Ricardo Wurmus
0150529188
gnu: Remove r-wavetiling.
...
This package had been removed from Bioconductor since release 3.12.
* gnu/packages/bioconductor.scm (r-wavetiling): Remove variable.
Change-Id: I5eb624d975f0eb170b263266b144eacf11944580
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
abaca151b2
gnu: r-mpo-db: Include HPO sqlite database.
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* gnu/packages/bioconductor.scm (r-mpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add MPO.sqlite.
Change-Id: Ic7228322b89ce78a85a9bd5ffbd985ccd906d268
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
b30127052e
gnu: r-readwriter: Update to 0.3.2-1.12d32cb.
...
* gnu/packages/bioinformatics.scm (r-readwriter): Update to 0.3.2-1.12d32cb.
Change-Id: I412190ce94bee4e7b5fce27db7ef8a72188e74f4
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
c66c66ee3f
gnu: r-hpo-db: Include HPO sqlite database.
...
* gnu/packages/bioconductor.scm (r-hpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add HPO.sqlite.
Change-Id: Ie01605ef2531d992fb85c07bae5cfaabda626ea6
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
a938342899
gnu: r-rhdf5lib: Adjust modifications to Makevars.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Adjust patch.
Change-Id: Iaef3d2d80c22de1c2a0b64e7c13f5fa3b8e5719d
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
c82c9c8090
gnu: r-phyloseq: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.46.0.
Change-Id: Id11b5e913529ac8efce0d046168f4a9dbe0dbabd
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
1c3e8ab395
gnu: r-tximeta: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.0.
Change-Id: I8d9c5d01efc8f6c64290cdfdd193d95cd1da9152
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
270d7e1079
gnu: r-tricycle: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.10.0.
Change-Id: I72a9e1140c17ce8605bfe6e83cc290eb1ae2fad2
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
9ee38f4ee6
gnu: r-tcgabiolinks: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.0.
Change-Id: If7e571bfa6454bfa94dd395606575391dc506ecd
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
28480926a5
gnu: r-biscuiteer: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.16.0.
Change-Id: Ib6cffbbeedfe87932acfcbfb2b789b4c92a9bf81
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
53ebbff56c
gnu: r-omnipathr: Update to 3.10.1.
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* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.10.1.
[propagated-inputs]: Add r-lubridate and r-stringi.
Change-Id: Ia18b66848cd6996dfdc551bf4b182bb5ac3e17a8
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
41a4f01473
gnu: r-omicade4: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.42.0.
Change-Id: I4369e5721116bf73f096ee39a516ada94c348872
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
73efb254d8
gnu: r-dmrseq: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.0.
Change-Id: I738c2fb7e0fa3e816d3767f854b8f9ed77425591
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
f6e56299e7
gnu: r-dada2: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.30.0.
Change-Id: I0955c3a61b4d81cd6809e2eb287d8acfcccfb789
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
407e9b2710
gnu: r-bsseq: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.38.0.
Change-Id: Ie31f0b5c726da98a0caa4c658a5c62c1a5f40eaa
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
69d7d7a6db
gnu: r-biotmle: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.26.0.
Change-Id: Ied1d1e649fba277aa724040af31334f664d2debd
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
9f2c8b711b
gnu: r-biotip: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.16.0.
Change-Id: I73503554b0271e5fe950c6da367b4893972f27e9
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
a7d1b8832a
gnu: r-bioqc: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.30.0.
Change-Id: I0b5fd7cac1283a7f12a1221ad453eb56767e8b90
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
ee259a9ad9
gnu: r-bionetstat: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.22.0.
Change-Id: I92f2ebef0b65b947a719bdd1008f07ce279263a4
2023-11-03 22:49:28 +01:00
Ricardo Wurmus
b0190a7d5c
gnu: r-bionet: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.62.0.
Change-Id: I0712a4ba67c27b32d6666e91d9515f0299e61848
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
63f3a845ea
gnu: r-bionero: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.0.
Change-Id: I396a37dd28571a471b45d4d8aca6ce40a1cbd384
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
4ccceb31b9
gnu: r-biomvcclass: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.70.0.
Change-Id: I0c6214669ec284d314eb7dc90270558934070e4b
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b4e803a8a9
gnu: r-mvcclass: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.76.0.
