Commit Graph

116133 Commits

Author SHA1 Message Date
Ricardo Wurmus
92a1f44f6d
gnu: r-ebarrays: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.66.0.

Change-Id: Ib13ff4d7edabeba4c3250337f0d23629b9426328
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
72ad29f730
gnu: r-reactomepa: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.46.0.

Change-Id: I543add10e14ad634795e29f6db2e07a518878108
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
26e71b7a72
gnu: r-graphite: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.48.0.

Change-Id: Ifcaed9653072ac86fbda18ac7dcf3686dd66116e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
026bc372d8
gnu: r-biobroom: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.34.0.

Change-Id: Iba62b38441f0127acb0880105dc4fb174238412b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
c0beba2647
gnu: r-bioassayr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.40.0.

Change-Id: Idfd958f0ea6e3e73c83a2f67b59c2f600c4de109
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
be0482d40f
gnu: r-fmcsr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.44.0.

Change-Id: Ie4da389382e4d3836342be872a88dcbeb69f59ed
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
dadf10ed8b
gnu: r-chemminer: Update to 3.54.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.54.0.

Change-Id: I43836d9323e3034c02a9864deddaf4a854a8e909
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
8d14b99d75
gnu: r-chemmineob: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.40.0.

Change-Id: Ic7ab360eafea01ea0f7f586b588120c468d8ffd6
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
df794c84f9
gnu: r-biggr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.38.0.

Change-Id: I2dd8a24f1f73782ab888af0f89654e0ef7302b3e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
0f8cccb01f
gnu: r-hyperdraw: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.54.0.

Change-Id: I0d49e7993e9225d409e863ddba3f6f832b3f95aa
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
59e55fc39e
gnu: r-hypergraph: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.74.0.

Change-Id: I7053e0b906422526bc57220fc63fde8700a40524
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
0fc5a510b5
gnu: r-hybridmtest: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.46.0.

Change-Id: If225eb7af55746651921d924a10ee95ee9b071b8
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
772c6fb840
gnu: r-rsbml: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.60.0.

Change-Id: Ie1f3bc87e1c4c5df2fece70aa0a72133e038f347
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
99ff99c9eb
gnu: r-bifet: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.22.0.

Change-Id: I8207d5945dcbba850610e1ce6b77f834c927fa2c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a70ca6a613
gnu: r-bicare: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.60.0.

Change-Id: I231f0c6f24b62a9bf999b39af003156cd1578289
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
6f38f25816
gnu: r-bhc: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.54.0.

Change-Id: I52b46125e0cb912b4e27d4198a676d311a5c5eb9
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
bab03df210
gnu: r-bgx: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.0.

Change-Id: Idcab4760b9e96d74f96c0f9a09c945d9d960e598
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
2fa21de9c2
gnu: r-acde: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.32.0.

Change-Id: I2f7fd79361be6326b307fbb7d3ef4c7bf6a585ed
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
84de1e4ade
gnu: r-acme: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.58.0.

Change-Id: Ife3005c7a63743eed0f86c5037a06d9e38a14097
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
85060391ba
gnu: r-acgh: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.80.0.

Change-Id: Ic9fb3c4309c733b49f6af9e37ed80a519bdf9357
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
865e3e75a8
gnu: r-ace: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.20.0.

Change-Id: Ifc01abdde81766045c6f4e47df49f45785f59f94
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
45cbc2372e
gnu: r-universalmotif: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.20.0.

Change-Id: I72bb6459df1e04875888fa9f77b726ec54055ca3
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
642f470df1
gnu: r-unifiedwmwqpcr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.38.0.

Change-Id: Iee0e28569f7be1940b6a3dbf167dc916c16833df
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
428f4cb50b
gnu: r-ucell: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.1.

Change-Id: I2bf8868b8d1f7fa1bdedfc6f999e586a869b9e1e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3ff2e070fe
gnu: r-htqpcr: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.56.0.

Change-Id: Ib8428af779a98690de7304225da31b7697d1fa45
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3df0e523f2
gnu: r-variancepartition: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.1.
[propagated-inputs]: Remove r-doparallel, r-foreach, and r-progress; add r-corpcor and
r-fancova.

Change-Id: Iccea2f1b1929d23b821142aebe121bc09ff62b44
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
75cac71be2
gnu: r-variantfiltering: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.38.0.

Change-Id: I598d983c5d7e0f45da04c14f2fc6453e6ef88d98
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3c93fab37f
gnu: r-tilingarray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.80.0.

