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67244 Commits

Author SHA1 Message Date
Lars-Dominik Braun
bc82567b0b
gnu: Add r-syuzhet. 
* gnu/packages/cran.scm (r-syuzhet): New variable.
 2021-03-15 10:52:59 +01:00
Lars-Dominik Braun
d332c5c7f2
gnu: Add r-textshape. 
* gnu/packages/cran.scm (r-textshape): New variable.
 2021-03-15 10:52:58 +01:00
Lars-Dominik Braun
ed48898931
gnu: Add r-dtt. 
* gnu/packages/algebra.scm (r-dtt): New variable.
 2021-03-15 10:52:57 +01:00
Lars-Dominik Braun
4bc1707dba
gnu: Add r-mgsub. 
* gnu/packages/cran.scm (r-mgsub): New variable.
 2021-03-15 10:52:56 +01:00
Lars-Dominik Braun
ae807fdb37
gnu: Add r-qdapregex. 
* gnu/packages/cran.scm (r-qdapregex): New variable.
 2021-03-15 10:52:55 +01:00
Lars-Dominik Braun
c4e826bbd2
gnu: Add r-esc. 
* gnu/packages/statistics.scm (r-esc): New variable.
 2021-03-15 10:52:52 +01:00
Mark H Weaver
d059485257
gnu: unzip: Remove redundant and unused "unzip-symlink.patch". 
This is a followup to commit 31d289a475,
which added, but did not use, "unzip-symlink.patch", which is
redundant with the pre-existing "unzip-initialize-symlink-flag.patch".

* gnu/packages/patches/unzip-symlink.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-03-14 19:16:17 -04:00
Leo Famulari
b082ea9406
gnu: OpenSSL: Refer to the version number in a more robust way. 
* gnu/packages/tls.scm (openssl)[arguments]: Replace use of VERSION with
(PACKAGE-VERSION THIS-PACKAGE).
(openssl/fixed): Adjust accordingly.
 2021-03-14 16:33:12 -04:00
Leo Famulari
bb2427fa28
gnu: ImageMagick: Refer to the version number in a more robust way. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(imagemagick/fixed): Adjust accordingly.
 2021-03-14 16:33:12 -04:00
Leo Famulari
43cbb05f4b
gnu: libtiff: Refer to the version number in a more robust way. 
* gnu/packages/image.scm (libtiff)[arguments]: Replace use of VERSION
with (PACKAGE-VERSION THIS-PACKAGE).
(libtiff/fixed): Adjust accordingly.
 2021-03-14 16:33:08 -04:00
Leo Prikler
d4e29f3628
gnu: libhandy: Update to 1.2.0. 
* gnu/packages/gnome.scm (libhandy): Update to 1.2.0.
 2021-03-14 19:47:08 +01:00
Mathieu Othacehe
cbfcbb79df
ci: Support packages with multiple channels. 
This is a follow-up of 61a1165340. For packages
provided by external channels, package-channels procedure will return at least
two channels. Take it into account.