Change-Id: I6e7fa851c804009ae41a955b117d95b33fd1b2f0
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
c91a1a8bc8
gnu: r-biomformat: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.30.0.
Change-Id: I661d11f81a0dedbc8381b5ba1806643b5ff52aa6
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
2b4dcd4a7b
gnu: r-biodb: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.10.0.
Change-Id: If1d14855b2bf134741c54c0a51daefdf2b80a49f
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
9480ea5046
gnu: r-biocthis: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.12.0.
Change-Id: I8400ebfd178f916488e022152e75db59f05994e6
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
327c9bd7c8
gnu: r-basilisk: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.0.
Change-Id: I86f5306de138eb1fedffbae65c14f9acd504c86c
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b5527cc3c6
gnu: r-basilisk-utils: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.0.
Change-Id: I6113042a10770ee50e4ef997ee41fe109f917885
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b2389dcfc1
gnu: r-dir-expiry: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.10.0.
Change-Id: I1081ec981a52a51a351d98e5079f8fd4bcc399d0
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d5026a9e16
gnu: r-genetclassifier: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.42.0.
Change-Id: I323ca2d408c640b05c9d845570ee7af28616cce2
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
31fef7c331
gnu: r-minet: Update to 3.60.0.
...
* gnu/packages/bioconductor.scm (r-minet): Update to 3.60.0.
Change-Id: I4944d2e34aacc6d3ba8c5a2d2176ecf7b33ca6b8
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
ae127ddf0d
gnu: r-biobtreer: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.14.0.
Change-Id: Icf0458c6931237a405178361778a68c1a068337c
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d40b4c5063
gnu: r-bgeedb: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.28.0.
Change-Id: I558f36065a9a751710843f21c6089231309705ca
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
38f88c84bf
gnu: r-bgeecall: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.18.1.
Change-Id: I5db747786c63f248dec01879e41a9837c94d6d6c
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
58661d1d54
gnu: r-beclear: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.18.0.
Change-Id: Ia52d2072c95c4ff68cabe22cd6f9da8f3f7833b3
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
6ddf9ed610
gnu: r-megadepth: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.12.0.
Change-Id: Ia8424334f3183442a8e7ffb21ba664b93f6342a3
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
9d0492c750
gnu: r-ballgown: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.34.0.
Change-Id: Ice69c2be8df89cb103e73de328ac6eb5919f0502
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
7e36e3ed55
gnu: r-guitar: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.18.0.
Change-Id: I2cd39de6e1fedbc3ed9a137373d6836e930296f2
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
0c881be497
gnu: r-chromstar: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.28.0.
Change-Id: I48a305a00b1fe7c89ca4f9700ebe6f65a6265080
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
d775b141cf
gnu: r-snpstats: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.52.0.
Change-Id: Ia770e5b05a7998d552b8ccb5386ddc1ad6722217
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
3b0e948493
gnu: r-snprelate: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.0.
Change-Id: I79ab3d448ab4b10a97d9c9d36b3b849a7c491508
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
bbe5704c17
gnu: r-snapcgh: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.72.0.
Change-Id: I7b2adbcb45461b5dc4f8248f92bfbda5f145d906
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
6b8c604e48
gnu: r-pathview: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.42.0.
Change-Id: I56a1425210667cc9b1ee41d20b9a71a749f6ff91
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
740e7ff51b
gnu: r-parody: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-parody): Update to 1.60.0.
Change-Id: I409588b32e582c0c6cd631d56a92ca430e2429d4
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
e9618ab210
gnu: r-ldblock: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.32.0.
Change-Id: I4183a3b48e050120ffb1e5cbba3894a5637ad1cc
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
9f139605ef
gnu: r-kegggraph: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.62.0.
Change-Id: Iadaa3580a5755ca5e611d980241191c4ae8b9452
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
b6288f949f
gnu: r-gwastools: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.48.0.
[native-inputs]: Add r-knitr.
Change-Id: I0544357b6f954e4812d1cdb983e12ed34f83b0d1
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
11300bd9ee
gnu: r-gwascat: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.34.0.
Change-Id: I3ae4066f1e36e30cecdf15cb9a5bfb469f0d6b49
2023-11-03 22:49:27 +01:00
Ricardo Wurmus
3e5e4bf311
gnu: r-gviz: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.0.
