cpet
/
freebsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

biology/fasda: Fast and simple differential analysis 

FASDA aims to provide a fast and simple differential analysis tool
that just works and does not require any knowledge beyond basic Unix
command-line skills. The code is written entirely in C to maximize
efficiency and portability, and to provide a simple command-line user
interface.
This commit is contained in:
Jason W. Bacon 2022-12-12 11:17:02 -06:00
parent 09dd942a33
commit 455ea913be
5 changed files with 44 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
biology/Makefile
View File

@ -41,6 +41,7 @@
SUBDIR += emboss
SUBDIR += erminej
SUBDIR += exonerate
SUBDIR += fasda
SUBDIR += fasta
SUBDIR += fasta3
SUBDIR += fastahack

25
biology/fasda/Makefile Normal file
View File

@ -0,0 +1,25 @@
PORTNAME= fasda
DISTVERSION= 0.1.2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
COMMENT= Fast and simple differential analysis
WWW= https://github.com/auerlab/fasda
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc
USES= localbase
USE_GITHUB= yes
GH_ACCOUNT= auerlab
MAKE_ENV= VERSION=${PORTVERSION}
INSTALL_TARGET= install-strip
pre-build:
cd ${WRKSRC} && make depend LOCALBASE=${LOCALBASE}
.include <bsd.port.mk>

3
biology/fasda/distinfo Normal file
View File

@ -0,0 +1,3 @@
TIMESTAMP = 1670865129
SHA256 (auerlab-fasda-0.1.2_GH0.tar.gz) = ea6003795b462286d4b7ea11924f424cdea418a345ceeccd1a04d679edf2374e
SIZE (auerlab-fasda-0.1.2_GH0.tar.gz) = 57295

5
biology/fasda/pkg-descr Normal file
View File

@ -0,0 +1,5 @@
FASDA aims to provide a fast and simple differential analysis tool
that just works and does not require any knowledge beyond basic Unix
command-line skills. The code is written entirely in C to maximize
efficiency and portability, and to provide a simple command-line user
interface.

10
biology/fasda/pkg-plist Normal file
View File

@ -0,0 +1,10 @@
bin/fasda
libexec/fasda/abundance
libexec/fasda/fold-change
libexec/fasda/normalize
libexec/fasda/pval-sim
man/man1/fasda-abundance.1.gz
man/man1/fasda-fold-change.1.gz
man/man1/fasda-normalize.1.gz
man/man1/fasda-pval-sim.1.gz
man/man1/fasda.1.gz