* gnu/ci.scm (cuirass-jobs): Fix channels subset argument.
 2021-03-14 19:43:35 +01:00
Eric Bavier
b76762a9b7
gnu: Update OnionShare to 2.3.1. 
* gnu/packages/tor.scm (onionshare-cli): New variable.
(onionshare): Inherit from onionshare-cli.
[arguments]: Add patch-tests and install-data phases.  Adjust check phase for
new tests.
[inputs]: Remove python-pycryptodome, python-nautilus, python-sip,
python-stem, and python-pyqt.  Add onionshare-cli, python-shiboken-2,
python-pyside-2, python-qrcode.
[description]: Use new upstream description.
 2021-03-14 13:24:22 -05:00
Eric Bavier
620206b680
gnu: python-eventlet: Add missing dependencies. 
* gnu/packages/python-xyz.scm (python-eventlet)[propagated-inputs]: Add
python-dnspython and python-monotonic.
 2021-03-14 13:24:22 -05:00
Eric Bavier
5a31eb7d35
gnu: Add python-flask-socketio. 
* gnu/packages/python-web.scm (python-flask-socketio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
078f3288e2
gnu: Add python-socketio. 
* gnu/packages/python-web.scm (python-socketio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
7164d2105a
gnu: Add python-engineio 
* gnu/packages/python-web.scm (python-engineio): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
af25357b7d
gnu: Add python-bidict. 
* gnu/packages/python-xyz.scm (python-bidict): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
30f5381487
gnu: Add python-sortedcollections. 
* gnu/packages/python-xyz.scm (python-sortedcollections): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
207aa62e6b
gnu: Add python-sphinx-autodoc-typehints. 
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints): New variable.
 2021-03-14 13:24:21 -05:00
Eric Bavier
b15720182e
gnu: Add python-sphobjinv. 
* gnu/packages/sphinx.scm (python-sphobjinv): New variable.
 2021-03-14 13:24:21 -05:00
Nicolas Goaziou
2babf7d831
gnu: pdfarranger: Update to 1.7.1. 
* gnu/packages/pdf.scm (pdfarranger): Update to 1.7.1.
 2021-03-14 19:16:55 +01:00
Efraim Flashner
e598556ee5
gnu: alacritty: Adjust to changes in the cargo-build-system. 
* gnu/packages/terminals.scm (alacritty)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Efraim Flashner
21ead0fc5b
gnu: newsboat: Adjust to changes in cargo-build-system. 
* gnu/packages/syndication.scm (newsboat)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Efraim Flashner
7af3daa757
gnu: librsvg-next: Adjust to changes in cargo-build-system. 
* gnu/packages/gnome.scm (librsvg-next)[arguments]: Add flag to not
install source.
 2021-03-14 19:52:44 +02:00
Mathieu Othacehe
61a1165340
ci: Add channel subset support. 
* gnu/ci.scm (cuirass-jobs): Add channel subset support.
 2021-03-14 18:19:41 +01:00
Jan (janneke) Nieuwenhuizen
7327295462
gnu: mes: Remove aarch64-linux from supported-systems. 
* gnu/packages/mes.scm (mes)[supported-systems]: Remove aarch64-linux.
Thinko: mes only builds on aarch64-linux using --system=armhf-linux.
 2021-03-14 17:32:01 +01:00
Jan (janneke) Nieuwenhuizen
7982adb40a
gnu: mescc-tools: Build for armhf-linux and aarch64-linux too. 
* gnu/packages/mes.scm (mescc-tools)[supported-systems]: New field, overriding
the v0.5.2 version.
 2021-03-14 16:49:49 +01:00
Jan (janneke) Nieuwenhuizen
a9d537594d
bootstrap: mescc-tools-static: Base arguments on version 0.5.2. 
* gnu/packages/make-bootstrap.scm (%mescc-tools-static)[arguments]: Use
fixed package-arguments of mescc-tools-0.5.2.
 2021-03-14 16:43:46 +01:00
Jan (janneke) Nieuwenhuizen
1d684aedf8
gnu: mes: Update to 0.23. 
* gnu/packages/mes.scm (mes)[source]: Update to 0.23.
[supported-systems]: Add aarch64-linux, armhf-linux.
(mes-rb5)[version,source,supported-systems]: Revert to v0.22.
 2021-03-14 12:10:07 +01:00
Jan (janneke) Nieuwenhuizen
ba485217b8
gnu: mes: Update to nyacc-1.00.2. 
* gnu/packages/mes.scm (mes)[propagated-inputs]: Use nyacc-1.00.2.
 2021-03-14 11:50:55 +01:00
Jan (janneke) Nieuwenhuizen
8b05461cab
gnu: Add nyacc-1.00.2. 
* gnu/packages/mes.scm (nyacc-1.00.2): New variable.
 2021-03-14 11:50:51 +01:00
Jan (janneke) Nieuwenhuizen
87a8eaf671
gnu: mescc-tools: Update to 0.7.0. 
* gnu/packages/mes.scm (mescc-tools)[source]: Update to 0.7.0.
[arguments]: Add patch-prefix phase to remove hardcoded "/usr/bin".
 2021-03-14 11:50:43 +01:00
Lars-Dominik Braun
930d22883d
gnu: font-libertinus: Update to 7.040. 
* gnu/packages/fonts.scm (font-libertinus): Update to 7.040.
 2021-03-14 10:45:58 +01:00
Lars-Dominik Braun
cd3b4c85f9
gnu: font-abattis-cantarell: Update to 0.301. 
* gnu/packages/fonts.scm (font-abattis-cantarell): Update to 0.301.
 2021-03-14 10:39:43 +01:00
Lars-Dominik Braun
dc1e643601
gnu: font-ibm-plex: Update to 5.1.3. 
* gnu/packages/fonts.scm (font-ibm-plex): Update to 5.1.3.
 2021-03-14 10:30:35 +01:00
Léo Le Bouter
703843922a
gun: unzip/fixed: Fix tests on 32-bit systems. 
* gnu/packages/patches/unzip-32bit-zipbomb-fix.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (unzip/fixed): Apply patch.
 2021-03-14 09:09:45 +01:00
Efraim Flashner
699a56e3a3
gnu: unzip: Fix patch name. 
This is what happens when you push without testing your changes :/

* gnu/packages/compression.scm (unzip)[source]: Adjust patch name.
 2021-03-14 09:27:43 +02:00
Efraim Flashner
cd73a812a3
gnu: unzip: Rename patch. 
* gnu/packages/patches/unzip-case-insensitive.patch: Rename from
unzip-caseinsensitive.patch.
 2021-03-14 09:25:21 +02:00
Léo Le Bouter
31d289a475
gnu: unzip: Add patches from Fedora [security fixes]. 
Non-exhaustively fixes CVE-2016-9844, CVE-2018-1000035, CVE-2018-18384, and
CVE-2019-13232.

