRC}/openblas_cpuid.h
${MV} ${WRKSRC}/config.h ${WRKSRC}/openblas_config.h
${REINPLACE_CMD} \
-e 's/"common.h"/"openblas_common.h"/' \
-e 's/"version.h"/"openblas_version.h"/' \
-e 's/"param.h"/"openblas_param.h"/' \
-e 's/"cpuid.h"/"openblas_cpuid.h"/' \
-e 's/"config.h"/"openblas_config.h"/' \
-e 's/"common_/"openblas_common_/' \
${WRKSRC}/*.h \
${WRKSRC}/*.c \
${WRKSRC}/interface/*.c
${MKDIR} ${STAGEDIR}${PREFIX}/include/openblas
${INSTALL_DATA} ${WRKSRC}/openblas_*.h ${STAGEDIR}${PREFIX}/include/openblas
${INSTALL_DATA} ${WRKSRC}/cblas.h ${WRKSRC}/config_last.h ${WRKSRC}/l1param.h ${WRKSRC}/l2param.h ${WRKSRC}/symcopy.h \
${STAGEDIR}${PREFIX}/include/openblas
${MV} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}_*-r${PORTVERSION}.a ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.a
${MV} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}_*-r${PORTVERSION}.so ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so.${OPENBLAS_SVER}
${RM} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so
${LN} -sf lib${PORTNAME}.so.${OPENBLAS_SVER} ${STAGEDIR}${PREFIX}/lib/lib${PORTNAME}.so
cd ${WRKSRC} ; ${SETENV} ${MAKE_CMD} ${MAKE_ARGS} hpl
cd ${WRKSRC}/benchmark ; ${SETENV} ${BENCHMARK_THREADS_FLAG} ${MAKE_CMD} ${MAKE_ARGS}
.include <bsd.port.post.mk>

42
math/openblas/pkg-plist
View File

@ -4,49 +4,11 @@ include/lapacke.h
include/lapacke_config.h
include/lapacke_mangling.h
include/lapacke_utils.h
include/openblas/cblas.h
include/openblas/config_last.h
include/openblas/l1param.h
include/openblas/l2param.h
include/openblas/openblas_common.h
include/openblas/openblas_common_alpha.h
include/openblas/openblas_common_arm.h
include/openblas/openblas_common_arm64.h
include/openblas/openblas_common_c.h
include/openblas/openblas_common_d.h
include/openblas/openblas_common_ia64.h
include/openblas/openblas_common_interface.h
include/openblas/openblas_common_lapack.h
include/openblas/openblas_common_level1.h
include/openblas/openblas_common_level2.h
include/openblas/openblas_common_level3.h
include/openblas/openblas_common_linux.h
include/openblas/openblas_common_macro.h
include/openblas/openblas_common_mips.h
include/openblas/openblas_common_mips64.h
include/openblas/openblas_common_param.h
include/openblas/openblas_common_power.h
include/openblas/openblas_common_q.h
include/openblas/openblas_common_reference.h
include/openblas/openblas_common_s.h
include/openblas/openblas_common_sparc.h
include/openblas/openblas_common_stackalloc.h
include/openblas/openblas_common_thread.h
include/openblas/openblas_common_x.h
include/openblas/openblas_common_x86.h
include/openblas/openblas_common_x86_64.h
include/openblas/openblas_common_z.h
include/openblas/openblas_common_zarch.h
include/openblas/openblas_config.h
include/openblas/openblas_cpuid.h
include/openblas/openblas_config_template.h
include/openblas/openblas_param.h
include/openblas/openblas_version.h
include/openblas/symcopy.h
include/openblas_config.h
lib/cmake/openblas/OpenBLASConfig.cmake
lib/cmake/openblas/OpenBLASConfigVersion.cmake
lib/libopenblas.a
lib/libopenblas.so
lib/libopenblas.so.0
lib/libopenblasp-r%%PORTVERSION%%.a
lib/libopenblasp-r%%PORTVERSION%%.so
libdata/pkgconfig/openblas.pc

2
math/openturns/Makefile
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@ -3,7 +3,7 @@
PORTNAME= openturns
DISTVERSIONPREFIX= v
DISTVERSION= 1.14
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

1
math/osi/Makefile
View File

@ -2,6 +2,7 @@
PORTNAME= Osi
DISTVERSION= 0.108.5
PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/
PKGNAMEPREFIX= coin-or-

1
math/primme/Makefile
View File

@ -3,6 +3,7 @@
PORTNAME= primme
DISTVERSIONPREFIX= v
DISTVERSION= 3.0.2
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/py-numpy/Makefile
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@ -3,7 +3,7 @@
PORTNAME= numpy
PORTVERSION= 1.16.5
PORTREVISION= 3
PORTREVISION= 4
PORTEPOCH= 1
CATEGORIES= math python
MASTER_SITES= CHEESESHOP \

