Jason W. Bacon 8aad5af0de biology/p5-transdecoder: Update to 5.7.0 ... Numerous small fixes and enhancements since 5.4.0 Changes: https://github.com/TransDecoder/TransDecoder/tags Reported by: portscout		2023-01-30 16:30:54 -06:00
..
abyss	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ad2vcf	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
artemis	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
atac-seq	biology/atac-seq: Update to 0.1.1	2023-01-12 13:00:03 -06:00
augustus	math/suitesparse*: bump PORTREVISION of dependant ports	2023-01-19 17:45:37 +01:00
avida	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
babel	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bamtools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bamutil	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
barrnap	biology/barrnap: Update descr	2022-11-24 19:12:18 -08:00
bbmap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bcftools	biology/bcftools: Update to 1.16	2023-01-05 17:19:22 -06:00
bedtools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bfc	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bio-mocha	biology/bio-mocha: Update to 1.16	2023-01-05 17:21:03 -06:00
bioawk	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
biococoa	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
biolibc	biology/biolibc: Update to 0.2.4	2022-12-11 14:06:23 -06:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.4.1	2022-12-13 18:11:56 -06:00
bioparser	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
biosig	math/suitesparse*: bump PORTREVISION of dependant ports	2023-01-19 17:45:37 +01:00
biosoup	biology/biosoup: Update g20201216 -> 0.10.0-2	2022-10-10 23:10:56 -07:00
biostar-tools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bolt-lmm	*/*: bump libboost*.so libraries consumert after Boost upgrade	2023-01-16 22:32:07 +03:00
bowtie	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bowtie2	biology/bowtie2: Update to 2.5.1	2023-01-21 16:30:48 -06:00
bwa	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
canu	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
cd-hit	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
cdbfasta	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
checkm	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
clustal-omega	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
clustalw	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
cufflinks	*/*: bump libboost*.so libraries consumert after Boost upgrade	2023-01-16 22:32:07 +03:00
cytoscape	biology/cytoscape: Broken on armv6, armv7	2022-12-10 23:41:04 -08:00
ddocent	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
diamond	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
dsr-pdb	*/*: bump libboost*.so libraries consumert after Boost upgrade	2023-01-16 22:32:07 +03:00
edlib	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
emboss	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
erminej	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
exonerate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fasda	biology/fasda: Fast and simple differential analysis	2022-12-12 11:17:22 -06:00
fasta	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fasta3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastahack	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastdnaml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastool	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastp	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastq-trim	biology/fastq-trim: Update to 0.1.2	2022-12-11 15:24:05 -06:00
fastqc	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fasttree	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastx-toolkit	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
figtree	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
flash	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fluctuate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
freebayes	biology/freebayes: Drop redundant tabixpp dep	2023-01-22 10:42:34 -06:00
garlic	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gatk	biology/gatk: Update 4.2.6.1 -> 4.3.0.0	2022-11-26 20:06:47 -08:00
gcta	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gemma	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
generand	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gff2ps	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gffread	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gmap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gperiodic	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
graphlan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
groopm	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
haplohseq	*/*: bump libboost*.so libraries consumert after Boost upgrade	2023-01-16 22:32:07 +03:00
hhsuite	biology/hhsuite: Disable on 32-bit architectures following upstream advice	2022-10-01 11:16:04 -07:00
hisat2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
hmmer	biology/hmmer: Update to 3.3.2	2022-10-11 15:13:01 -05:00
htslib	biology/htslib: Update to 1.16	2023-01-05 17:16:08 -06:00
hyphy	biology/hyphy: Update to upstream tag 2.5.46hf1	2023-01-09 22:05:57 -04:00
igv	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
infernal	biology/infernal: Update to 1.1.4	2022-10-12 11:15:54 +01:00
iolib	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
iqtree	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
jalview	biology/jalview: Update 2.11.1.4 -> 2.11.2.5	2022-10-11 23:58:18 -07:00
jellyfish	biology/jellyfish: Bump PORTREVISION for biology/htslib update	2023-01-05 19:24:44 -06:00
kallisto	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
kmcp	biology/kmcp: Update 0.8.4 → 0.9.1	2023-01-27 22:56:37 -08:00
lamarc	biology/lamarc: Refactor after wxgtk28 removal	2022-12-31 04:54:58 +01:00
libbigwig	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libcombine	biology/libcombine: Update 0.2.19 -> 0.2.20	2022-12-08 03:11:24 -08:00
libgff	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libgtextutils	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libneurosim	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libnuml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libsbml	biology/libsbml: unbreak build after 18c6e18276 (+)	2023-01-18 17:47:24 +03:00
libsedml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
linux-foldingathome	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mafft	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mapm3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
megahit	biology/megahit: Add cmake patch to respect ports build flags	2022-11-24 08:10:13 -06:00
metaeuk	biology/metaeuk: Fix build on systems withour OpenMP enabled	2022-12-10 01:51:02 -08:00
migrate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
minimap2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mmseqs2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
molden	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mothur	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mrbayes	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mummer	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
muscle	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ncbi-blast+	devel/grpc: Update to 1.49.0	2022-10-03 10:14:06 +08:00
ncbi-cxx-toolkit	graphics/proj: Update to 9.1.1	2023-01-18 15:48:50 +01:00
ncbi-entrez-direct	all: Bump PORTVERSION after lang/go{118,119} update	2023-01-14 06:31:17 -05:00
ncbi-toolkit	*/*: Bump PORTREVISION for consumers of libunistring	2022-10-22 11:36:07 +02:00