Change-Id: Ib7b7f039dffd4f25731a4be3edfa6ecd293ceeff
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f52a6fe0f1
gnu: r-ggbio: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.50.0.
Change-Id: I242df48dce620f327205d7f47bebfba0eae7d0c8
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
7af02a2c1d
gnu: r-erma: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-erma): Update to 1.18.0.
Change-Id: I4f5993a1b80fc10b2eceb3177402c5b577a72855
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
bfd81d4846
gnu: r-catalyst: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.0.
[propagated-inputs]: Remove r-magrittr.
Change-Id: I2026d88617251a7dd5b87e57d7891852a0ff84cf
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
fd9c0e4167
gnu: r-msmstests: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.40.0.
Change-Id: Ia7f0d3e6684411cda2ab93c173b3195fa8a55348
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
bf8406c30a
gnu: r-msmseda: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.40.0.
Change-Id: Idc5314c04de4e03047d5fa9faac907a2ab8d527d
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f2ab2bba68
gnu: r-biocio: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.12.0.
Change-Id: Ie6e5aee0c1a0c122f574d801e3268b460f89be2f
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
456beea62b
gnu: r-msfeatures: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.10.0.
Change-Id: I47be1fd6789a9cc386bc394e5fe0724156119ec9
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
0708efd724
gnu: r-mscoreutils: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.0.
Change-Id: Idbefebedc36bb19f5fe3549c9c3fc1e4056bf4fd
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
8fbc9cecda
gnu: r-delayedmatrixstats: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.24.0.
[propagated-inputs]: Remove r-matrixstats.
Change-Id: I212a19d1938a676f88c0371dc838bdfbea0ba814
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
372d1079d4
gnu: r-spatialexperiment: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.12.0.
[propagated-inputs]: Remove r-dropletutils.
Change-Id: I0df7aba48690c8472dee732b2aa21c9a83cb1e68
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
fb51c8df4f
gnu: r-sparsematrixstats: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.14.0.
Change-Id: Ia8812ca08d97737c1542afc80ce31ae29e673820
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d797b2bb6f
gnu: r-scran: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.0.
Change-Id: Ic22fe78b4cd043f42b6e6cf8cf1d18772f7cfe63
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
051831dedc
gnu: r-scater: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.0.
[propagated-inputs]: Remove r-delayedmatrixstats and r-densvis; add r-matrixgenerics.
Change-Id: I7efb9c918fbc52bd0f3e184b928118cf59901d30
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
9cd2ed0580
gnu: r-scuttle: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.12.0.
Change-Id: Ia827e7c0cc34e84a82d844909f186eb8acecb604
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
71c77b8a95
gnu: r-singler: Update to 2.4.0.
...
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.0.
Change-Id: I1d3dd6343c3b604431684774075815d0454dbe6f
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
1e98a630ec
gnu: r-singlecellexperiment: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.24.0.
Change-Id: I22ffd8659aab63f3abd3ace3e874c8f83df2eeff
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
f936bf66fc
gnu: r-chromvar: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.24.0.
Change-Id: I90826fc26d2ca866e3502b275b92b77ea091745e
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
c5068f9911
gnu: r-motifmatchr: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.24.0.
Change-Id: Ic656b84be047307728609f7a80b4077b1c638d4c
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
2458396f31
gnu: r-maftools: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.18.0.
Change-Id: I86ad6178d842ab3c93281bc4795a76abeb3c1e35
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
eff0371eed
gnu: r-tfbstools: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.40.0.
Change-Id: I5a3422fbd518ba681184e1ac36e3c1d95de07059
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
3e271e4d71
gnu: r-cner: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-cner): Update to 1.38.0.
Change-Id: I8907fcc16b67330e76c5d3bd050d594f07924e8a
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d8aa22981d
gnu: r-beaddatapackr: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.54.0.
Change-Id: I231314cbe3d77920611221f8d234fffe123e7a26
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
74479eb3af
gnu: r-beadarraysnp: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.68.0.
Change-Id: I699cd1b68d682e2994b360e226c147674efe440d
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
87a27ee369
gnu: r-beadarray: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.52.0.
Change-Id: Id9bf32ed5c1ce7ab77eda56e2c05dacc6ce987dd
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
0223873ff9
gnu: r-beachmat: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.0.
[propagated-inputs]: Add r-sparsearray.