Change-Id: I78c5d57af6117ce78232ebfa065416fd7d2a6cc4
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
43ea1c324a
gnu: r-wavcluster: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.36.0.

Change-Id: I24818db21be07d1f5476dc5abea2b067d9b6623c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
fb6da71504
gnu: r-reqon: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.48.0.

Change-Id: Idd4e403b3ed3ca84cad80657a46fd4c9e0c1582d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b22318e0af
gnu: r-seqbias: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.50.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: Ibf4e49bffefec0eb6a1e4e6d1c29383c37f8bbfb
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a36fba9d1b
gnu: r-bigmelon: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.28.0.

Change-Id: Iaf3adc3d1d05923bd031c52c03d1fc7a76955720
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
86bc7de016
gnu: r-gdsfmt: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.38.0.

Change-Id: If6494e1a21fcde1e63ace19746346368234a8f6b
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b90a54605a
gnu: r-watermelon: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.8.0.

Change-Id: Iefca41487698e294fb369f4016f67fb147464e72
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
ef52ea9c6d
gnu: r-roc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.78.0.

Change-Id: I54dc89ba0e9bc6c3274da7af2e43191c2a6f9e2f
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5fa4d39b7a
gnu: r-genie3: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.24.0.

Change-Id: I5fd664aecec4037793a190326936c11316499f8d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
8ef81e22b3
gnu: r-circrnaprofiler: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.16.0.

Change-Id: I31457048a3c1659b0765ae1732f492567c7397dd
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5e268c72a4
gnu: r-cicero: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.20.0.

Change-Id: I23c4a69ca3b7b97811fb4b919646a2d998cb931e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
d73af33e49
gnu: r-chicago: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.30.0.

Change-Id: Id395b5593684d98ddfe9af7a65fb03c2be46d43c
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
93322f6240
gnu: r-depecher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.18.0.
[propagated-inputs]: Add r-collapse.

Change-Id: I24ec77ec5ec4f85e21eb00de3494106876c0ec40
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
a32a12ec27
gnu: r-flowsom: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.10.0.

Change-Id: I18e214006f6c4ae17d6ddc53a744e9d7b1747260
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
c9533f5df9
gnu: r-cytoml: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.14.0.

Change-Id: Ibfe47c6d75d500b0f89fd1f8abf3d670035136d3
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0d5d1163d7
gnu: r-opencyto: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.14.0.

Change-Id: I888c78a43379b91be3ce60e761e6b1b199fcf86d
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
127590d8ad
gnu: r-flowstats: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.0.
[propagated-inputs]: Add r-clue.

Change-Id: Ib1c5eb4d5122bf25ca0e68d4404777cc8406526a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d97e582d89
gnu: r-flowworkspace: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.0.

Change-Id: I97248860f6b887d00787e22e9ac873123ba1f2c2
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e6188fe703
gnu: r-rprotobuflib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.0.

Change-Id: I91320a80b921f1dc7b9fb858465328be105170aa
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ca1998e47d
gnu: r-flowclust: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.40.0.

Change-Id: I50c0766d93b13489adfe800d2d06b11545bfa43b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
be37da9b54
gnu: r-flowviz: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.66.0.

Change-Id: I118ccc0471534316abff95cd1ab9eabd859f6831
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
32a16be414
gnu: r-ggcyto: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.30.0.

Change-Id: I961a281d462a3e4105b58ba692590812fe375a3f
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
451730851d
gnu: r-ncdfflow: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.48.0.

Change-Id: Ifa2ccc14f1f4b23fe582f31c219eac0bb5d0b9db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
3ef5cbf874
gnu: r-flowmeans: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.62.0.

Change-Id: Ia9a88f9dbb6f061657444da54312c1303002c578
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
bd5d74cbdf
gnu: r-flowcore: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.0.

Change-Id: Ib1498e1d9fa450ef256487fe5137a0e2a4cf1fea
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
10d2d6225d
gnu: r-cytolib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.0.

Change-Id: Ib7dba25c2a9a7ccd400bf0f487f2cb01914411ad
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
196e98c19b
gnu: r-consensusclusterplus: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.66.0.

Change-Id: I96e93fff95f137a17c727219c53013cb02c22017
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
8c7c2359f5
gnu: r-flowai: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.32.0.

Change-Id: I7ef9deac6a209985c3fce5f6de1c36828c8dd3d9
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d1e907e41e
gnu: r-rsubread: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.0.

