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Sunpoet Po-Chuan Hsieh 876817898e Add p5-Bio-DB-EMBL 1.7.4
Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
EMBL database using the dbfetch script at EBI.

In order to make changes transparent we have host type (currently only ebi) and
location (defaults to ebi) separated out. This allows later additions of more
servers in different geographical locations.

The functionality of this module is inherited from Bio::DB::DBFetch which
implements Bio::DB::WebDBSeqI.

WWW: https://metacpan.org/release/Bio-DB-EMBL
2019-12-08 16:49:19 +00:00
accessibility accessibility/speech-dispatcher: use patch to replace static content 2019-12-06 16:53:33 +00:00
arabic
archivers Per section 4.4.3 of the Porters Handbook, REINPLACE_CMD (sed) should not be 2019-12-07 08:30:14 +00:00
astro KDE5 ports: enable WEBENGINE on powerpc64 elfv2 by default 2019-12-04 17:39:07 +00:00
audio audio/bsequencer-lv2: Update 0.4 -> 1.2.0 2019-12-08 16:33:45 +00:00
base Simplify a few things and fix cross-building. 2019-12-03 23:22:23 +00:00
benchmarks - Update to the latest GitHub commit: current version is from 2015 2019-12-07 11:39:35 +00:00
biology Add p5-Bio-DB-EMBL 1.7.4 2019-12-08 16:49:19 +00:00
cad - Update to 3.10.14 2019-12-02 21:48:18 +00:00
chinese chinese/auto-cn-l10n: correct redundant REINPLACE_CMD 2019-12-04 15:51:50 +00:00
comms comms/flrig: fix build on powerpc64 elfv2 2019-12-07 17:52:59 +00:00
converters - Update to 1.2.1 2019-12-03 11:26:34 +00:00
databases Add two missing patches with r519299. 2019-12-08 13:04:48 +00:00
deskutils deskutils/latte-dock: update to 0.9.5 2019-12-08 09:56:41 +00:00
devel devel/blitz: Update 1.0.1 -> 1.0.2 2019-12-08 16:38:51 +00:00
dns Change rubygem ports required by www/gitlab-ce to rails52. 2019-12-07 10:31:38 +00:00
editors - Upgrade to 50.0.3 2019-12-07 14:43:00 +00:00
emulators emulators/yuzu: update to s20191207 2019-12-08 00:46:14 +00:00
finance - Update to 1.6-4 2019-12-07 05:08:12 +00:00
french Update to 1.6.0 2019-11-29 01:44:09 +00:00
ftp Update to v1.3.1 2019-12-05 16:44:08 +00:00
games games/diaspora: fix build on GCC architectures 2019-12-08 15:28:05 +00:00
german Update to 2019.11.17 2019-11-18 18:13:33 +00:00
graphics Unbreak the build on architectures with unsigned chars (arm, powerpc, riscv). 2019-12-08 16:47:43 +00:00
hebrew
hungarian Mark a few ports BROKEN, unfetchable 2019-11-06 12:48:32 +00:00
irc irc/weechat: Switch to Ninja build, fix USES 2019-12-08 14:51:14 +00:00
japanese Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
java java/intellij-ultimate: Update to 2019.3 2019-12-07 11:33:12 +00:00
Keywords
korean Add missing USES={gnome,php,sdl} to the rest 2019-11-08 14:47:00 +00:00
lang Readd v 0.1.22 2019-12-08 16:49:07 +00:00
mail mail/roundcube-contextmenu: update to 3.0 2019-12-05 16:44:38 +00:00
math math/ascent: Update 0.4.0 -> 0.5.0 2019-12-08 16:42:19 +00:00
misc misc/iio-oscilloscope: Update 0.10 -> 0.11 2019-12-08 16:06:18 +00:00
Mk Add new Makefile target "install-missing-packages" to install missing dependencies from packages. 2019-12-08 10:19:38 +00:00
multimedia Update to upstream version 41.0.0 2019-12-08 13:37:38 +00:00
net devel/libfmt: Update to 6.1.1 2019-12-08 06:59:43 +00:00
net-im devel/libfmt: Update to 6.1.1 2019-12-08 06:59:43 +00:00
net-mgmt net-mgmt/collectd5: upgrade 5.9.0 -> 5.10.0 2019-12-08 10:05:44 +00:00