Change-Id: I7ef74dcb5778d994f9a25616daa8c43ce97f2a40
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d7ceedddff
gnu: r-rhdf5lib: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.0.
Change-Id: Iedc6746f91520826543dd3576591fb5d557bee8b
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
a9a7f0e6d5
gnu: r-hdf5array: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.0.
Change-Id: Id4e3654018ace7d0fae1d242a592a5bdb0064354
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
9940cd5a87
gnu: r-hitc: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.46.0.
Change-Id: I0afa4f9da8a94712fe851268ea94af25db058a8c
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
ac96b72ebf
gnu: r-fithic: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.28.0.
Change-Id: I0a17ee5963458b4aa80d35eab741693f68881793
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
d2819bd479
gnu: r-fishpond: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.8.0.
Change-Id: If7bdb7c7c7fc1cb1b0350b0b95813bcb48e2665b
2023-11-03 22:49:26 +01:00
Ricardo Wurmus
c4aeeb8e37
gnu: r-rgraphviz: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.46.0.
Change-Id: Ic983783baa291a4842fbed292c090a0f31226518
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
7d25e2b5c3
gnu: r-s4vectors: Update to 0.40.1.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.1.
Change-Id: I927dc9c82cd0b8c3db90c4e7c5b6eefeddbb68dc
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
43972af221
gnu: r-s4arrays: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.2.0.
Change-Id: Ib9b6491f8047d9c8a446f1232e08a1dec7ca740b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
dbc5c312ae
gnu: r-preprocesscore: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.64.0.
Change-Id: Ifb7fdf7c4d74129500a74d5155b64b065e564136
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
2810ee4b0d
gnu: r-icens: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-icens): Update to 1.74.0.
Change-Id: If871b12a0d1076b2cc2f16ea64a87f1086da137e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
b26b8e521b
gnu: r-m3c: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.24.0.
Change-Id: Ibabb639726245ecffc51ac39fb0fa9636e9bc404
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
75e6f86cc0
gnu: r-pcatools: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.14.0.
Change-Id: I35eac63ee233c103627cea0d80842c8b7db1c576
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
251e2665cf
gnu: r-biodist: Update to 1.74.0.
...
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.74.0.
Change-Id: Ia446e4991c1955b439b2a9b40d7a22c014c5732c
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
78a082720a
gnu: r-biocworkflowtools: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.28.0.
Change-Id: I23ba98e1feb48187df231b8174217b4e7a6fc5cd
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
c4f3bc06f5
gnu: r-biocset: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.0.
Change-Id: I8c37bdf0eaad27d5c3010aedb400541d3b925183
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
5890114ab6
gnu: r-biocpkgtools: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.20.0.
Change-Id: I4a19909e48efb3602bbdf346e860cd5fc1de5ced
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
b972c4f697
gnu: r-biocor: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.26.0.
Change-Id: I735115d213344ec92d6e7b37bbabc2f372a3e6ba
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
10cc2092a0
gnu: r-bioconcotk: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.0.
Change-Id: I241228a90ff960d98534248e5f49a69acf1fb39b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
18b06daa50
gnu: r-multiassayexperiment: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.28.0.
Change-Id: I4b8c41053ac624832377a285f5002724e409b4da
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
15961e132d
gnu: r-grohmm: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.36.0.
Change-Id: I692b58aace86c5f69ba1645ebb95113f0a846409
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
2b79447123
gnu: r-experimenthub: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.10.0.
Change-Id: I1a47361ad688a9f3219a8d9e6ff2531728129177
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
7943457076
gnu: r-biocviews: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.70.0.
Change-Id: Ic8cf3a0f1e8767812e951dbfb5d12960726712f6
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
f9dcaf2f11
gnu: r-biocstyle: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.30.0.
Change-Id: I4bcb716982fa5eaea2e9aa34624bf4145011d20b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
cb0e6b7711
gnu: r-biocgraph: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.64.0.
Change-Id: Ic9aa7212fa29c9ee691219d915de532b63fc6a37
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
ee1f2a995f
gnu: r-bioccheck: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.0.
[propagated-inputs]: Add r-biocbaseutils and r-callr.
Change-Id: I98e6b4ad7e3c32597435a3656adcd1cf10d3b019
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
e477608856
gnu: r-biocbaseutils: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.4.0.