Change-Id: Iae1f568a867b22833df9927f856c75e6d7cd4d48
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
bea6315bb8
gnu: r-annotatr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.28.0.

Change-Id: I29292f62456e22cfdcf6d00a30c279270380b26e
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d29c9b145b
gnu: r-biosigner: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.30.0.

Change-Id: Iabd8f36615e8196e7e3df266ba8dd721bb398fba
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
c73f59a9d2
gnu: r-ropls: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.34.0.

Change-Id: Id26eafa238908b529270ffd1470102f677f10c65
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
69b935ebc1
gnu: r-multidataset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.30.0.

Change-Id: Ib3dcef1bfd56a01dee0cd6ba2a1ebefb65bb1e5a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
633560c283
gnu: r-birewire: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.34.0.

Change-Id: Ib3971ff76cc414462c14ab739855d14c3ec40df7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ffccc882fa
gnu: r-rqc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.36.0.

Change-Id: I7ccebf76e59f39512d24399e78a1422644cd9f6b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
a6c729f6ac
gnu: r-quasr: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.42.1.

Change-Id: Ia7d0cb971a413b41864170e464a1533ee66d4ae7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
6a62e84948
gnu: r-rhisat2: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.18.0.

Change-Id: I79c54d0826ca2b6284b9ef8682f58042e3d81443
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e92cb01bc3
gnu: r-sgseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.36.0.

Change-Id: I8cbf81533b9153ce237819d17241928aced30f2b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0f4db0e2de
gnu: r-rbowtie: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.42.0.

Change-Id: Ifc4c80de76e82cfc93bf848d6a08460ca81023db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d2ee7821d1
gnu: r-iclusterplus: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.38.0.

Change-Id: I546a8dabf09008ba0a35c3523f8956fe59f573c8
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
77491d9dc4
gnu: r-biocfilecache: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.1.

Change-Id: I5e71ba6fe180d64679b163b2863bd96fc1ca77ae
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
6b18a2b370
gnu: r-arrmnormalization: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.42.0.

Change-Id: I54b1101547a4e360dd9e5a24425b42bad3cc77dd
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
f059ade231
gnu: r-progeny: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.24.0.

Change-Id: Ib4f1cfd6c92defe302bf07fe4b3ca4ac4df37fab
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
12a25de450
gnu: r-rbowtie2: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.8.0.

Change-Id: If97d5baf3dea63021e5f44c4bced43cd10070eda
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
cd3f0aa976
gnu: r-zfpkm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.24.0.

Change-Id: I5decb580a3fcfe73ecedcfe0acb4f8a5410f9ac3
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
9cd71a55e8
gnu: r-zinbwave: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.24.0.

Change-Id: Ibf32bcbf8919363ff413f4abf96473179a4e9d55
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
3393f89fdc
gnu: r-webbioc: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.74.0.

Change-Id: I7fdd670151d5aa49b1a99bd5d6dd2c107db79c1f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0c0d4e9d74
gnu: r-widgettools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.80.0.

Change-Id: Iaa880fa331e4ddeec45ef36f68ab3e7e4003a046
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e83637da77
gnu: r-wiggleplotr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.26.0.

Change-Id: I971b261e23b896e51618fa4a064152891ba8d03f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
bf2e150d5c
gnu: r-wrench: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.20.0.

Change-Id: Ia2597dfb17c6a04ac19253663fa50d0155a3c8e0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
4464ee09a8
gnu: r-wppi: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.10.0.

Change-Id: Idbb7791b3fc6bd0beaaf2544ee1765ae4980f005
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
6ea628ec1c
gnu: r-xcms: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.0.
[propagated-inputs]: Add r-msexperiment, r-progress, and r-spectra.

Change-Id: Id2f96ef91565b64456d41fc49cd157a0bcb79967
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
c76e35ac50
gnu: r-massspecwavelet: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.68.0.

Change-Id: Ie5da6f03da44a85d16ecd610f7d935b460fc05ce
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8bb88c275f
gnu: r-roar: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.38.0.

Change-Id: Ia5adaa7e12a1dfba8840aa95ebbabf2edbcd1525
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
385193c92b
gnu: r-yarn: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.28.0.

Change-Id: I2af46c89a04e0d5fa6e82ae8c366e731b4b0aa2f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
92853c5e1a
gnu: r-quantro: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.36.0.

