gnu: Add r-mpo-db.
* gnu/packages/bioconductor.scm (r-mpo-db): New variable. Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
This commit is contained in:
parent
48bf30e3b1
commit
6304d3cce6
@ -98,6 +98,39 @@ It retrieves this data from the Genome Aggregation Database
|
||||
(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-mpo-db
|
||||
(package
|
||||
(name "r-mpo-db")
|
||||
(version "0.99.7")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "MPO.db" version
|
||||
'annotation))
|
||||
(sha256
|
||||
(base32 "0x1rcikg189akbd71yh0p02482km9hry6i69s2srdf5mlgqficvl"))))
|
||||
(properties `((upstream-name . "MPO.db")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
(list r-annotationdbi r-annotationhub r-biocfilecache r-dbi))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://github.com/YuLab-SMU/MPO.db")
|
||||
(synopsis "set of annotation maps describing the Mouse Phenotype Ontology")
|
||||
(description
|
||||
"This is the human disease ontology R package HDO.db, which provides the
|
||||
semantic relationship between human diseases. Relying on the DOSE and
|
||||
GO@code{SemSim} packages, this package can carry out disease enrichment and
|
||||
semantic similarity analyses. Many biological studies are achieved through
|
||||
mouse models, and a large number of data indicate the association between
|
||||
genotypes and phenotypes or diseases. The study of model organisms can be
|
||||
transformed into useful knowledge about normal human biology and disease to
|
||||
facilitate treatment and early screening for diseases. Organism-specific
|
||||
genotype-phenotypic associations can be applied to cross-species phenotypic
|
||||
studies to clarify previously unknown phenotypic connections in other species.
|
||||
Using the same principle to diseases can identify genetic associations and
|
||||
even help to identify disease associations that are not obvious.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-org-eck12-eg-db
|
||||
(package
|
||||
(name "r-org-eck12-eg-db")
|
||||
|
Loading…
Reference in New Issue
Block a user