Change-Id: Id934591d48281066c90c36fdb9c0ef715188f8fd
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
92a1f44f6d
gnu: r-ebarrays: Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.66.0.
Change-Id: Ib13ff4d7edabeba4c3250337f0d23629b9426328
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
72ad29f730
gnu: r-reactomepa: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.46.0.
Change-Id: I543add10e14ad634795e29f6db2e07a518878108
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
26e71b7a72
gnu: r-graphite: Update to 1.48.0.
...
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.48.0.
Change-Id: Ifcaed9653072ac86fbda18ac7dcf3686dd66116e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
026bc372d8
gnu: r-biobroom: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.34.0.
Change-Id: Iba62b38441f0127acb0880105dc4fb174238412b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
c0beba2647
gnu: r-bioassayr: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.40.0.
Change-Id: Idfd958f0ea6e3e73c83a2f67b59c2f600c4de109
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
be0482d40f
gnu: r-fmcsr: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.44.0.
Change-Id: Ie4da389382e4d3836342be872a88dcbeb69f59ed
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
dadf10ed8b
gnu: r-chemminer: Update to 3.54.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.54.0.
Change-Id: I43836d9323e3034c02a9864deddaf4a854a8e909
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
8d14b99d75
gnu: r-chemmineob: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.40.0.
Change-Id: Ic7ab360eafea01ea0f7f586b588120c468d8ffd6
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
df794c84f9
gnu: r-biggr: Update to 1.38.0.
...
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.38.0.
Change-Id: I2dd8a24f1f73782ab888af0f89654e0ef7302b3e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
0f8cccb01f
gnu: r-hyperdraw: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.54.0.
Change-Id: I0d49e7993e9225d409e863ddba3f6f832b3f95aa
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
59e55fc39e
gnu: r-hypergraph: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.74.0.
Change-Id: I7053e0b906422526bc57220fc63fde8700a40524
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
0fc5a510b5
gnu: r-hybridmtest: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.46.0.
Change-Id: If225eb7af55746651921d924a10ee95ee9b071b8
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
772c6fb840
gnu: r-rsbml: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.60.0.
Change-Id: Ie1f3bc87e1c4c5df2fece70aa0a72133e038f347
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
99ff99c9eb
gnu: r-bifet: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.22.0.
Change-Id: I8207d5945dcbba850610e1ce6b77f834c927fa2c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a70ca6a613
gnu: r-bicare: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.60.0.
Change-Id: I231f0c6f24b62a9bf999b39af003156cd1578289
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
6f38f25816
gnu: r-bhc: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.54.0.
Change-Id: I52b46125e0cb912b4e27d4198a676d311a5c5eb9
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
bab03df210
gnu: r-bgx: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.0.
Change-Id: Idcab4760b9e96d74f96c0f9a09c945d9d960e598
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
2fa21de9c2
gnu: r-acde: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-acde): Update to 1.32.0.
Change-Id: I2f7fd79361be6326b307fbb7d3ef4c7bf6a585ed
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
84de1e4ade
gnu: r-acme: Update to 2.58.0.
...
* gnu/packages/bioconductor.scm (r-acme): Update to 2.58.0.
Change-Id: Ife3005c7a63743eed0f86c5037a06d9e38a14097
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
85060391ba
gnu: r-acgh: Update to 1.80.0.
...
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.80.0.
Change-Id: Ic9fb3c4309c733b49f6af9e37ed80a519bdf9357
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
865e3e75a8
gnu: r-ace: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-ace): Update to 1.20.0.
Change-Id: Ifc01abdde81766045c6f4e47df49f45785f59f94
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
45cbc2372e
gnu: r-universalmotif: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.20.0.
Change-Id: I72bb6459df1e04875888fa9f77b726ec54055ca3
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
642f470df1
gnu: r-unifiedwmwqpcr: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.38.0.
Change-Id: Iee0e28569f7be1940b6a3dbf167dc916c16833df
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
428f4cb50b
gnu: r-ucell: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.1.
Change-Id: I2bf8868b8d1f7fa1bdedfc6f999e586a869b9e1e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3ff2e070fe
gnu: r-htqpcr: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.56.0.
Change-Id: Ib8428af779a98690de7304225da31b7697d1fa45
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3df0e523f2
gnu: r-variancepartition: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.1.
