gnu: Add r-mpo-db.

* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
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Ricardo Wurmus 2023-11-03 15:46:44 +01:00
parent 48bf30e3b1
commit 6304d3cce6
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@ -98,6 +98,39 @@ It retrieves this data from the Genome Aggregation Database
(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
(license license:artistic2.0)))
(define-public r-mpo-db
(package
(name "r-mpo-db")
(version "0.99.7")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MPO.db" version
'annotation))
(sha256
(base32 "0x1rcikg189akbd71yh0p02482km9hry6i69s2srdf5mlgqficvl"))))
(properties `((upstream-name . "MPO.db")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi r-annotationhub r-biocfilecache r-dbi))
(native-inputs (list r-knitr))
(home-page "https://github.com/YuLab-SMU/MPO.db")
(synopsis "set of annotation maps describing the Mouse Phenotype Ontology")
(description
"This is the human disease ontology R package HDO.db, which provides the
semantic relationship between human diseases. Relying on the DOSE and
GO@code{SemSim} packages, this package can carry out disease enrichment and
semantic similarity analyses. Many biological studies are achieved through
mouse models, and a large number of data indicate the association between
genotypes and phenotypes or diseases. The study of model organisms can be
transformed into useful knowledge about normal human biology and disease to
facilitate treatment and early screening for diseases. Organism-specific
genotype-phenotypic associations can be applied to cross-species phenotypic
studies to clarify previously unknown phenotypic connections in other species.
Using the same principle to diseases can identify genetic associations and
even help to identify disease associations that are not obvious.")
(license license:artistic2.0)))
(define-public r-org-eck12-eg-db
(package
(name "r-org-eck12-eg-db")