Change-Id: If092862e4c9b370b294809762523c93f87782758
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
a05f9cbab2
gnu: r-gcrma: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.74.0.

Change-Id: If9e27c7f36d132e71c24900cfaf052817510faea
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8d91d64009
gnu: r-yapsa: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.28.0.

Change-Id: I5e3e4f3136a4a490cedb45b88d4879cfd210e249
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
d3550856ab
gnu: r-somaticsignatures: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.38.0.

Change-Id: If54820695dbbe0b8940f4f9b9e8e0bdd5268e0ed
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
5072f0664c
gnu: r-gtrellis: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.34.0.

Change-Id: Iab26e32c78943d713f889ccec1d1af863b9daa7e
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0ba77ac5ae
gnu: r-yamss: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.28.0.

Change-Id: I7045aee52aeabb0605249f6da52dc362c4399d04
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
ec2cd3861c
gnu: r-ebimage: Update to 4.44.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.44.0.

Change-Id: If431ef62ecf9f710394d285fb15ebb52e4cab80c
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
23c25f0423
gnu: r-aucell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.24.0.

Change-Id: Ic0f65a553dc0ea84db788621367815882b592b27
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0eb64979aa
gnu: r-allelicimbalance: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.40.0.

Change-Id: I89a4410e142a0f00942765d98fa1a8ba27706c75
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
b107aaf47a
gnu: r-annotationtools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.76.0.

Change-Id: I19bd7902041d29c1cd94e31a178259f51e6d4a25
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
29a09dbdef
gnu: r-gofuncr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.0.

Change-Id: Ic00366af82dd07fafe0483e37a9522f7a472ff6a
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e632f73afc
gnu: r-atacseqqc: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.26.0.

Change-Id: I1023d6731c837dd64a232c73520e81a4389ee1a0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
7fe9a89707
gnu: r-genomicscores: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.1.

Change-Id: I39d27518b7ccbc5511d3aeb12bc16436889ffb36
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
dea0576013
gnu: r-motifbreakr: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.16.0.

Change-Id: I89e726ac4e415a80afca1e415c355a94752b8a47
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
01612dd2a6
gnu: r-motifdb: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.44.0.

Change-Id: Iff85aa4dd21c45eac09920cb77400b934caa0988
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e4772226b3
gnu: r-rgadem: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.50.0.

Change-Id: Ie41481841a070484dec3beaa146deab99508c348
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d9ba7e918e
gnu: r-bacon: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.30.0.

Change-Id: I31555dc9dc0502224543902c7b6eb364b9ce7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
0282bb3aa6
gnu: r-abseqr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.20.0.

Change-Id: Id4fea6a81954388c46417e1de5ea5c3b54b60025
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d478ba2bfb
gnu: r-a4: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.0.

Change-Id: I23de20743d631b3ef3b18707d1c3c1cae67108be
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d69276f7e2
gnu: r-a4base: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.50.0.

Change-Id: I5c2ecfe6e888af18fced6571461b4278a1e188fe
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c6ad1d6186
gnu: r-a4reporting: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.50.0.

Change-Id: Ifb88020fcd8812937e1d4cf2d63f7e2141285c5a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c5a7e436a4
gnu: r-a4preproc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.50.0.

Change-Id: I2b73b3e793131c8d07258bb5f3c0e1304f8b788f
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b89491fcfb
gnu: r-a4classif: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.50.0.

Change-Id: Ib9624648a85cd945eeb4de4f78b1d3c214b3efc4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
17290efded
gnu: r-a4core: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.50.0.

Change-Id: I94addc286eca817db8220eaa83b69742c89f0b25
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7e82848893
gnu: r-annaffy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.74.0.

Change-Id: Ib9e106212783df75fbc03eea51d1c768720f0340
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
97a6b7b971
gnu: r-mlinterfaces: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.82.0.

Change-Id: I1c2812f02206e6026ca4b133f46bb45e45c5d827
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c7d59ff365
gnu: r-clusterexperiment: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.22.0.

Change-Id: I79d2df6fb405ec2870363fd9f63d6d72a3c17b5d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b3f89195e9
gnu: r-gosemsim: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I039ed379e9fa3870bd40a68dbfd6446ca35dafc0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
aa61c81823
gnu: r-heatplus: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.10.0.

Change-Id: I753528f67b5b7e3640a6e59caac755fcd755b5c5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c3d0f015cf
gnu: r-varianttools: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.44.0.

