diff --git a/biology/Makefile b/biology/Makefile index 0622b83369d4..b544cbf16e59 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -41,6 +41,7 @@ SUBDIR += emboss SUBDIR += erminej SUBDIR += exonerate + SUBDIR += fasda SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastahack diff --git a/biology/fasda/Makefile b/biology/fasda/Makefile new file mode 100644 index 000000000000..eeca4cc01c9f --- /dev/null +++ b/biology/fasda/Makefile @@ -0,0 +1,25 @@ +PORTNAME= fasda +DISTVERSION= 0.1.2 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Fast and simple differential analysis +WWW= https://github.com/auerlab/fasda + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc + +USES= localbase +USE_GITHUB= yes + +GH_ACCOUNT= auerlab + +MAKE_ENV= VERSION=${PORTVERSION} +INSTALL_TARGET= install-strip + +pre-build: + cd ${WRKSRC} && make depend LOCALBASE=${LOCALBASE} + +.include diff --git a/biology/fasda/distinfo b/biology/fasda/distinfo new file mode 100644 index 000000000000..c0cdeca0ea7c --- /dev/null +++ b/biology/fasda/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1670865129 +SHA256 (auerlab-fasda-0.1.2_GH0.tar.gz) = ea6003795b462286d4b7ea11924f424cdea418a345ceeccd1a04d679edf2374e +SIZE (auerlab-fasda-0.1.2_GH0.tar.gz) = 57295 diff --git a/biology/fasda/pkg-descr b/biology/fasda/pkg-descr new file mode 100644 index 000000000000..7a5c92fa13d8 --- /dev/null +++ b/biology/fasda/pkg-descr @@ -0,0 +1,5 @@ +FASDA aims to provide a fast and simple differential analysis tool +that just works and does not require any knowledge beyond basic Unix +command-line skills. The code is written entirely in C to maximize +efficiency and portability, and to provide a simple command-line user +interface. diff --git a/biology/fasda/pkg-plist b/biology/fasda/pkg-plist new file mode 100644 index 000000000000..939aed76df22 --- /dev/null +++ b/biology/fasda/pkg-plist @@ -0,0 +1,10 @@ +bin/fasda +libexec/fasda/abundance +libexec/fasda/fold-change +libexec/fasda/normalize +libexec/fasda/pval-sim +man/man1/fasda-abundance.1.gz +man/man1/fasda-fold-change.1.gz +man/man1/fasda-normalize.1.gz +man/man1/fasda-pval-sim.1.gz +man/man1/fasda.1.gz