net-p2p net-p2p/monero-cli: Upgrade from 0.15.0.0 to 0.15.0.1 2019-12-06 10:45:35 +00:00
news news/inn: fix typo 2019-12-08 01:08:28 +00:00
polish Update to 20191117 2019-11-18 18:13:38 +00:00
ports-mgmt - Update to 20191018 2019-12-04 17:04:41 +00:00
portuguese Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
print Add ttfautohint 1.8.3 2019-12-08 16:49:13 +00:00
russian Update to 5.2.4 2019-11-12 08:00:51 +00:00
science science/pagmo2: Update 2.10-161 -> 2.11.4 2019-12-08 01:52:29 +00:00
security security/{libscep,p5-Crypt-LibSCEP}: upgrade 0.06 -> 0.08 2019-12-08 11:42:20 +00:00
shells shells/antibody: Unbreak on aarch64 2019-12-05 17:05:13 +00:00
sysutils sysutils/osinfo-db-tools: update to 1.7.0 2019-12-08 11:44:24 +00:00
Templates
textproc textproc/libebml: update to 1.3.10 2019-12-07 18:33:11 +00:00
Tools
ukrainian
vietnamese Add USES=xorg USES=gl, ports categories v 2019-11-07 17:19:51 +00:00
www New Port: www/nginx-vts-exportr 2019-12-08 10:28:13 +00:00
x11 - Fix LICENSE 2019-12-08 09:40:40 +00:00
x11-clocks KDE Applications: update to 19.08.3 2019-11-09 08:13:40 +00:00
x11-drivers Add USES=xorg USES=gl, ports categories x 2019-11-07 18:36:55 +00:00
x11-fm - Update thunar to 1.8.11 2019-11-16 16:42:12 +00:00
x11-fonts x11-fonts/nerd-fonts: really fetch from github nor distcache. 2019-12-06 16:30:51 +00:00
x11-servers Add USES=xorg USES=gl, ports categories x 2019-11-07 18:36:55 +00:00
x11-themes x11-themes/papirus-icon-theme: Update to 20191201 2019-12-06 19:49:38 +00:00
x11-toolkits Add PKGNAMESUFFIX to avoid PKGBASE conflict with lang/v 2019-12-08 16:49:03 +00:00
x11-wm KDE Plasma Desktop -- update to 5.17.4 2019-12-04 17:29:42 +00:00
.arcconfig
.gitattributes
.gitauthors
.gitignore
.gitmessage
CHANGES
CONTRIBUTING.md
COPYRIGHT
GIDs Update to 0.6.2. 2019-11-28 10:56:59 +00:00
LEGAL net/zerotier: update to 1.4.6, note new LICENSE 2019-11-25 13:37:36 +00:00
Makefile Retire the palm category (1999-2019) 2019-11-04 11:57:46 +00:00
MOVED MOVED: Pet MOVEDlint 2019-12-06 15:58:40 +00:00
README
UIDs Update to 0.6.2. 2019-11-28 10:56:59 +00:00
UPDATING mail/nextcloud-mail: Update to 0.20.0 2019-12-04 16:04:09 +00:00

This is the FreeBSD Ports Collection.  For an easy to use
WEB-based interface to it, please see:

	https://www.FreeBSD.org/ports

For general information on the Ports Collection, please see the
FreeBSD Handbook ports section which is available from:

	https://www.FreeBSD.org/doc/en_US.ISO8859-1/books/handbook/ports.html
		for the latest official version
	or:
	The ports(7) manual page (man ports).

These will explain how to use ports and packages.

If you would like to search for a port, you can do so easily by
saying (in /usr/ports):

	make search name="<name>"
	or:
	make search key="<keyword>"

which will generate a list of all ports matching <name> or <keyword>.
make search also supports wildcards, such as:

	make search name="gtk*"

For information about contributing to FreeBSD ports, please see the Porter's
Handbook, available at:

	https://www.FreeBSD.org/doc/en_US.ISO8859-1/books/porters-handbook/

NOTE:  This tree will GROW significantly in size during normal usage!
The distribution tar files can and do accumulate in /usr/ports/distfiles,
and the individual ports will also use up lots of space in their work
subdirectories unless you remember to "make clean" after you're done
building a given port.  /usr/ports/distfiles can also be periodically
cleaned without ill-effect.