Add p5-Bio-DB-EMBL 1.7.4

Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
EMBL database using the dbfetch script at EBI.

In order to make changes transparent we have host type (currently only ebi) and
location (defaults to ebi) separated out. This allows later additions of more
servers in different geographical locations.

The functionality of this module is inherited from Bio::DB::DBFetch which
implements Bio::DB::WebDBSeqI.

WWW: https://metacpan.org/release/Bio-DB-EMBL
This commit is contained in:
Sunpoet Po-Chuan Hsieh 2019-12-08 16:49:19 +00:00
parent 2715cc2812
commit 876817898e
Notes: svn2git 2021-03-31 03:12:20 +00:00
svn path=/head/; revision=519318
5 changed files with 44 additions and 0 deletions

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@ -86,6 +86,7 @@
SUBDIR += p5-Bio-ASN1-EntrezGene
SUBDIR += p5-Bio-Cluster
SUBDIR += p5-Bio-Coordinate
SUBDIR += p5-Bio-DB-EMBL
SUBDIR += p5-Bio-Das
SUBDIR += p5-Bio-Das-Lite
SUBDIR += p5-Bio-FeatureIO

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@ -0,0 +1,27 @@
# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
# $FreeBSD$
PORTNAME= Bio-DB-EMBL
PORTVERSION= 1.7.4
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
MAINTAINER= sunpoet@FreeBSD.org
COMMENT= Database object interface for EMBL entry retrieval
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${RUN_DEPENDS}
RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl
TEST_DEPENDS= p5-Test-Most>=0:devel/p5-Test-Most \
p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet
USES= perl5
USE_PERL5= configure
NO_ARCH= yes
.include <bsd.port.mk>

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@ -0,0 +1,3 @@
TIMESTAMP = 1575793783
SHA256 (Bio-DB-EMBL-1.7.4.tar.gz) = fce080c4b3db7bcc529fd0cf0d29700d0b86ef8bbe7f77ad87f429a3ae7e1a27
SIZE (Bio-DB-EMBL-1.7.4.tar.gz) = 13927

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@ -0,0 +1,11 @@
Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
EMBL database using the dbfetch script at EBI.
In order to make changes transparent we have host type (currently only ebi) and
location (defaults to ebi) separated out. This allows later additions of more
servers in different geographical locations.
The functionality of this module is inherited from Bio::DB::DBFetch which
implements Bio::DB::WebDBSeqI.
WWW: https://metacpan.org/release/Bio-DB-EMBL

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@ -0,0 +1,2 @@
%%SITE_PERL%%/Bio/DB/EMBL.pm
%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz