Commit Graph

116133 Commits

Author SHA1 Message Date
Ricardo Wurmus
d478ba2bfb
gnu: r-a4: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.0.

Change-Id: I23de20743d631b3ef3b18707d1c3c1cae67108be
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d69276f7e2
gnu: r-a4base: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.50.0.

Change-Id: I5c2ecfe6e888af18fced6571461b4278a1e188fe
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c6ad1d6186
gnu: r-a4reporting: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.50.0.

Change-Id: Ifb88020fcd8812937e1d4cf2d63f7e2141285c5a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c5a7e436a4
gnu: r-a4preproc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.50.0.

Change-Id: I2b73b3e793131c8d07258bb5f3c0e1304f8b788f
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b89491fcfb
gnu: r-a4classif: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.50.0.

Change-Id: Ib9624648a85cd945eeb4de4f78b1d3c214b3efc4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
17290efded
gnu: r-a4core: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.50.0.

Change-Id: I94addc286eca817db8220eaa83b69742c89f0b25
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7e82848893
gnu: r-annaffy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.74.0.

Change-Id: Ib9e106212783df75fbc03eea51d1c768720f0340
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
97a6b7b971
gnu: r-mlinterfaces: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.82.0.

Change-Id: I1c2812f02206e6026ca4b133f46bb45e45c5d827
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c7d59ff365
gnu: r-clusterexperiment: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.22.0.

Change-Id: I79d2df6fb405ec2870363fd9f63d6d72a3c17b5d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b3f89195e9
gnu: r-gosemsim: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I039ed379e9fa3870bd40a68dbfd6446ca35dafc0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
aa61c81823
gnu: r-heatplus: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.10.0.

Change-Id: I753528f67b5b7e3640a6e59caac755fcd755b5c5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c3d0f015cf
gnu: r-varianttools: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.44.0.

Change-Id: Ib9dc77f1ba4962d9cbb8cad7ebb8026d8e124ffa
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
db11b1bbe0
gnu: r-tradeseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.16.0.

Change-Id: I65377ca43aa3075f7ce401494f1a335b3302306d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5c7985b3b7
gnu: r-ioniser: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.26.0.

Change-Id: I19866002eb8259be80d4f3541fd37020af802f39
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f1c930495b
gnu: r-linnorm: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.26.0.

Change-Id: Ie39f7252178e41bcd103ea8a6c857992eeed7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
038df629a9
gnu: r-lumi: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.54.0.

Change-Id: I74cb1e60a1ba2e9c62b412eec51b71c9b19aa8c7
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e55a61949e
gnu: r-lefser: Update to 1.11.5.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.11.5.

Change-Id: I30883461fef45b2e535175c8534276372e1ef9e4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e6f93e58c9
gnu: r-methylumi: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.48.0.

Change-Id: Ie17336e7bbfe5b9c74beb3887596d2993adbfb4c
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9d69d64b46
gnu: r-siggenes: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.76.0.

Change-Id: I89ebcf7df2771f8ab19bd74d93ba15b72e1a70a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
54a13eff99
gnu: r-illuminaio: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.44.0.

Change-Id: I8da181164ac8e9c98ecc892a7d1fe878cdced4f0
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
cb94125b4c
gnu: r-geoquery: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.70.0.

Change-Id: I9d58b9ed1ad004177a354c7c688ec431368373f8
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dffab6110f
gnu: r-scone: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.26.0.

Change-Id: Iae18ed324d7925e647a664e1547fa0eeaedab6a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
61a2dc87d8
gnu: r-scdd: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.26.0.

Change-Id: I631b260c9a8069fc88140c2a0c9f700f1f321a1a
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
005c3a7ec9
gnu: r-noiseq: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.46.0.

Change-Id: Ie5e5043de7def381411ae1637ebc224f82818eee
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
444871c0f2
gnu: r-sangerseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.38.0.

Change-Id: I53de38940e7ce55f35de24e2f9b5dbf83fcc4f90
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1b63a91e57
gnu: r-monocle: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.0.

Change-Id: Ib0a52eae3545712f3b96e42addf2d9c647eb29f9
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c0ea127d3f
gnu: r-dnacopy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.76.0.

Change-Id: Iba9ff03065138d1fbd295b28d91c06f5596e2048
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
819eb5ca24
gnu: r-chipexoqual: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.26.0.

Change-Id: I1246ce25e9da6aed07d52683e0f8bec677c6a41e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
02ddd7963b
gnu: r-destiny: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.16.0.

Change-Id: I3c22657e57062e00b135e94c764db7f5fbce4a41
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dd6e945cb4
gnu: r-biocsingular: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.18.0.

Change-Id: If1228bfbe2b4a8bd84de6c645356ea35ed632262
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1672a49c4e
gnu: r-metapod: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.0.

Change-Id: I6ae84bb0ab8e68833206b214046a0144f60ae3cb
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
8aeaa84e2a
gnu: r-ggtree: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.0.

Change-Id: Iec5a7eb16425f5c3dbe2d457a71e70c74eb1b159
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
74253229f1
gnu: r-treesummarizedexperiment: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.10.0.

Change-Id: I287f495062c808354edef562d6844d8bb43cfaef
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a7cd80eaf1
gnu: r-treeio: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.26.0.
[propagated-inputs]: Remove r-cli.

Change-Id: I7776d679c5af2e622451204ea586c297d4287389
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
b8daed53af
gnu: r-scaledmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.10.0.

Change-Id: I50c8d29395648059e815c2e9ca2d3a07d17d2aba
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
69bd0f8752
gnu: r-biocneighbors: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.0.

Change-Id: I0e0dd9c4b2d1a4077176614814ef40a3f8c26e30
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f9b3ee2f5f
gnu: r-ruvseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.36.0.

Change-Id: Iadb6c4c38b63a986bb845a482d00f8444b47b6ef
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
9ac392fc93
gnu: r-dnabarcodes: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.32.0.

Change-Id: I7b454a6429b4e7677c300607c794180364d61bb2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
642b3c3e27
gnu: r-inspect: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.31.0.

Change-Id: I05f8e69565de977045a28a6045e1dfe131ef4b09
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
81d0dedf9a
gnu: r-plyranges: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.22.0.

Change-Id: Idb42fef9913b8a1b6600a544928f39ec4b7b16fd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
7aee11f63e
gnu: r-plgem: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.74.0.

Change-Id: I11d5554e5b7833540bcbe327d73240844e816573
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a5eefabd87
gnu: r-rots: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.30.0.

Change-Id: Ia13e99ece1a38eac6a5e370fa18da0ca93e4c962
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e0031de95b
gnu: r-glmgampoi: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.0.

Change-Id: Iaa42254b9765e0942e045f19c15b0b9c04936235
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3e8ae47f0d
gnu: r-glimma: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.12.0.

Change-Id: I075f2b5990724ab8e2e15e88b6ed5acd75a76e80
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
1a27f050be
gnu: r-goseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.54.0.

Change-Id: I42576c75b508d8a31f26042d148065896b65a6f2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
256a5afa3f
gnu: r-ctc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.76.0.

Change-Id: I71627e23e977d69582ac593e35f7306491e04f92
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
4dd7a424bf
gnu: r-genomicinteractions: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.36.0.

Change-Id: I285ad15b9019c128b78bf0f42158f1275b0e3ee0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3d30484b1c
gnu: r-interactionset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.30.0.

Change-Id: I03fd7532d9f32550f50a31c42f32ac2f23dcf12f
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89937f497b
gnu: r-riboseqr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.36.0.

Change-Id: I2a1c843c0174fe058373d80e7a5fc1ecb301d900
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a44c944971
gnu: r-riboprofiling: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.32.0.

Change-Id: I226116cdc9408f294d4baca51b341e97a6a99e84
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
c7f6a7e802
gnu: r-chipcomp: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.32.0.

Change-Id: I2229de3fc55e54de3a2157e7210ae2981fe0e5f0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89f04f09de
gnu: r-bayseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.0.

Change-Id: I45768d7f3f6197834df60816697c425166ba49ac
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
11b594314a
gnu: r-qdnaseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.38.0.

Change-Id: I057ba767886780632acb14af13402ce00c1775cd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
af7177b379
gnu: r-cghbase: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.62.0.

Change-Id: Ib7b8ca1ee0c5ffe5831f92b4b26507e53da5a3a4
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbd1bdf433
gnu: r-marray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.80.0.

Change-Id: I90a32ab6abf3dac1335822e87aa1b0d123ee3f6b
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
56b23251f2
gnu: r-matrixgenerics: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.14.0.

Change-Id: I1160b591dd0d35a3eaeafb4601ee446aa7eb1308
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
88a4c1ef40
gnu: r-chippeakanno: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.0.

Change-Id: Ic006e5393f6b058daf5b27eb2682dc85c50557f8
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
995fd0fb69
gnu: r-pepsnmr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.20.0.

Change-Id: Ibe357d5e6d70209d0d9efb8828133d07606bf3ca
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e42bd79949
gnu: r-ggtreeextra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.12.0.

Change-Id: Ia904f7aef5cbb322bb22b440356f341dcdc7f29a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e466895bcb
gnu: r-graph: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.80.0.

Change-Id: I1a81002cebc1a57cfcba4f99ce26ead8fa2bccf5
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
413ebda52e
gnu: r-multibac: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.12.0.

Change-Id: I4c151b28ffb076846d98156fcdc15a49de34c6e3
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e648d5ab5a
gnu: r-mbkmeans: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.18.0.

Change-Id: Ia8808189503731978f7a6bc1e38e08b2517cbb77
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbf6c8c353
gnu: r-mbecs: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.6.0.
[propagated-inputs]: Remove r-markdown.

Change-Id: I13cb50d3c4dba5eb9f923117b1537d77bce9cc16
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f76b1ecf16
gnu: r-diffbind: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.12.0.

Change-Id: Ib2ca5f8fc3e6d360ac2907ee8a35b7e0ab34251a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
41219277e1
gnu: r-greylistchip: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.34.0.

Change-Id: I9f10a21502160eceb32cbc65c3d98c462062d4a7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
41a5c3f69a
gnu: r-apeglm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.24.0.

Change-Id: Iefd5a26f065763ad3bd7d9f73f4407f65a502888
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
79416c905f
gnu: r-apcomplex: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.68.0.

Change-Id: I48bd988a0977d873c59eb80bae2d09d349579cf4
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
9b9726239a
gnu: r-qvalue: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.34.0.

Change-Id: Ibc6f25bf2dcee3d98845fffd456ea923f853fd2a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
721c52eca7
gnu: r-quantsmooth: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.68.0.

Change-Id: I955f492df4f890f4ba6edb046487818e0d7e49d5
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
1f012cc06b
gnu: r-qfeatures: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.12.0.

Change-Id: I8bde97f0af1defc7e476f0d015bcc091f1efbecc
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
ec76b47df3
gnu: r-oligo: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.66.0.

Change-Id: Ia6630f2cd201f51fba03c6c6bea896169f38382a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
2b07d57f02
gnu: r-oligoclasses: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.64.0.

Change-Id: I660731bdd916015aa1bfb232de16ed501241f0d7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
2b9d304070
gnu: r-geneplotter: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.80.0.
[native-inputs]: Add r-knitr.

Change-Id: I77172aca93197a61a72898347532c998c58c802a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
41340588c8
gnu: r-zellkonverter: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.0.

Change-Id: Iccc4df8e474867f3318c07d1db1c645ef61816b3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c994a043c5
gnu: r-zlibbioc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.0.

Change-Id: I1f2b8d76ff55e094c184ff964600a7fb6d5b0df7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
299fd237c3
gnu: r-xvector: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.42.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: If2e4d2d2fe9c0f5efe26761a53b17c7d248aa4f6
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e6a4b0975
gnu: r-xmapbridge: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.60.0.

Change-Id: Id2c463f2b6a6a0d9554e6454ed2ed8cb21037fb3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e41fdf824
gnu: r-xina: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.20.0.

Change-Id: I9160afa32304721708ed37549c508b127b9b6a13
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
505e9ca855
gnu: r-vsn: Update to 3.70.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.70.0.

Change-Id: Ie8fdb7098eac529621139e22ffe57f6577fa0786
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
a497dbaa05
gnu: r-rgreat: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.4.0.

Change-Id: Iae44d5a6304db5fcc2590dc30b44cec74a5d89a1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
34c65d6f66
gnu: r-mixomics: Update to 6.26.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.26.0.

Change-Id: Id18c555d56cace915eaaef2a88107cfd4865f846
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
44d9185cfb
gnu: r-motifstack: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.46.0.
[arguments]: Simplify.

Change-Id: I1def6688307ae3cda991ab1349b6797d36c0e942
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
1eb852ff06
gnu: r-cghcall: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.64.0.

Change-Id: Ia1280ca4acbd79f1ab0ee3e902d6aec3d5b1c682
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
246eac46a8
gnu: r-multtest: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.58.0.

Change-Id: Ibfc1631dcbc9d0bfb2b89b0f92c34132dbc8f77f
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
01365740ea
gnu: r-variantannotation: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: If1ef81366022c829b2510435412bd16586401ae3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
52922eac72
gnu: r-tximport: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.30.0.

Change-Id: Ica833c44870a941e780a10e8f72ba6bb80d51c87
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
b341a01aea
gnu: r-topgo: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.54.0.

Change-Id: Ie001a348300c3ba353e51e6ae35619f6f20608b9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
0b23c3e384
gnu: r-systempiper: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.8.0.

Change-Id: I6efc8605f7b6d19090ef7f538a455c8155783a8d
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
972c874418
gnu: r-sva: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.50.0.

Change-Id: I98ed4d820507efde8901413da1b9edd2df026aa9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c8df5d8f95
gnu: r-survcomp: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.52.0.

Change-Id: I4a655fc134a6300d0783682be17b9a9b17ea073b
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c123daea71
gnu: r-summarizedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.32.0.

Change-Id: Ifa23d01efcdb3b76858715b8e3919a9ceb56a9c1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
3527647b1e
gnu: r-structuralvariantannotation: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.18.0.

Change-Id: Iee4a06a6c0f22ff0b88a583210968a6a752ff2df
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
05062b3a92
gnu: r-stringdb: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.0.

Change-Id: If98b068a6f09036fa4cadbba3569ac24d242d43c
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
8ea882bb48
gnu: r-stager: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.24.0.

Change-Id: I94dfc44a5437e7bcd4c8b6e258ef62cf7ce2515a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
a78f026f27
gnu: r-spectra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.12.0.
[propagated-inputs]: Add r-metabocoreutils.

Change-Id: I6dcde0647e06d2a051b809c2b9e7cb659ce8733a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e36fcc1e6
gnu: r-slingshot: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.10.0.

Change-Id: I827a2ba68caa4a930c29858dcd2a3840449d1c91
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
894a959520
gnu: r-scds: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.18.0.

Change-Id: I6388da9169fd6e93759579b7e378d9037a2fa2c8
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
d970fa6a92
gnu: r-trajectoryutils: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.0.

Change-Id: I55d3dd66077721eba7b5de5c6f4d8e8dce18243c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
eafe0f33e5
gnu: r-transcriptr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.30.0.

Change-Id: I63bdde62a0afe545c5538b8dc8c84c5b220d659b
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
3ccfda4799
gnu: r-trackviewer: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.0.

Change-Id: I7e13ad40fef06848d4002875c6640406f0e2c8cd
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
4a0bfc3629
gnu: r-tkwidgets: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.80.0.

Change-Id: I3164946bdf1665872b5d96acdaa0b53103bb9440
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
3302942017
gnu: r-tcgautils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.0.

Change-Id: I032c2f7fe6dcd40ade4ed736052e1caad79610e6
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
a6acba4a2d
gnu: r-singscore: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.22.0.

Change-Id: Iad1bd17ce29ecb3118a4998ab53c3deebbe3354d
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
f2d4fb112b
gnu: r-simplifyenrichment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.12.0.

Change-Id: I3ad0ec6e0e990048d1847e5915d9a63b7efc1db4
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
fecb7da1db
gnu: r-shortread: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.60.0.

Change-Id: I130c2f6de4a31c639da2cbddc5d3dd9ef35e3dfb
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
19cc337424
gnu: r-shinymethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.38.0.

Change-Id: I84bf96c91ec31578af9522ccd69693c91d8ac72f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0c949e4684
gnu: r-sesame: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.20.0.

Change-Id: I9ab2fb2cf0a8e65308820b0e93ed6a9c74fd11e5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
8cc5dee008
gnu: r-seqpattern: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.34.0.

Change-Id: Iaca71f59f8399e2fe27ab545b128dbc16097ac72
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
08fcb9423d
gnu: r-seqlogo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.68.0.

Change-Id: Ie71132c07d393633dfc20b2dd43f29621627a615
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
61e1d2efca
gnu: r-seqarray: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.0.

Change-Id: I0efc86ef3f9c0a798ee7cb4434092bea8aa143c5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
5fd85a62e0
gnu: r-scry: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.14.0.

Change-Id: I3138f53e6133f96ecd1efb0ccbc002a53d04b6ab
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
f5e93e8bed
gnu: r-scmap: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.24.0.

Change-Id: I894d2be7b665d64a3278027b93d36910dcc59114
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bb24565a9f
gnu: r-scdblfinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.16.0.

Change-Id: I9978ed4ba4de89ac1a97a4606498eb0bffe4b47c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
96c6e377e6
gnu: r-scannotatr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.8.0.

Change-Id: Ic38511c26633c146aeab43e51420f8cb66d81557
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bf3e9b2287
gnu: r-saturn: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.10.0.

Change-Id: I2d79ca29c9fe303fef07d046fab802932f62ef6c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0f43f41994
gnu: r-rtracklayer: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.62.0.

Change-Id: Icc6a2074292ad9426cb9eb2a50c31b307a724202
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
d08d8fa8a7
gnu: r-rtcgatoolbox: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.32.1.
[propagated-inputs]: Remove r-rcircos.

Change-Id: I1676a7c25e97fa990e855c2d26ecd268b08c8d94
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
2531eac414
gnu: r-rtcga: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.32.0.

Change-Id: I34d49096aee9329730b009209d60471f0b97ce1a
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
1e454c32d7
gnu: r-rsamtools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.18.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: I5276250da7f390358cb62e3934aedf61b4a36d67
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
68bdc0a860
gnu: r-rhdf5filters: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.0.
[native-inputs]: Remove r-biocstyle and r-rmarkdown.

Change-Id: I14e7f0e2c5986c35b9c6ca36dcb3f4127cf348aa
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0e159537dd
gnu: r-rhdf5: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I6423f6b8a92b2053039c2af7f52cbfe047d9f75f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
31d236ad8e
gnu: r-regioner: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.34.0.

Change-Id: I1b8b0d031065a2462d9a812a2ceccf58bf31ff37
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
45b4cdb52e
gnu: r-rbgl: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
42504ecfc8
gnu: r-piano: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
409d6d340d
gnu: r-pcamethods: Update to 1.94.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.94.0.

Change-Id: I67ae7bd85bf7353b038f85842b930337878ea313
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
81172ff685
gnu: r-pcaexplorer: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.28.0.

Change-Id: If0d0369c364c5c665a9cdfe71fb6ce7c4b466b40
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fab197151b
gnu: r-oscope: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.32.0.

Change-Id: Ie2f593d31f51d6fd4954d6eaa633a60e02f8cbee
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d02feac2f1
gnu: r-organismdbi: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.44.0.

Change-Id: I8c018e323daab03e758e8690b31a75c06ae7d748
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
41f7fc3ef5
gnu: r-organism-dplyr: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.30.1.

Change-Id: Ib8c833cd10fa5cc845c954b97a587279cb29127f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
23379de4c9
gnu: r-mzr: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.36.0.

Change-Id: I72f45ac3dbfea48e1327ab6bf87d5ee3eebd5b3d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
376c30b09f
gnu: r-mzid: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.40.0.

Change-Id: Ie85887d844236cc8217f7ccabec284fc4040d3f7
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
24a57583ae
gnu: r-msnid: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.36.0.

Change-Id: I2461051259efcfa92694569689a374a60224e07c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
31291d7aa1
gnu: r-msnbase: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.0.

Change-Id: If193d2756124c63fb308c62c4803378641b5a5d1
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
baa4a2629e
gnu: r-msa: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.34.0.

Change-Id: Ief67a7396f222a640a3c481cc1ac66c725204e00
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
a1e7f3f4c8
gnu: r-mutationalpatterns: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.12.0.

Change-Id: Ia0dd49b80c91865677cdba3f03f6acabfb5b155f
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
db457fe95f
gnu: r-muscat: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.16.0.

Change-Id: Idf30d38c285a0fddd2aab924ca3017dfd25b587a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
8288c11c51
gnu: r-mmuphin: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.16.0.

Change-Id: Ib8d6583456e76abea75d08dc21aaedffe5a46053
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4b48541f9
gnu: r-mfuzz: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.62.0.

Change-Id: If08902a17ecf2be089677634ee9d348e46295245
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
6faabe3a9f
gnu: r-methylkit: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.28.0.

Change-Id: I3040045d082d80a8e1f1e68691ad3c7bc561d3d3
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7b4893ddb8
gnu: r-metaneighbor: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.22.0.

Change-Id: I24a17f7af9ccfb6a942bd0f24b187948d16bc07a
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4421f7099
gnu: r-metagenomeseq: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.43.0.

Change-Id: Ia7e010752cb480bec3270f79dca748e2ccf4c53b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9be6759f41
gnu: r-mdqc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.64.0.

Change-Id: If60e2e8f16e27362542298799dd30c70f91840fe
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d485c6e39a
gnu: r-maser: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.20.0.

Change-Id: I02074e2ef18c4e2b3414d1d1ac3b325b3a28ee8b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9f7a451e6b
gnu: r-manor: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.74.0.

Change-Id: I646db2726748aefdd8f6a437571cd5e9ad613862
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
30cecc4883
gnu: r-makecdfenv: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.78.0.

Change-Id: Ia37c4a66000d5c781baf2cce4e226aeba7e01d38
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
35d10e3429
gnu: r-made4: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.76.0.

Change-Id: I867a25181c61abbb9d65b0c53dc9cbad9d96a293
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7a12d712eb
gnu: r-maaslin2: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.16.0.

Change-Id: Ib2bcd9049ffccf548295a6f1100a0b1f636f2a31
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
3e7eeef0db
gnu: r-limma: Update to 3.58.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.58.1.
[propagated-inputs]: Add r-statmod.
[native-inputs]: Add r-knitr.

Change-Id: I6f0b489fa71dfa5b359fece946493091f828795e
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
01220bcd00
gnu: r-lfa: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.2.0.

Change-Id: I940fd19d4baf1ba2b5b1a5cb35b4adfc6679a273
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
277cfebf79
gnu: r-lea: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.14.0.

Change-Id: I4a04bc3ea1e348825d40a60e12de6dffc2b2b1ef
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
c08b34c0e8
gnu: r-keggrest: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.42.0.

Change-Id: Ia2b21e89ede37cb437e894440869d5b9226f4244
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4b85fc7175
gnu: r-interactivedisplaybase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.40.0.

Change-Id: Iac0d06e6e39b840ea35dbd0b219bc084bdb61c2d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
2d821734f0
gnu: r-interactivedisplay: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.40.0.
[propagated-inputs]: Remove r-biocmanager, r-dt, and r-zlibbioc.

Change-Id: Id99c933e595dc0291fb3570cd3c8e894e2b1ed26
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
b535785eff
gnu: r-impute: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.76.0.

Change-Id: Idd60ab4f9888c957d1d6e4423a18d0b3b3305521
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
3c8f3921f0
gnu: r-rhtslib: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.0.

Change-Id: I4d3d80435b6125c8111a925fbd3bf36a22f588d0
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
e28ffb7341
gnu: r-rdisop: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.62.0.

Change-Id: I9a43730743b2c5272c811a560c92cac9dddef1c8
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
f246bfb448
gnu: r-raggedexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.26.0.
[propagated-inputs]: Add r-biocbaseutils.

Change-Id: I44e267380de6286edd61f896bd688753c9fc9ea9
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
c333878ff5
gnu: r-radiogx: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.6.0.

Change-Id: I8f2ef5c78fd749487ebb104b2fc11f6406cbf8cc
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
8fab582215
gnu: r-r4rna: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.30.0.

Change-Id: I4a43b9df3f658c6eb34563e6d841f8c9b22a9fb5
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
d3281df551
gnu: r-r3cseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.48.0.

Change-Id: Ifa2805c0d0c76ebcdf0927923b9cb6f44cf9c981
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4e5c14aae2
gnu: r-hpar: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.44.0.

Change-Id: Ie79908c8907b69b3ad537b23ff084025d5a76f14
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
7b39b6c668
gnu: r-harshlight: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.74.0.

Change-Id: Iceae81998c0eeccb8028c513eca46e70b388c985
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
135ebdd145
gnu: r-gsva: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.0.

Change-Id: Ib9bcb30aa669ff9d3445d38e22b656a8b43c2bb7
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cef824b9f4
gnu: r-gseabase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.64.0.

Change-Id: I549083d0614b465d099c8ddfcccfca9e71a0a12b
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
844ea9ff66
gnu: r-gostats: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.68.0.

Change-Id: I3cb2e05944fd4d120e8c34454a5df892d9e105a2
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
f8946a7316
gnu: r-globaltest: Update to 5.56.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.56.0.

Change-Id: Ibf6ca75da7007a2164a3fa98989d6074eb50d266
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
b06f40836b
gnu: r-globalancova: Update to 4.20.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.20.0.

Change-Id: I99f47fabed129759582d568c11d8b495ee437706
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
e7b0370c46
gnu: r-glad: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.66.0.

Change-Id: I0b054d794790e0744aea5570b523fe37697152a9
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4cc5a259ca
gnu: r-genomicranges: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.54.1.

Change-Id: I25c93f71691f7d8348c9a7580cd80b8a586a409e
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
2d2a79ca21
gnu: r-genomicfiles: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.38.0.

Change-Id: I4b5d7c93c6c839e501bbf5e612f7c3385eb44325
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
8fe366bda8
gnu: r-genomicfeatures: Update to 1.54.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.1.

Change-Id: I983eda850bdacb5955be0cbeec620e8835d5055e
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
df588ca56e
gnu: r-genomicdatacommons: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.26.0.

Change-Id: I4e820aaa390f0523467efe720c626d8aeffedd5d
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
0c4c142cde
gnu: r-genomicalignments: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.0.

Change-Id: I30f11c8b0c1cfd58b3501461be7d7465f92b4662
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
dab13c9e14
gnu: r-genomeinfodb: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.0.

Change-Id: I27a7edf8c07b8438bd57632287e89ba1b373e3de
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
9845ee6e36
gnu: r-genomation: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.34.0.

Change-Id: I0ca0de18d3fbcd5a4bf89043647c87849c97eb26
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
035d905385
gnu: r-geneoverlap: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.38.0.

Change-Id: Iade3e4e2c1e65ea160829642d57933d6b8a8f56c
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cdc6c83100
gnu: r-genefilter: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.84.0.

Change-Id: I8dc485dbed3600c0137969f24c39ce1241197347
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
149021491d
gnu: r-gage: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.52.0.

Change-Id: I673e00aaf9e901e17b3167cc6c32e55b90003734
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cdb009029b
gnu: r-fastseg: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: Id3f6098e20062f7d007a54dc5cf83f11b5cf50dc
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
60b6dde680
gnu: r-ensembldb: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.26.0.

Change-Id: Ic2629e5eb3977a74f75fa7e3b5b4ad8e60f42ced
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
6f0023b8a4
gnu: r-enmix: Update to 1.38.01.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.38.01.
[propagated-inputs]: Remove r-preprocesscore; add r-irlba.

Change-Id: I0354f921aa427b6debb9fb5cde6a828529d7dbbf
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
5463d6e997
gnu: r-enhancedvolcano: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.20.0.

Change-Id: Iddbd14ecc8021030a23ffea6ae3217063d8bfebb
2023-11-03 22:49:15 +01:00
Ricardo Wurmus
91bd1e4bb2
gnu: r-edger: Update to 4.0.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.1.
[native-inputs]: Add r-knitr.

Change-Id: Id72516ca581e9b65da3ea1723d008bf3d96b99c8
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
26eee94e13
gnu: r-edaseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.36.0.

Change-Id: I47f5fff9a9e7cbd1ef7d2f816b48e73bd8729a2e
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
eff815f296
gnu: r-dittoseq: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.0.

Change-Id: I6ebd9b4eb8fa2bca41fb7cd8672b3adef642de47
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
bb2fd2549d
gnu: r-dirichletmultinomial: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.44.0.

Change-Id: I4ab77836fdddcbc1764429c48934b5a9a106169a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d7a02f5bf5
gnu: r-diffcyt: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.22.0.

Change-Id: I96e4f706564a7d3438c2c19aa1bb47246ec9b40f
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
82a7530098
gnu: r-dexseq: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.48.0.

Change-Id: I77853f4e1f32063ca02727f046509a9794d34e83
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
f9206bb23b
gnu: r-deseq2: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.0.
[propagated-inputs]: Add r-matrixgenerics.

Change-Id: Ie9a7d4d47f43255c91b73760b5a6c41e4ca115f8
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
dae712d26d
gnu: r-complexheatmap: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.18.0.

Change-Id: I12810450763669d3bd9c3317453deb8ad5a0af42
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
c4c119d304
gnu: r-chipseq: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.52.0.

Change-Id: I237b841206bc72e2d6ead0dceca164087125d794
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
576f2079fc
gnu: r-chipseeker: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.38.0.

Change-Id: I43568da9c0c779e0e167b3e14e80b3264bfbc951
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
53e9d43a83
gnu: r-category: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.68.0.

Change-Id: I3b154d95cd1835ebf253169c391cb64670a6a54a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
257fe883e6
gnu: r-bsgenome: Update to 1.70.1.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.1.
[propagated-inputs]: Add r-biocio.

Change-Id: I80b495762261353db10457c446eb706294eff825
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
1c103cad67
gnu: r-biovizbase: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.50.0.

Change-Id: Ie73b9060694011cca1f8dcbe521d6ed5a6c1303f
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
2fcc6e7ba6
gnu: r-biostrings: Update to 2.70.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.1.
[native-inputs]: Add r-knitr.

Change-Id: I11d29af17c47e495003441ff1c1b0928d1f7f752
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
7f14908649
gnu: r-biocparallel: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.36.0.

Change-Id: I0c780b3dbfa9300751be4aee571816424659948a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
28d1244644
gnu: r-biomart: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.0.

Change-Id: Ibb83b0169aaf0b04236fdf4929405e550b1fa7c2
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0f171c8bce
gnu: r-biobase: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.62.0.

Change-Id: I8a2021b08985bc60854f452e2ea4506d16027534
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0b6f06b5bd
gnu: r-bamsignals: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.34.0.

Change-Id: I25a356b455310048f3a012068a2e0e345f990c0c
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
b1d1a0e9d3
gnu: r-aroma-light: Update to 3.32.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.32.0.

Change-Id: I696b3a1ff0f12c8761f7c11f9acae9ade38a2a65
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
81087f7b83
gnu: r-annotationhub: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.0.

Change-Id: I7f69f2692982fb19a1c0f2619826b5121aca5d63
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
3b9d98df74
gnu: r-annotationforge: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.44.0.

Change-Id: I559d8814a99fb45a15e7456bccc3f60a66dd8311
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
53cd33068a
gnu: r-annotationfilter: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.26.0.

Change-Id: Id84a87bee67a61867022ef5582fe11111840f1d5
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
4b4ecae2c9
gnu: r-annotationdbi: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.0.

Change-Id: If88ce1515962e7ee58ec3dd525bf0bd210230e57
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
beafd8ef50
gnu: r-annotate: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.80.0.

Change-Id: I9ae842dc2e27ade1016404446746e48cbcbeef5f
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d79336aa5c
gnu: r-affxparser: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.74.0.

Change-Id: I7616b594c54c209b277bcbd4bc8ab70ccb521c05
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6f51787d5f
gnu: r-affyio: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.72.0.

Change-Id: I43fd8efe010669092a5aa3ac10f436f8be83208b
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
c849ee92f6
gnu: r-affycontam: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.60.0.

Change-Id: I65ab9049c889217eea1c18c2b9fc43eb090c192a
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
dde158c631
gnu: r-affycomp: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.78.0.

Change-Id: If05e314863a48dcdd9f39238a340b712ab85b805
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d2f808e301
gnu: r-affy: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.80.0.

Change-Id: If9d26b501ea42cbc9ab8c7c475757f307caa3f82
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d04ab2829a
gnu: r-nebulosa: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.12.0.

Change-Id: I27082e1678d6fba4d8eb7b7858823f283d3f4744
2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6d4396aa7a
gnu: r-italics: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.62.0.

Change-Id: I239c9e5242932f806e6a7caa03d967067d71f947
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
aae891dad3
gnu: r-isoformswitchanalyzer: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.2.0.

Change-Id: Idd5f4c733972d4a49e155c439114405e412a03f9
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
71ef609861
gnu: r-iranges: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.36.0.

Change-Id: Ie62dd9084be5a97c6b82c90b7b49a1e5cfef9a77
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4d978fcd17
gnu: r-infercnv: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.0.

Change-Id: Iad990fc16ff634dbbcb99d444eeb0590807f6777
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
76f03bca61
gnu: r-ideoviz: Update to 1.37.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.37.0.

Change-Id: I9e5c7a7c8993cc806fafc710d5b5261ed4d241fc
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
e061d0d925
gnu: r-bluster: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.12.0.

Change-Id: I2d84cc756ffe0da02f37a352441faf5f49b1d3d8
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ea1d58bf25
gnu: r-dyndoc: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.80.0.

Change-Id: Ib441b637725f1472cf0585a86bb61ceb188cbb9d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
736217fae0
gnu: r-dropletutils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.22.0.

Change-Id: I38e686e3bc31e08b63f708a9032f553ae041796d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
965fecac9b
gnu: r-drimseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.30.0.

Change-Id: I1b06c2fdadaa0ff48d83d58cee976e8a15552532
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
00c73d58e7
gnu: r-derfinderhelper: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.36.0.

Change-Id: I800d211ccee7fdf122082145301adcb7395bcfca
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
96060bcb06
gnu: r-derfinder: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.36.0.

Change-Id: I3444c1db2005f19492cdda82aff4231ce273f709
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
073db5d4b2
gnu: r-densvis: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.0.
[propagated-inputs]: Add r-rtsne.

Change-Id: Icafa427d5312969bb41d706a9ba7058dc97136d6
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c5e614c7eb
gnu: r-delayedarray: Update to 0.28.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.28.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I182a54784b97189b5079047706cdb78fffe8b94a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
63c1990700
gnu: r-degreport: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.0.

Change-Id: I2932573e35be1117d5c18a700579c263fa0e3819
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
6ef7931223
gnu: r-deepsnv: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.48.0.

Change-Id: Icbc9a58f3c2a3aabfd0d27c2e265b9e37d2e2715
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2b28a41667
gnu: r-decoupler: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.8.0.

Change-Id: I5481ddd8244451eabf54ad577aab27523c85df3a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ce196875f5
gnu: r-deconvr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.8.0.

Change-Id: Ia673573a345d64e82343eeb5fe0816aa7dcf166b
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
5422b1eb27
gnu: r-decontam: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.22.0.

Change-Id: Icca2a26d70f02c7dce5816f750b7303486a4735a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4e8df83d62
gnu: r-deconrnaseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.44.0.

Change-Id: Iacfa18c72f5194390069e3861b680fc4da10adee
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2e0680f286
gnu: r-decomptumor2sig: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.18.0.

Change-Id: I3412ebce3ca3738ce8e1d0c2651e6b6d6f1bd52e
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
fd6ec75189
gnu: r-decipher: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.30.0.

Change-Id: I53f2a748c52e3a4b9dd26c82e443ffacb330b93a
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
33fe5a6f94
gnu: r-dearseq: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.14.0.

Change-Id: Ifdfe4264814b614f8642542cddf4395c6d725d19
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
11631558c6
gnu: r-damefinder: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.14.0.

Change-Id: I02f9205053c6ded787a437df30bd8ae8e68d9644
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
3f815da53c
gnu: r-dama: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.74.0.

Change-Id: Ieda9ccaf4b4d7fda967170ad9771e65388303f2c
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
8d8f9903b1
gnu: r-cummerbund: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.44.0.

Change-Id: I3417397cbcd463c817299ee2d37343f8933ff8b5
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
352f4079d3
gnu: r-coverageview: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.40.0.

Change-Id: Idb6c881d5a7804984577217908062cc37ad3d2b1
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
09a6c19465
gnu: r-coregx: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.0.

Change-Id: I80acbeb9a1850d3c7a374a71898a04654b5ebd2d
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
570177be67
gnu: r-cellid: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.0.
[propagated-inputs]: Add r-scater.
[native-inputs]: Remove r-scater.

Change-Id: I7be617a312fb009c6986e947e21b6cfd862db873
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
59798d25e2
gnu: r-cardelino: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.4.0.

Change-Id: I3f06c5b266bd6d4ae09da8ebb91743cb57468746
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c2460ad512
gnu: r-breakpointr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.20.0.

Change-Id: I1598b330dbcf5b78ba9fc7623892870d1899233c
2023-11-03 22:49:13 +01:00
Ricardo Wurmus
44765e6f2c
gnu: r-biocgenerics: Update to 0.48.1.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.48.1.

Change-Id: Ia2721e9ecbc2f4649962c4b4b5297616fbb5b169
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
278a436a00
gnu: r-biocversion: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.0.

Change-Id: Ic343f3a797330ae85ce86166805189d5738107f2
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
268cf54fbf
gnu: r-barcodetrackr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.10.0.

Change-Id: Ia3ad0d4069441dd9a0b6a93f26e4791eae3ab408
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fed0d240b5
gnu: r-banocc: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.26.0.

Change-Id: I4f20020f49a3eeba9b97a1154b7772ee5232cb82
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
70f14dd31e
gnu: r-bandits: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.0.

Change-Id: Iafbafd9f7275b9936fa73d47f0b47a1a4ec6ea7a
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
7bd373b25e
gnu: r-bambu: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.0.

Change-Id: I14837124a4a081c29e696ad47e27aaf9d62127b1
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
caa56d8e98
gnu: r-badregionfinder: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.30.0.

Change-Id: I24f656ea77622211c04a4c09a7bb541159680b8a
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e777951d2b
gnu: r-bader: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.40.0.

Change-Id: I4aff6ebbbdfba705b97c0cf8b7a1166f855bafe6
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
3eb6468e63
gnu: r-basespacer: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.46.0.

Change-Id: I22960b809658603aec589daa7c85acc960727bd4
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f93200960b
gnu: r-baalchip: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.28.0.

Change-Id: Ice6916945c94202938b763e4cbabac35385375fd
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
319d9c6cd3
gnu: r-awst: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.10.0.

Change-Id: I077dabb772d8a9c547e6ac23622b78c3c319f3cc
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
35fe2b495d
gnu: r-awfisher: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.16.0.

Change-Id: I08e4f96c8db4758aa0ef04a46fdd715bfcd76fd7
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
601f91b94d
gnu: r-attract: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.54.0.

Change-Id: Ie8cfd6d7c45b6a92bc2c4789e7b2d088da470118
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e1487a6e2a
gnu: r-atsnp: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.18.0.

Change-Id: Ic703de99af48a7b95142b2fdfdf01a32490acf5e
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
74d22e52ce
gnu: r-atena: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.8.0.

Change-Id: I99ef991a397053999dc4216189a76caf34e1b6c5
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
46b96b9383
gnu: r-asset: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.20.0.

Change-Id: If9a92e17b7a5c7328d6352140bdd8732d4c2a78c
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
42dea0bd0a
gnu: r-assessorf: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.20.0.

Change-Id: I4beb9578807bc9cb433606c06f5505bc180770f7
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
2688eb505d
gnu: r-aspli: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.12.0.

Change-Id: I717b99ed6a348749b2549f2386f793b11106d0e2
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fa5b2b5dbc
gnu: r-asics: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.0.

Change-Id: Id9be760027609e1aa5729969e24e97b34f3141d9
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
9209b772b5
gnu: r-asgsca: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.36.0.

Change-Id: I0bcb7970cf29513a7551134c9b425cda337320ed
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
67db607930
gnu: r-aseb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.0.

Change-Id: I375a4de7c9836fbf851ca033e7ab4ce25cb857a0
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
dc87880cb2
gnu: r-asafe: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.28.0.

Change-Id: If9d94cbb09fb2872fdf5224df95495666c2820c9
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fc79ff45b1
gnu: r-arrayquality: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.80.0.

Change-Id: I0ef5275399cc423785dfbb30b00ee5148f18906e
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f1b4c1eaec
gnu: r-arraymvout: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.60.0.

Change-Id: I42b04c02fd24de6898c6be7c18abeeb534737860
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
637217271f
gnu: r-arrayqualitymetrics: Update to 3.58.0.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.58.0.

Change-Id: I5ee044a089e154f13250890ef09f06c481598296
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e79d0a54b5
gnu: r-arrayexpress: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.62.0.

Change-Id: I4d96c4ea89cd51426b0405d26818062751c43d71
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
4b6dfa6785
gnu: r-antiprofiles: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.42.0.

Change-Id: Iee706af570ae789b897f4cfb0a53a474f8615d12
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
79d50ddc44
gnu: r-annmap: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.44.0.

Change-Id: Id960993131170a85231f5b21b354d67b5466ed99
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f625fab931
gnu: r-aneufinder: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.30.0.

Change-Id: Ib57882838b947c014b2fad4c8c829d91c7aa6a17
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
d79c200c1e
gnu: r-altcdfenvs: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.64.0.

Change-Id: I10775d097dfce34d8b3d2846971a4318368a871f
2023-11-03 22:49:12 +01:00
Ricardo Wurmus
00dabe4d4f
gnu: r-alpsnmr: Update to 4.4.0.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.4.0.

Change-Id: If005837c237e26e32dda5c69a4bfdc9c20d7a0b1
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
5441a7cd9e
gnu: r-alphabeta: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.16.0.

Change-Id: I6abd11e9a22d73737975c660e565944aead7e14b
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
dc6a5a7045
gnu: r-alevinqc: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.0.

Change-Id: I96c53e6ac99d375da3a87cdc3ffad888f82bbb80
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
99a2acb5ab
gnu: r-aldex2: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.34.0.
[propagated-inputs]: Add r-directlabels, r-lattice, and r-latticeextra.

Change-Id: Ibd4295392b188034231f54d129af02318510932e
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e2c41d2c65
gnu: r-anvil: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.0.

Change-Id: I154aa331580809b550f33a13cfcebecbcc165820
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4226d5138b
gnu: r-annotationhubdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.32.0.

Change-Id: Ic55ce4dbad0dd504760a40ef1ac4386318b262cd
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
25da6c744e
gnu: r-ancombc: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.4.0.

Change-Id: Idccde9e571c9ee7b0014bbe4f7328e5b37d764d9
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4771d5687c
gnu: r-anaquin: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.26.0.

Change-Id: I74a39d84856646bcbe0bbc9006c92095145017be
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
578489abe5
gnu: r-amaretto: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.18.0.

Change-Id: I007bd666a0344d206b418d0c45a816518c5dc65c
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
84e9f46720
gnu: r-amplican: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.24.0.

Change-Id: Ifc0a8d5d2a98a4025ba85759bce75a452275f065
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6f7723c3ce
gnu: r-amountain: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.28.0.

Change-Id: If5cdf59afc38a70335b682b0687b63f33db77a63
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4658cffbfd
gnu: r-airpart: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.10.0.

Change-Id: Iafee8663fb558b5d73f662a4ea1fb0a1999e109e
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
77d2e3167d
gnu: r-aims: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-aims): Update to 1.34.0.

Change-Id: I494a799b261fedc20204837edbd9017e540de81f
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ac4e8f6cfd
gnu: r-adductomicsr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.18.0.

Change-Id: I4149f8e884c6e8486c5006103c5dd2da82a070e1
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ecd66e4010
gnu: r-agilp: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.34.0.

Change-Id: Iae3bbb41a891da0da550ad66ce686fe53fc35be7
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e628902ae8
gnu: r-aggregatebiovar: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.12.0.

Change-Id: I4fc26155d43bf89bc5c937d59bae3960d79f1429
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
a8212a42d9
gnu: r-agdex: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.50.0.

Change-Id: I2e9bc52fc339ce7300f13485a16f7e674ed7cb73
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e3acce66d9
gnu: r-affyrnadegradation: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.48.0.

Change-Id: I2f12a2ada8aa83851a25cd16884c2c72e2ab3f02
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
97b1261e63
gnu: r-affyplm: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.78.0.

Change-Id: I96fe37a22d07abc00125df0a229cf7d2d0d136c7
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
14d87c1819
gnu: r-affylmgui: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.76.0.

Change-Id: I169ee4e2a1462140fe2a203ef4a934fcf386a566
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
8ea9b315fd
gnu: r-affyilm: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.54.0.

Change-Id: I1b5989c62da7ce108d3e8ec344fd47a7b33f2856
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4d0c23545b
gnu: r-affixcan: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.20.0.