Change-Id: Ib9dc77f1ba4962d9cbb8cad7ebb8026d8e124ffa
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
db11b1bbe0
gnu: r-tradeseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.16.0.

Change-Id: I65377ca43aa3075f7ce401494f1a335b3302306d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5c7985b3b7
gnu: r-ioniser: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.26.0.

Change-Id: I19866002eb8259be80d4f3541fd37020af802f39
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f1c930495b
gnu: r-linnorm: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.26.0.

Change-Id: Ie39f7252178e41bcd103ea8a6c857992eeed7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
038df629a9
gnu: r-lumi: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.54.0.

Change-Id: I74cb1e60a1ba2e9c62b412eec51b71c9b19aa8c7
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e55a61949e
gnu: r-lefser: Update to 1.11.5.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.11.5.

Change-Id: I30883461fef45b2e535175c8534276372e1ef9e4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e6f93e58c9
gnu: r-methylumi: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.48.0.

Change-Id: Ie17336e7bbfe5b9c74beb3887596d2993adbfb4c
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9d69d64b46
gnu: r-siggenes: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.76.0.

Change-Id: I89ebcf7df2771f8ab19bd74d93ba15b72e1a70a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
54a13eff99
gnu: r-illuminaio: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.44.0.

Change-Id: I8da181164ac8e9c98ecc892a7d1fe878cdced4f0
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
cb94125b4c
gnu: r-geoquery: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.70.0.

Change-Id: I9d58b9ed1ad004177a354c7c688ec431368373f8
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dffab6110f
gnu: r-scone: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.26.0.

Change-Id: Iae18ed324d7925e647a664e1547fa0eeaedab6a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
61a2dc87d8
gnu: r-scdd: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.26.0.

Change-Id: I631b260c9a8069fc88140c2a0c9f700f1f321a1a
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
005c3a7ec9
gnu: r-noiseq: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.46.0.

Change-Id: Ie5e5043de7def381411ae1637ebc224f82818eee
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
444871c0f2
gnu: r-sangerseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.38.0.

Change-Id: I53de38940e7ce55f35de24e2f9b5dbf83fcc4f90
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1b63a91e57
gnu: r-monocle: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.0.

Change-Id: Ib0a52eae3545712f3b96e42addf2d9c647eb29f9
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c0ea127d3f
gnu: r-dnacopy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.76.0.

Change-Id: Iba9ff03065138d1fbd295b28d91c06f5596e2048
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
819eb5ca24
gnu: r-chipexoqual: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.26.0.

Change-Id: I1246ce25e9da6aed07d52683e0f8bec677c6a41e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
02ddd7963b
gnu: r-destiny: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.16.0.

Change-Id: I3c22657e57062e00b135e94c764db7f5fbce4a41
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dd6e945cb4
gnu: r-biocsingular: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.18.0.

Change-Id: If1228bfbe2b4a8bd84de6c645356ea35ed632262
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1672a49c4e
gnu: r-metapod: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.0.

Change-Id: I6ae84bb0ab8e68833206b214046a0144f60ae3cb
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
8aeaa84e2a
gnu: r-ggtree: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.0.

Change-Id: Iec5a7eb16425f5c3dbe2d457a71e70c74eb1b159
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
74253229f1
gnu: r-treesummarizedexperiment: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.10.0.

Change-Id: I287f495062c808354edef562d6844d8bb43cfaef
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a7cd80eaf1
gnu: r-treeio: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.26.0.
[propagated-inputs]: Remove r-cli.

Change-Id: I7776d679c5af2e622451204ea586c297d4287389
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
b8daed53af
gnu: r-scaledmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.10.0.

Change-Id: I50c8d29395648059e815c2e9ca2d3a07d17d2aba
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
69bd0f8752
gnu: r-biocneighbors: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.0.

Change-Id: I0e0dd9c4b2d1a4077176614814ef40a3f8c26e30
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f9b3ee2f5f
gnu: r-ruvseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.36.0.

Change-Id: Iadb6c4c38b63a986bb845a482d00f8444b47b6ef
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
9ac392fc93
gnu: r-dnabarcodes: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.32.0.

Change-Id: I7b454a6429b4e7677c300607c794180364d61bb2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
642b3c3e27
gnu: r-inspect: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.31.0.

Change-Id: I05f8e69565de977045a28a6045e1dfe131ef4b09
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
81d0dedf9a
gnu: r-plyranges: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.22.0.

