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biology/megahit: Add cmake patch to respect ports build flags 

Removes agressive optimizations hard-coded upstream
This commit is contained in:
Jason W. Bacon 2022-11-24 08:10:13 -06:00
parent bbdc4e71a8
commit 4b98707562
2 changed files with 18 additions and 0 deletions
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1
biology/megahit/Makefile
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@ -1,6 +1,7 @@
PORTNAME= megahit
DISTVERSIONPREFIX= v
DISTVERSION= 1.2.9
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

17
biology/megahit/files/patch-CMakeLists.txt Normal file
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@ -0,0 +1,17 @@
--- CMakeLists.txt.orig 2019-10-15 02:51:03 UTC
+++ CMakeLists.txt
@@ -42,13 +42,12 @@ find_package(OpenMP REQUIRED)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DXXH_INLINE_ALL -ftemplate-depth=3000")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wno-unused-function")
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprefetch-loop-arrays -funroll-loops")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XROOT__='\"${CMAKE_SOURCE_DIR}/src\"'")
#set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XFILE__='\"$(subst ${CMAKE_SOURCE_DIR}/,,$(abspath $<))\"'")
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${ZLIB_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
-set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
+set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG")
set(CMAKE_CXX_FLAGS_DEBUG "-g -ggdb -O1 -D_LIBCPP_DEBUG -D_GLIBCXX_DEBUG")
if (COVERAGE)