[propagated-inputs]: Remove r-doparallel, r-foreach, and r-progress; add r-corpcor and
r-fancova.
Change-Id: Iccea2f1b1929d23b821142aebe121bc09ff62b44
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
75cac71be2
gnu: r-variantfiltering: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.38.0.
Change-Id: I598d983c5d7e0f45da04c14f2fc6453e6ef88d98
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3c93fab37f
gnu: r-tilingarray: Update to 1.80.0.
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* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.80.0.
Change-Id: I78c5d57af6117ce78232ebfa065416fd7d2a6cc4
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
43ea1c324a
gnu: r-wavcluster: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.36.0.
Change-Id: I24818db21be07d1f5476dc5abea2b067d9b6623c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
fb6da71504
gnu: r-reqon: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.48.0.
Change-Id: Idd4e403b3ed3ca84cad80657a46fd4c9e0c1582d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b22318e0af
gnu: r-seqbias: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.50.0.
[propagated-inputs]: Add r-zlibbioc.
Change-Id: Ibf4e49bffefec0eb6a1e4e6d1c29383c37f8bbfb
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a36fba9d1b
gnu: r-bigmelon: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.28.0.
Change-Id: Iaf3adc3d1d05923bd031c52c03d1fc7a76955720
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
86bc7de016
gnu: r-gdsfmt: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.38.0.
Change-Id: If6494e1a21fcde1e63ace19746346368234a8f6b
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b90a54605a
gnu: r-watermelon: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.8.0.
Change-Id: Iefca41487698e294fb369f4016f67fb147464e72
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
ef52ea9c6d
gnu: r-roc: Update to 1.78.0.
...
* gnu/packages/bioconductor.scm (r-roc): Update to 1.78.0.
Change-Id: I54dc89ba0e9bc6c3274da7af2e43191c2a6f9e2f
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5fa4d39b7a
gnu: r-genie3: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.24.0.
Change-Id: I5fd664aecec4037793a190326936c11316499f8d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
8ef81e22b3
gnu: r-circrnaprofiler: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.16.0.
Change-Id: I31457048a3c1659b0765ae1732f492567c7397dd
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5e268c72a4
gnu: r-cicero: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.20.0.
Change-Id: I23c4a69ca3b7b97811fb4b919646a2d998cb931e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
d73af33e49
gnu: r-chicago: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.30.0.
Change-Id: Id395b5593684d98ddfe9af7a65fb03c2be46d43c
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
93322f6240
gnu: r-depecher: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.18.0.
[propagated-inputs]: Add r-collapse.
Change-Id: I24ec77ec5ec4f85e21eb00de3494106876c0ec40
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
a32a12ec27
gnu: r-flowsom: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.10.0.
Change-Id: I18e214006f6c4ae17d6ddc53a744e9d7b1747260
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
c9533f5df9
gnu: r-cytoml: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.14.0.
Change-Id: Ibfe47c6d75d500b0f89fd1f8abf3d670035136d3
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0d5d1163d7
gnu: r-opencyto: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.14.0.
Change-Id: I888c78a43379b91be3ce60e761e6b1b199fcf86d
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
127590d8ad
gnu: r-flowstats: Update to 4.14.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.0.
[propagated-inputs]: Add r-clue.
Change-Id: Ib1c5eb4d5122bf25ca0e68d4404777cc8406526a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d97e582d89
gnu: r-flowworkspace: Update to 4.14.0.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.0.
Change-Id: I97248860f6b887d00787e22e9ac873123ba1f2c2
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e6188fe703
gnu: r-rprotobuflib: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.0.
Change-Id: I91320a80b921f1dc7b9fb858465328be105170aa
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ca1998e47d
gnu: r-flowclust: Update to 3.40.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.40.0.
Change-Id: I50c0766d93b13489adfe800d2d06b11545bfa43b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
be37da9b54
gnu: r-flowviz: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.66.0.
Change-Id: I118ccc0471534316abff95cd1ab9eabd859f6831
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
32a16be414
gnu: r-ggcyto: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.30.0.
Change-Id: I961a281d462a3e4105b58ba692590812fe375a3f
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
451730851d
gnu: r-ncdfflow: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.48.0.
Change-Id: Ifa2ccc14f1f4b23fe582f31c219eac0bb5d0b9db
2023-11-03 22:49:23 +01:00