Change-Id: Idb42fef9913b8a1b6600a544928f39ec4b7b16fd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
7aee11f63e
gnu: r-plgem: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.74.0.

Change-Id: I11d5554e5b7833540bcbe327d73240844e816573
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a5eefabd87
gnu: r-rots: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.30.0.

Change-Id: Ia13e99ece1a38eac6a5e370fa18da0ca93e4c962
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e0031de95b
gnu: r-glmgampoi: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.0.

Change-Id: Iaa42254b9765e0942e045f19c15b0b9c04936235
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3e8ae47f0d
gnu: r-glimma: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.12.0.

Change-Id: I075f2b5990724ab8e2e15e88b6ed5acd75a76e80
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
1a27f050be
gnu: r-goseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.54.0.

Change-Id: I42576c75b508d8a31f26042d148065896b65a6f2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
256a5afa3f
gnu: r-ctc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.76.0.

Change-Id: I71627e23e977d69582ac593e35f7306491e04f92
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
4dd7a424bf
gnu: r-genomicinteractions: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.36.0.

Change-Id: I285ad15b9019c128b78bf0f42158f1275b0e3ee0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3d30484b1c
gnu: r-interactionset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.30.0.

Change-Id: I03fd7532d9f32550f50a31c42f32ac2f23dcf12f
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89937f497b
gnu: r-riboseqr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.36.0.

Change-Id: I2a1c843c0174fe058373d80e7a5fc1ecb301d900
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a44c944971
gnu: r-riboprofiling: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.32.0.

Change-Id: I226116cdc9408f294d4baca51b341e97a6a99e84
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
c7f6a7e802
gnu: r-chipcomp: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.32.0.

Change-Id: I2229de3fc55e54de3a2157e7210ae2981fe0e5f0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89f04f09de
gnu: r-bayseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.0.

Change-Id: I45768d7f3f6197834df60816697c425166ba49ac
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
11b594314a
gnu: r-qdnaseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.38.0.

Change-Id: I057ba767886780632acb14af13402ce00c1775cd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
af7177b379
gnu: r-cghbase: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.62.0.

Change-Id: Ib7b8ca1ee0c5ffe5831f92b4b26507e53da5a3a4
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbd1bdf433
gnu: r-marray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.80.0.

Change-Id: I90a32ab6abf3dac1335822e87aa1b0d123ee3f6b
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
56b23251f2
gnu: r-matrixgenerics: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.14.0.

Change-Id: I1160b591dd0d35a3eaeafb4601ee446aa7eb1308
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
88a4c1ef40
gnu: r-chippeakanno: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.0.

Change-Id: Ic006e5393f6b058daf5b27eb2682dc85c50557f8
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
995fd0fb69
gnu: r-pepsnmr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.20.0.

Change-Id: Ibe357d5e6d70209d0d9efb8828133d07606bf3ca
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e42bd79949
gnu: r-ggtreeextra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.12.0.

Change-Id: Ia904f7aef5cbb322bb22b440356f341dcdc7f29a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e466895bcb
gnu: r-graph: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.80.0.

Change-Id: I1a81002cebc1a57cfcba4f99ce26ead8fa2bccf5
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
413ebda52e
gnu: r-multibac: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.12.0.

Change-Id: I4c151b28ffb076846d98156fcdc15a49de34c6e3
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e648d5ab5a
gnu: r-mbkmeans: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.18.0.

Change-Id: Ia8808189503731978f7a6bc1e38e08b2517cbb77
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbf6c8c353
gnu: r-mbecs: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.6.0.
[propagated-inputs]: Remove r-markdown.

Change-Id: I13cb50d3c4dba5eb9f923117b1537d77bce9cc16
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f76b1ecf16
gnu: r-diffbind: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.12.0.

Change-Id: Ib2ca5f8fc3e6d360ac2907ee8a35b7e0ab34251a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
41219277e1
gnu: r-greylistchip: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.34.0.

Change-Id: I9f10a21502160eceb32cbc65c3d98c462062d4a7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
41a5c3f69a
gnu: r-apeglm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.24.0.

Change-Id: Iefd5a26f065763ad3bd7d9f73f4407f65a502888
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
79416c905f
gnu: r-apcomplex: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.68.0.

Change-Id: I48bd988a0977d873c59eb80bae2d09d349579cf4
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
9b9726239a
gnu: r-qvalue: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.34.0.

Change-Id: Ibc6f25bf2dcee3d98845fffd456ea923f853fd2a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
721c52eca7
gnu: r-quantsmooth: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.68.0.