2
math/py-pysparse/Makefile
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@ -3,7 +3,7 @@
PORTNAME= pysparse
PORTVERSION= 1.3
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= math python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
math/py-scs/Makefile
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@ -2,7 +2,7 @@
PORTNAME= scs
DISTVERSION= 2.1.1-2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
math/qposases/Makefile
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@ -2,7 +2,7 @@
PORTNAME= qpOASES
DISTVERSION= 3.2.1
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= https://www.coin-or.org/download/source/${PORTNAME}/
PKGNAMEPREFIX= coin-or-

2
math/scilab/Makefile
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@ -3,7 +3,7 @@
PORTNAME= scilab
PORTVERSION= 5.5.2
PORTREVISION= 22
PORTREVISION= 23
CATEGORIES= math cad java
MASTER_SITES= https://www.scilab.org/download/${PORTVERSION}/
DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX}

2
math/scs/Makefile
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@ -2,7 +2,7 @@
PORTNAME= scs
DISTVERSION= 2.1.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/sdpa/Makefile
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@ -3,7 +3,7 @@
PORTNAME= sdpa
PORTVERSION= 7.3.8
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/${PORTNAME} \
DEBIAN/pool/main/m/mumps:mumps

2
math/suitesparse/Makefile
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@ -3,7 +3,7 @@
PORTNAME= suitesparse
DISTVERSION= 5.4.0
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= http://faculty.cse.tamu.edu/davis/SuiteSparse/ \
https://mirror.sobukus.de/files/src/suitesparse/

2
math/sundials/Makefile
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@ -2,7 +2,7 @@
PORTNAME= sundials
DISTVERSION= 3.1.2
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= math
MASTER_SITES= https://computation.llnl.gov/projects/sundials/download/

2
math/superlu/Makefile
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@ -3,7 +3,7 @@
PORTNAME= superlu
PORTVERSION= 5.2.1
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= math
MASTER_SITES= http://crd-legacy.lbl.gov/~xiaoye/SuperLU/ \
http://crd-legacy.lbl.gov/~xiaoye/:doc

2
math/taucs/Makefile
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@ -3,7 +3,7 @@
PORTNAME= taucs
PORTVERSION= 2.2
PORTREVISION= 22
PORTREVISION= 23
CATEGORIES= math
MASTER_SITES= http://www.tau.ac.il/~stoledo/taucs/${PORTVERSION}/ \
LOCAL/bf

2
math/tmv/Makefile
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@ -3,7 +3,7 @@
PORTNAME= tmv
DISTVERSIONPREFIX= v
DISTVERSION= 0.75
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
misc/mxnet/Makefile
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@ -3,7 +3,7 @@
PORTNAME= mxnet
DISTVERSION= 1.6.0
DISTVERSIONSUFFIX= .rc0
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= misc # machine-learning
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/

2
science/PETSc/Makefile
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@ -3,7 +3,7 @@
PORTNAME= PETSc
DISTVERSION= 3.10.2
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science devel
MASTER_SITES= http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
DISTNAME= ${PORTNAME:tl}-${DISTVERSION}

2
science/berkeleygw/Makefile
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@ -2,7 +2,7 @@
PORTNAME= BerkeleyGW
DISTVERSION= 2.0.0
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= https://berkeley.box.com/shared/static/
DISTFILES= wkqu37wu77tll53r8t1soe6ozqja67yy.gz

2
science/chemps2/Makefile
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@ -3,7 +3,7 @@
PORTNAME= CheMPS2
DISTVERSIONPREFIX= v
DISTVERSION= 1.8.9
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

6
science/code_saturne/Makefile
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@ -4,7 +4,7 @@
PORTNAME= code_saturne
PORTVERSION= 6.0.1
DISTVERSIONPREFIX= v
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science parallel
MAINTAINER= thierry@FreeBSD.org
@ -45,8 +45,8 @@ OPTIONS_DEFAULT= BATCH BLAS MPI METIS
OPTIONS_RADIO= METIS
OPTIONS_RADIO_METIS= METIS PARMETIS
BLAS_USES= blaslapack
BLAS_CONFIGURE_ON= --with-blas=yes --with-blas-type=BLAS
BLAS_LIB_DEPENDS= libcblas.so:math/cblas
BLAS_CONFIGURE_ON= --with-blas=yes --with-blas-lib=${LOCALBASE}/lib --with-blas-libs=-lopenblas
BLAS_LIB_DEPENDS= libopenblas.so:math/openblas
BATCH_DESC= Use Torque to submit batches
BATCH_RUN_DEPENDS= pbs-config:sysutils/torque
MPI_LIB_DEPENDS= libmpi.so:net/mpich

