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biology/hyphy: Update to version 2.5.8

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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.8
This commit is contained in:
Joseph Mingrone 2020-03-28 12:27:11 +00:00
parent c6a4c59a5c
commit 263987970a
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=529331
3 changed files with 7 additions and 5 deletions
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2
biology/hyphy/Makefile
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@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= hyphy
DISTVERSION= 2.5.7
DISTVERSION= 2.5.8
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org

6
biology/hyphy/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1584664580
SHA256 (veg-hyphy-2.5.7_GH0.tar.gz) = fdcbad1f2f2c7fc83f5f7cec464aedf1114d68b84a34a65b59caeb462b631caf
SIZE (veg-hyphy-2.5.7_GH0.tar.gz) = 6081964
TIMESTAMP = 1585349961
SHA256 (veg-hyphy-2.5.8_GH0.tar.gz) = df528ba5cd86071017a005ae9a7cd76f8d35b7270e62840ae5fc4231092ac9b8
SIZE (veg-hyphy-2.5.8_GH0.tar.gz) = 6093096

4
biology/hyphy/pkg-plist
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@ -1,5 +1,4 @@
bin/hyphy
lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf
lib/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
lib/hyphy/GeneticCodes/Ascidian_mtDNA.cod
lib/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
@ -181,6 +180,7 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL-contrast.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
@ -385,6 +385,7 @@ lib/hyphy/TemplateBatchFiles/libv3/models/codon.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf
lib/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
lib/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
@ -427,6 +428,7 @@ lib/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
lib/hyphy/TemplateBatchFiles/relrateBootstrap.bf
lib/hyphy/TemplateBatchFiles/relratioBootstrap.bf
lib/hyphy/TemplateBatchFiles/selectModelParameters.bf
lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf
lib/hyphy/data/brown.nuc
lib/hyphy/data/integrase_BDA.nex
lib/hyphy/data/p51.aa