Change-Id: Ica782aa7cb2603374425e2abc921ade43592aa02
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
c02bc41c68
gnu: r-adsplit: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.72.0.

Change-Id: I2851c235df8c18ae50b931736d65f02aa4403d39
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2f0f6284d1
gnu: r-adimpute: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0.

Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
fc9baf4ad2
gnu: r-adamgui: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0.

Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2662a6af48
gnu: r-adam: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0.

Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
de5c088e06
gnu: r-adacgh2: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0.

Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
7e7d075194
gnu: r-absseq: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0.

Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
d08d58d828
gnu: r-abarray: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0.

Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6ea450f390
gnu: r-debcam: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0.
[arguments]: Remove old comment and enable tests.
[inputs]: Replace icedtea with openjdk11.

Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
bcf0ecd1ec
gnu: Add r-hpo-db.
* gnu/packages/bioconductor.scm (r-hpo-db): New variable.

Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6304d3cce6
gnu: Add r-mpo-db.
* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
2023-11-03 22:49:11 +01:00
Ricardo Wurmus
48bf30e3b1
gnu: Add r-fancova.
* gnu/packages/cran.scm (r-fancova): New variable.

Change-Id: I9bfef352be86c08707edfee0bfb171094114d158
2023-11-03 22:49:10 +01:00
Ricardo Wurmus
75ce5b0466
gnu: Add r-collapse.
* gnu/packages/cran.scm (r-collapse): New variable.

Change-Id: Ib6690a85987e14930057ed960fdd229706b0c35d
2023-11-03 22:49:10 +01:00
Ricardo Wurmus
4f85beac2d
gnu: Add r-msexperiment.
* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
2023-11-03 22:49:10 +01:00
Ricardo Wurmus
bbe7ea0d27
gnu: Add r-sparsearray.
* gnu/packages/bioconductor.scm (r-sparsearray): New variable.

Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
2023-11-03 22:49:10 +01:00
Ricardo Wurmus
f80de2f03f
gnu: Add r-metabocoreutils.
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable.

Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
2023-11-03 22:49:10 +01:00
Tobias Geerinckx-Rice
2059b9fbe0
system: vm: Include the cirrus driver in the initrd.
This is Ludo's suggestion at <https://issues.guix.gnu.org/36069#26>,
with an added guard against duplicates and a tweaked comment.

* gnu/system/vm.scm (virtualized-operating-system): Add "cirrus" to the
list of INITRD-MODULES.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I1a86286586eee0b8c39706544778c7911a86da33
2023-10-29 02:00:00 +02:00
Afkhami, Navid
c9361460de
gnu: Add r-miamiplot.
* gnu/packages/bioinformatics.scm (r-miamiplot): New variable.

Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-03 14:10:13 +01:00
Skylar Chan
6ae8fd7aa7
gnu: cmark-gfm: Update to 0.29.0.gfm.13.
* gnu/packages/markup.scm (cmark-gfm): Update to 0.29.0.gfm.13.
[arguments]: Use G-expressions.

Change-Id: Id8f856cfa8020bc8028d9bf3041a7c651b8b0102
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:14:06 +00:00
Timotej Lazar
021b222cda
gnu: mupdf: Update to 1.23.4.
* gnu/packages/pdf.scm (mupdf): Update to 1.23.4.
[source]: Switch from gz to lz tarball.

Change-Id: Ie4d20c95e509960390dce3da77315fa2bf2d688f
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:14:06 +00:00
Timotej Lazar
c9a7cbf0b7
gnu: syncthing: Update to 1.25.0.
* gnu/packages/syncthing.scm (syncthing): Update to 1.25.0.

Change-Id: I39ebd12e96fb09386cf51bd42cd5241f3820c16c
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:14:06 +00:00
Artyom V. Poptsov
ada2152893
gnu: go-github-com-hjson-hjson-go: Update to 4.3.1.
* gnu/packages/golang.scm (go-github-com-hjson-hjson-go): Update to 4.3.1.

Change-Id: Iee2aef614686cbf79f388e2dd9435745d5502e2a
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:14:06 +00:00
Benjamin
66ff9c82a3
gnu: neovim: Update to 0.9.4.
* gnu/packages/vim.scm (neovim): Update to 0.9.4.

Change-Id: I7246390c69875cbc1d7442afe38abd31ce85616b
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:01:29 +00:00
Julien Lepiller
9024524de1
gnu: guile-netlink: Update to 1.2.1.
* gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.2.1.

Change-Id: I3018cf7e0b6cd460bf27b8bbe1b031cf0dafe547
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 10:00:41 +00:00
Jaeme Sifat
809f461ec1
gnu: foot: Update to 1.16.2.
* gnu/packages/terminals.scm (foot): Update to 1.16.2.
[arguments]: Use gexps.

Change-Id: I0615f6251a918a572369c05b126853f79e9fca4c
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:59:41 +00:00
Kaelyn Takata
ada7e0d042
gnu: wine-minimal: Update to 8.18.
* gnu/packages/wine.scm (wine-minimal): Update to 8.18.
[properties]: Set upstream-name.

Change-Id: I018c320a990bf101d193095b68c44312ce9653a4
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:56:01 +00:00
Simon Tournier
4471cfd099
gnu: emacs-ox-rss: Update upstream URL.
* gnu/packages/emacs-xyz.scm (emacs-ox-rss)[source]: Update upstream URL.

Change-Id: I66f0aa2cf5ee08705a89d0683e638e3fa1e1fb12
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:46:02 +00:00
Timotej Lazar
5378149acc
gnu: msmtp: Update to 1.8.25.
* gnu/packages/mail.scm (msmtp): Update to 1.8.25.

Change-Id: If6a03b52734fa09dc6e8ffa5dd893f7d80b86aac
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:46:02 +00:00
Timotej Lazar
93b8d2e730
gnu: wlr-randr: Update to 0.3.1.
* gnu/packages/wm.scm (wlr-randr): Update to 0.3.1.

Change-Id: I1b0d9ae20c9c4a249b3679431101edfa61e39d44
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:46:02 +00:00
Cayetano Santos
a4ec0c6ca0
gnu: emacs-mastodon: Update to 1.0.13.
* gnu/packages/emacs-xyz.scm (emacs-mastodon): Update to 1.0.13.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:46:02 +00:00
Timotej Lazar
399cd64bc9
gnu: asciinema: Update to 2.4.0.
* gnu/packages/terminals.scm (asciinema): Update to 2.4.0.

Change-Id: I3e0fc7cc16aaebdf8346bb715f07021a5d568163
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-03 09:46:02 +00:00