1
science/dalton/Makefile
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@ -2,6 +2,7 @@
PORTNAME= dalton
DISTVERSION= 2018.2
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/dlib-cpp/Makefile
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@ -2,7 +2,7 @@
PORTNAME= dlib
DISTVERSION= 19.17
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= science devel math
MASTER_SITES= http://dlib.net/files/
PKGNAMESUFFIX= -cpp

1
science/elmerfem/Makefile
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@ -3,6 +3,7 @@
PORTNAME= elmerfem
PORTVERSION= 8.4
PORTREVISION= 1
DISTVERSIONPREFIX= release-
CATEGORIES= science

1
science/erkale/Makefile
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@ -2,6 +2,7 @@
PORTNAME= erkale
DISTVERSION= g20200110
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/fleur/Makefile
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@ -2,7 +2,7 @@
PORTNAME= fleur
DISTVERSION= 0.27-3 # Release 3 of Version 0.27
PORTREVISION= 7
PORTREVISION= 8
CATEGORIES= science
MASTER_SITES= http://www.flapw.de/pm/uploads/FLEUR/
DISTNAME= fleurMaXR${DISTVERSION:C/.*-//}

2
science/gamess-us/Makefile
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@ -2,7 +2,7 @@
PORTNAME= gamess
DISTVERSION= 20181013
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= science
PKGNAMESUFFIX= -us # "US" fork
DISTNAME= gamess-current

1
science/gromacs/Makefile
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@ -3,6 +3,7 @@
PORTNAME= gromacs
DISTVERSION= 2020
PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/

2
science/harminv/Makefile
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@ -3,7 +3,7 @@
PORTNAME= harminv
PORTVERSION= 1.3.1
PORTREVISION= 18
PORTREVISION= 19
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/harminv/

1
science/hypre/Makefile
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@ -4,6 +4,7 @@
PORTNAME= hypre
DISTVERSIONPREFIX= v
DISTVERSION= 2.18.2
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/iboview/Makefile
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@ -3,7 +3,7 @@
PORTNAME= iboview
PORTVERSION= 20150427
PORTREVISION= 20
PORTREVISION= 21
CATEGORIES= science
MASTER_SITES= http://www.iboview.org/bin/
DISTNAME= ibo-view.20150427

1
science/lammps/Makefile
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@ -2,6 +2,7 @@
PORTNAME= lammps
PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/}
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/latte/Makefile
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@ -3,7 +3,7 @@
PORTNAME= latte
DISTVERSIONPREFIX= v
DISTVERSION= 1.2.1
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

1
science/libcint/Makefile
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@ -3,6 +3,7 @@
PORTNAME= libcint
DISTVERSIONPREFIX= v
DISTVERSION= 3.0.19
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

1
science/mbdyn/Makefile
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@ -3,6 +3,7 @@
PORTNAME= mbdyn
PORTVERSION= 1.7.3
PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/

2
science/mpqc/Makefile
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@ -3,7 +3,7 @@
PORTNAME= mpqc
PORTVERSION= 2.3.1
PORTREVISION= 44
PORTREVISION= 45
CATEGORIES= science parallel
MASTER_SITES= SF

2
science/multiwfn/Makefile
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@ -3,7 +3,7 @@
PORTNAME= multiwfn
DISTVERSIONPREFIX= v
DISTVERSION= 3.4.1-0-14
PORTREVISION= 3
PORTREVISION= 4
DISTVERSIONSUFFIX= -ge873677
CATEGORIES= science

2
science/opensim-core/Makefile
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@ -3,7 +3,7 @@
PORTNAME= OpenSim
DISTVERSION= 4.0-601
DISTVERSIONSUFFIX= -ga2574fcda
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science
PKGNAMESUFFIX= -core

2
science/py-dlib/Makefile
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@ -2,7 +2,7 @@
PORTNAME= dlib
DISTVERSION= 19.17
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= science devel math python
MASTER_SITES= http://dlib.net/files/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
science/py-gpaw/Makefile
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@ -2,7 +2,7 @@
PORTNAME= gpaw
DISTVERSION= 1.5.2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
science/py-phono3py/Makefile
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@ -2,7 +2,7 @@
PORTNAME= phono3py
DISTVERSION= 1.13.3.27
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
science/qmcpack/Makefile
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@ -3,7 +3,7 @@
PORTNAME= qmcpack
DISTVERSIONPREFIX= v
DISTVERSION= 3.8.0
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

1
science/simbody/Makefile
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@ -3,6 +3,7 @@
PORTNAME= simbody
DISTVERSIONPREFIX= Simbody-
DISTVERSION= 3.7
PORTREVISION= 1
CATEGORIES= science biology
PATCH_SITES= https://github.com/${PORTNAME}/${PORTNAME}/commit/