Change-Id: I955f492df4f890f4ba6edb046487818e0d7e49d5
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
1f012cc06b
gnu: r-qfeatures: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.12.0.

Change-Id: I8bde97f0af1defc7e476f0d015bcc091f1efbecc
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
ec76b47df3
gnu: r-oligo: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.66.0.

Change-Id: Ia6630f2cd201f51fba03c6c6bea896169f38382a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
2b07d57f02
gnu: r-oligoclasses: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.64.0.

Change-Id: I660731bdd916015aa1bfb232de16ed501241f0d7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
2b9d304070
gnu: r-geneplotter: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.80.0.
[native-inputs]: Add r-knitr.

Change-Id: I77172aca93197a61a72898347532c998c58c802a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
41340588c8
gnu: r-zellkonverter: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.0.

Change-Id: Iccc4df8e474867f3318c07d1db1c645ef61816b3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c994a043c5
gnu: r-zlibbioc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.0.

Change-Id: I1f2b8d76ff55e094c184ff964600a7fb6d5b0df7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
299fd237c3
gnu: r-xvector: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.42.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: If2e4d2d2fe9c0f5efe26761a53b17c7d248aa4f6
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e6a4b0975
gnu: r-xmapbridge: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.60.0.

Change-Id: Id2c463f2b6a6a0d9554e6454ed2ed8cb21037fb3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e41fdf824
gnu: r-xina: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.20.0.

Change-Id: I9160afa32304721708ed37549c508b127b9b6a13
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
505e9ca855
gnu: r-vsn: Update to 3.70.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.70.0.

Change-Id: Ie8fdb7098eac529621139e22ffe57f6577fa0786
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
a497dbaa05
gnu: r-rgreat: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.4.0.

Change-Id: Iae44d5a6304db5fcc2590dc30b44cec74a5d89a1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
34c65d6f66
gnu: r-mixomics: Update to 6.26.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.26.0.

Change-Id: Id18c555d56cace915eaaef2a88107cfd4865f846
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
44d9185cfb
gnu: r-motifstack: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.46.0.
[arguments]: Simplify.

Change-Id: I1def6688307ae3cda991ab1349b6797d36c0e942
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
1eb852ff06
gnu: r-cghcall: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.64.0.

Change-Id: Ia1280ca4acbd79f1ab0ee3e902d6aec3d5b1c682
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
246eac46a8
gnu: r-multtest: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.58.0.

Change-Id: Ibfc1631dcbc9d0bfb2b89b0f92c34132dbc8f77f
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
01365740ea
gnu: r-variantannotation: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: If1ef81366022c829b2510435412bd16586401ae3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
52922eac72
gnu: r-tximport: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.30.0.

Change-Id: Ica833c44870a941e780a10e8f72ba6bb80d51c87
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
b341a01aea
gnu: r-topgo: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.54.0.

Change-Id: Ie001a348300c3ba353e51e6ae35619f6f20608b9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
0b23c3e384
gnu: r-systempiper: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.8.0.

Change-Id: I6efc8605f7b6d19090ef7f538a455c8155783a8d
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
972c874418
gnu: r-sva: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.50.0.

Change-Id: I98ed4d820507efde8901413da1b9edd2df026aa9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c8df5d8f95
gnu: r-survcomp: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.52.0.

Change-Id: I4a655fc134a6300d0783682be17b9a9b17ea073b
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
c123daea71
gnu: r-summarizedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.32.0.

Change-Id: Ifa23d01efcdb3b76858715b8e3919a9ceb56a9c1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
3527647b1e
gnu: r-structuralvariantannotation: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.18.0.

Change-Id: Iee4a06a6c0f22ff0b88a583210968a6a752ff2df
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
05062b3a92
gnu: r-stringdb: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.0.

Change-Id: If98b068a6f09036fa4cadbba3569ac24d242d43c
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
8ea882bb48
gnu: r-stager: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.24.0.

Change-Id: I94dfc44a5437e7bcd4c8b6e258ef62cf7ce2515a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
a78f026f27
gnu: r-spectra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.12.0.
[propagated-inputs]: Add r-metabocoreutils.

Change-Id: I6dcde0647e06d2a051b809c2b9e7cb659ce8733a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
5e36fcc1e6
gnu: r-slingshot: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.10.0.

