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biology/bio-mocha: Update to 1.16

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New release to sync with bcftools

Changes: https://github.com/freeseek/mocha/commits/master
This commit is contained in:
Jason W. Bacon 2023-01-05 17:21:03 -06:00
parent adfc9433b0
commit 09c70c7488
3 changed files with 9 additions and 13 deletions
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10
biology/bio-mocha/Makefile
View File

@ -1,9 +1,8 @@
PORTNAME= bio-mocha
DISTVERSION= 1.14
PORTREVISION= 1
DISTVERSION= 1.16
CATEGORIES= biology
MASTER_SITES= https://software.broadinstitute.org/software/mocha/
DISTFILES+= ${PORTNAME}_${DISTVERSION}-20220112.tar.gz
DISTFILES+= ${PORTNAME}_${DISTVERSION}-20221221.tar.gz
MAINTAINER= jwb@FreeBSD.org
COMMENT= Bcftools plugin for mosaic chromosomal alteration analysis
@ -21,7 +20,7 @@ USE_PERL5= test
GH_ACCOUNT= samtools
GH_PROJECT= bcftools
GH_TAGNAME= 1.15
GH_TAGNAME= 1.16
GNU_CONFIGURE= yes
SHEBANG_FILES= misc/* test/test.pl
@ -34,6 +33,7 @@ pre-configure:
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \
${WRKSRC}/configure.ac
# One .so for each .c in the mocha distfile
do-install:
${MKDIR} ${STAGEDIR}${PREFIX}/libexec/bcftools
${INSTALL_PROGRAM} ${WRKSRC}/plugins/extendFMT.so \
@ -42,8 +42,6 @@ do-install:
${STAGEDIR}${PREFIX}/libexec/bcftools
${INSTALL_PROGRAM} ${WRKSRC}/plugins/mochatools.so \
${STAGEDIR}${PREFIX}/libexec/bcftools
${INSTALL_PROGRAM} ${WRKSRC}/plugins/score.so \
${STAGEDIR}${PREFIX}/libexec/bcftools
${INSTALL_PROGRAM} ${WRKSRC}/plugins/trio-phase.so \
${STAGEDIR}${PREFIX}/libexec/bcftools
(cd ${WRKSRC}/MoCha && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR})

10
biology/bio-mocha/distinfo
View File

@ -1,5 +1,5 @@
TIMESTAMP = 1645832006
SHA256 (bio-mocha_1.14-20220112.tar.gz) = 189a522418f12cbb04e6c5ccae130dbae1682907808f4cb594af4ff386651068
SIZE (bio-mocha_1.14-20220112.tar.gz) = 75910
SHA256 (samtools-bcftools-1.14-1.15_GH0.tar.gz) = 6b263270c62b156d2604150ca7e64b06a80282e049759b2668de24cbce1b1946
SIZE (samtools-bcftools-1.14-1.15_GH0.tar.gz) = 3347901
TIMESTAMP = 1672095342
SHA256 (bio-mocha_1.16-20221221.tar.gz) = 576cbdda53760f353fc8fd989751716b1d4f8c5e1921f838c263476282cced86
SIZE (bio-mocha_1.16-20221221.tar.gz) = 68625
SHA256 (samtools-bcftools-1.16_GH0.tar.gz) = c44c85a04e058e1f1eceeb712106031100bbd700b8ff3f623f7ff872469a4ba3
SIZE (samtools-bcftools-1.16_GH0.tar.gz) = 3432435

2
biology/bio-mocha/pkg-plist
View File

@ -1,9 +1,7 @@
libexec/bcftools/extendFMT.so
libexec/bcftools/mocha.so
libexec/bcftools/mochatools.so
libexec/bcftools/score.so
libexec/bcftools/trio-phase.so
%%DATADIR%%/assoc_plot.R
%%DATADIR%%/mocha_plot.R
%%DATADIR%%/pileup_plot.R
%%DATADIR%%/summary_plot.R