ncbi-vdb	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ngs-sdk	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-AcePerl	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-ASN1-EntrezGene	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Cluster	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Coordinate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-DB-EMBL	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-DB-NCBIHelper	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Das	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Das-Lite	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-FeatureIO	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-GFF3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Glite	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Graphics	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-MAGETAB	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-NEXUS	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Phylo	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-SCF	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Variation	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-BioPerl	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-BioPerl-Run	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-TrimGalore	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-transdecoder	biology/p5-transdecoder: Update to 5.7.0	2023-01-30 16:30:54 -06:00
paml	biology/paml: Update to 4.10.6	2022-11-12 22:35:29 -04:00
pbbam	biology/pbbam: Bump PORTREVISION for biology/htslib update	2023-01-05 19:25:09 -06:00
pbseqan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
peak-classifier	biology/peak-classifier: Update to 0.1.4-5	2022-12-11 14:09:20 -06:00
pear-merger	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phrap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phred	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phyml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
picard-tools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
plink	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
pooler	biology/pooler: update to 1.86	2022-12-19 08:56:15 +01:00
primer3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
prodigal	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
prodigy-lig	biology/prodigy-lig: Update 1.0.0-3 -> 1.0.1	2023-01-23 00:17:38 -08:00
protomol	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
psi88	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
py-Genesis-PyAPI	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-PySCeS	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-bcbio-gff	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-biom-format	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-biopython	biology/py-biopython: Update to 1.80	2022-12-05 19:45:16 +08:00
py-biosig	biology/py-biosig: New port: Library for reading and writing different biosignal data format	2022-12-30 00:32:02 -08:00
py-bx-python	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-crossmap	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-cutadapt	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-deeptools	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-deeptoolsintervals	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-dna-features-viewer	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-dnaio	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-ete3	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-gffutils	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-goatools	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-gtfparse	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-hits	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-libnuml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
py-libsedml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
py-loompy	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-macs2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
py-mrcfile	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-multiqc	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-ont-fast5-api	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
py-orange3-bioinformatics	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-orange3-single-cell	Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"	2022-12-06 12:12:04 +01:00
py-pandas-charm	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-py2bit	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pybigwig	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pyfaidx	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pyrodigal	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pysam	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-python-libsbml	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pywgsim	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-resdk	biology/py-resdk: Update 15.0.0 → 16.0.0	2023-01-27 22:56:38 -08:00
py-scikit-bio	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-valerius	biology/py-valerius: New port: Python bioinformatics tools	2022-10-03 21:06:22 -07:00
py-xenaPython	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
pyfasta	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
python-nexus	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
rainbow	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
rampler	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
readseq	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
recombine	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
rna-seq	biology/rna-seq: Update to 0.1.1	2023-01-12 13:02:14 -06:00
ruby-bio	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-executables	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-old-biofetch-emulator	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-shell	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
sam2pairwise	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
samtools	biology/samtools: Update to 1.16.1	2023-01-05 17:17:34 -06:00
scrm	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seaview	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan-apps	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan1	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqio	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqkit	all: Bump PORTVERSION after lang/go{118,119} update	2023-01-14 06:31:17 -05:00
seqtk	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
sigviewer	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
sim4	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
slclust	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
smithwaterman	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
snpeff	biology/snpeff: Update to 5.1	2022-12-19 12:50:00 -06:00
spoa	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
sra-tools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
stacks	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
star	biology/star: Bump PORTREVISION for biology/htslib update	2023-01-05 19:27:16 -06:00
stringtie	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
subread	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
tRNAscan-SE	biology/tRNAscan-SE: Update to 2.0.11	2022-10-12 12:45:24 +01:00
tabixpp	biology/tabixpp: Deprecate	2023-01-22 11:01:57 -06:00
taxonkit	all: Bump PORTVERSION after lang/go{118,119} update	2023-01-14 06:31:17 -05:00
treekin	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
treepuzzle	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
trimadap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
trimmomatic	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ucsc-userapps	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ugene	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
unikmer	all: Bump PORTVERSION after lang/go{118,119} update	2023-01-14 06:31:17 -05:00
vcf-split	biology/vcf-split: Update to 0.1.5-4	2022-12-11 14:11:33 -06:00
vcf2hap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
vcflib	biology/vcflib: Update to 1.0.6	2023-01-30 16:05:19 -06:00
vcftools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
velvet	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
viennarna	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
vsearch	biology/vsearch: Update to 2.22.1	2022-09-21 11:24:14 -05:00
vt	biology/vt: Bump PORTREVISION for biology/htslib update	2023-01-05 19:19:19 -06:00
wfa2-lib	biology/wfa2-lib: Exact gap-affine algorithm using homology	2023-01-30 13:09:02 -06:00
wise	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
Makefile	biology/wfa2-lib: Exact gap-affine algorithm using homology	2023-01-30 13:09:02 -06:00