Change-Id: I827a2ba68caa4a930c29858dcd2a3840449d1c91
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
894a959520
gnu: r-scds: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.18.0.

Change-Id: I6388da9169fd6e93759579b7e378d9037a2fa2c8
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
d970fa6a92
gnu: r-trajectoryutils: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.0.

Change-Id: I55d3dd66077721eba7b5de5c6f4d8e8dce18243c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
eafe0f33e5
gnu: r-transcriptr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.30.0.

Change-Id: I63bdde62a0afe545c5538b8dc8c84c5b220d659b
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
3ccfda4799
gnu: r-trackviewer: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.0.

Change-Id: I7e13ad40fef06848d4002875c6640406f0e2c8cd
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
4a0bfc3629
gnu: r-tkwidgets: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.80.0.

Change-Id: I3164946bdf1665872b5d96acdaa0b53103bb9440
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
3302942017
gnu: r-tcgautils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.0.

Change-Id: I032c2f7fe6dcd40ade4ed736052e1caad79610e6
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
a6acba4a2d
gnu: r-singscore: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.22.0.

Change-Id: Iad1bd17ce29ecb3118a4998ab53c3deebbe3354d
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
f2d4fb112b
gnu: r-simplifyenrichment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.12.0.

Change-Id: I3ad0ec6e0e990048d1847e5915d9a63b7efc1db4
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
fecb7da1db
gnu: r-shortread: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.60.0.

Change-Id: I130c2f6de4a31c639da2cbddc5d3dd9ef35e3dfb
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
19cc337424
gnu: r-shinymethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.38.0.

Change-Id: I84bf96c91ec31578af9522ccd69693c91d8ac72f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0c949e4684
gnu: r-sesame: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.20.0.

Change-Id: I9ab2fb2cf0a8e65308820b0e93ed6a9c74fd11e5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
8cc5dee008
gnu: r-seqpattern: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.34.0.

Change-Id: Iaca71f59f8399e2fe27ab545b128dbc16097ac72
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
08fcb9423d
gnu: r-seqlogo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.68.0.

Change-Id: Ie71132c07d393633dfc20b2dd43f29621627a615
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
61e1d2efca
gnu: r-seqarray: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.0.

Change-Id: I0efc86ef3f9c0a798ee7cb4434092bea8aa143c5
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
5fd85a62e0
gnu: r-scry: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.14.0.

Change-Id: I3138f53e6133f96ecd1efb0ccbc002a53d04b6ab
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
f5e93e8bed
gnu: r-scmap: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.24.0.

Change-Id: I894d2be7b665d64a3278027b93d36910dcc59114
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bb24565a9f
gnu: r-scdblfinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.16.0.

Change-Id: I9978ed4ba4de89ac1a97a4606498eb0bffe4b47c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
96c6e377e6
gnu: r-scannotatr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.8.0.

Change-Id: Ic38511c26633c146aeab43e51420f8cb66d81557
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
bf3e9b2287
gnu: r-saturn: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.10.0.

Change-Id: I2d79ca29c9fe303fef07d046fab802932f62ef6c
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0f43f41994
gnu: r-rtracklayer: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.62.0.

Change-Id: Icc6a2074292ad9426cb9eb2a50c31b307a724202
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
d08d8fa8a7
gnu: r-rtcgatoolbox: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.32.1.
[propagated-inputs]: Remove r-rcircos.

Change-Id: I1676a7c25e97fa990e855c2d26ecd268b08c8d94
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
2531eac414
gnu: r-rtcga: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.32.0.

Change-Id: I34d49096aee9329730b009209d60471f0b97ce1a
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
1e454c32d7
gnu: r-rsamtools: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.18.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: I5276250da7f390358cb62e3934aedf61b4a36d67
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
68bdc0a860
gnu: r-rhdf5filters: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.0.
[native-inputs]: Remove r-biocstyle and r-rmarkdown.

Change-Id: I14e7f0e2c5986c35b9c6ca36dcb3f4127cf348aa
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
0e159537dd
gnu: r-rhdf5: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I6423f6b8a92b2053039c2af7f52cbfe047d9f75f
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
31d236ad8e
gnu: r-regioner: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.34.0.

Change-Id: I1b8b0d031065a2462d9a812a2ceccf58bf31ff37
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
2023-11-03 22:49:17 +01:00
Ricardo Wurmus
45b4cdb52e
gnu: r-rbgl: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
42504ecfc8
gnu: r-piano: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
2023-11-03 22:49:16 +01:00