* gnu/packages/patches/unzip-COVSCAN-fix-unterminated-string.patch,
gnu/packages/patches/unzip-CVE-2016-9844.patch,
gnu/packages/patches/unzip-CVE-2018-1000035.patch,
gnu/packages/patches/unzip-CVE-2018-18384.patch,
gnu/packages/patches/unzip-case-insensitive.patch,
gnu/packages/patches/unzip-alt-iconv-utf8-print.patch,
gnu/packages/patches/unzip-alt-iconv-utf8.patch,
gnu/packages/patches/unzip-close.patch,
gnu/packages/patches/unzip-exec-shield.patch,
gnu/packages/patches/unzip-fix-recmatch.patch,
gnu/packages/patches/unzip-manpage-fix.patch,
gnu/packages/patches/unzip-overflow.patch,
gnu/packages/patches/unzip-symlink.patch,
gnu/packages/patches/unzip-timestamp.patch,
gnu/packages/patches/unzip-valgrind.patch,
gnu/packages/patches/unzip-x-option.patch,
gnu/packages/patches/unzip-zipbomb-manpage.patch,
gnu/packages/patches/unzip-zipbomb-part1.patch,
gnu/packages/patches/unzip-zipbomb-part2.patch,
gnu/packages/patches/unzip-zipbomb-part3.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/compression.scm (unzip/fixed): New variable. Apply patches.
(unzip)[replacement]: Graft.
 2021-03-14 06:11:20 +01:00
Léo Le Bouter
92d0949a26
gnu: webkitgtk: Enable WOFF2 support. 
* gnu/packages/webkit.scm (webkitgtk):
[arguments]<#:configure-flags>: Remove "-DUSE_WOFF2=OFF".
[inputs]: Add woff2.
 2021-03-14 06:07:10 +01:00
Léo Le Bouter
37b5e79154
gnu: wpewebkit: Update to 2.30.5 [security fixes]. 
* gnu/packages/webkit.scm (wpewebkit): Update to 2.30.5.
[arguments]<#:configure-flags>: Add "-DUSE_SYSTEMD=OFF" and
"-DUSE_GSTREAMER_GL=OFF". Change "-DENABLE_ENCRYPTED_MEDIA=ON" to
"-DENABLE_ENCRYPTED_MEDIA=OFF" (DRM).
 2021-03-14 06:04:33 +01:00
Ludovic Courtès
8154beffd8
gnu: guix: Update to c8887a5. 
* gnu/packages/package-management.scm (guix): Update to c8887a5.
 2021-03-13 23:59:03 +01:00
Ludovic Courtès
c8887a5c6e
gnu: emacs-elfeed-score: Fix description Texinfo syntax. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score)[description]:
Remove extra "@".
 2021-03-13 23:22:37 +01:00
Tobias Geerinckx-Rice
faf271e96e
gnu: sudo: Update to 1.9.6. 
* gnu/packages/admin.scm (sudo): Update to 1.9.6.
 2021-03-13 22:16:56 +01:00
Tobias Geerinckx-Rice
15b39826ff
gnu: quagga: Use archived source tarball. 
* gnu/packages/networking.scm (quagga)[source]: Download from Fossies archive.
 2021-03-13 17:06:50 +01:00
Tobias Geerinckx-Rice
ca8c2d1750
gnu: console-setup: Update to 1.201. 
* gnu/packages/xorg.scm (console-setup): Update to 1.201.
 2021-03-13 15:36:53 +01:00
Tobias Geerinckx-Rice
8698829587
gnu: qjackctl: Update to 0.9.1. 
* gnu/packages/audio.scm (qjackctl): Update to 0.9.1.
 2021-03-13 15:36:53 +01:00
Gerd Heber
cb70485201
gnu: Add syscall-intercept. 
* gnu/packages/engineering.scm (syscall-intercept): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 15:11:46 +01:00
Xinglu Chen
aa0598974b
gnu: Add guile-f-scm. 
* gnu/packages/guile-xyz.scm (guile-f-scm): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 14:58:28 +01:00
Xinglu Chen
e06b1ebcaa
gnu: Add l2md. 
* gnu/packages/mail.scm (l2md): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 14:52:37 +01:00
Andy Tai
80a4b150fc
gnu: terminator: Update to 2.1.0. 
* gnu/packages/gnome.scm (terminator): Update to 2.1.0.
[inputs]: Add python, python-dbus, python-notify2.
[arguments]: Add a phase to handle Python DBus. Disable tests.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 14:43:49 +01:00
Milkey Mouse
de84dfbed5
gnu: opencl-headers: Update to 2020.12.18 
* gnu/packages/opencl.scm (opencl-headers): Update to 2020.12.18.
[version]: Use the latest tagged version, now that they exist.
[arguments]: Replace all phases with trivial header copy.
[license]: Change license to Apache 2.0 (happened in March 2020).

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 14:31:51 +01:00
Zhu Zihao
2ee7524c76
gnu: opencc: Update to 1.1.1. 
* gnu/packages/textutils.scm(opencc): Update to 1.1.1
[arguments]<#:out-of-source?>: Build in source tree.
<#:parallel-build?>: Disable.
<#:phases>: In "patch-3rd-party-references", fix the version of dependency.
Add phases "patch-python-binding-installation", "install-python-binding"
and "enable-bytecode-determinism".
[native-inputs]: Add python-setuptools and python-wheel.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 14:26:02 +01:00
Nicolas Goaziou
5e753287c8
gnu: cagebreak: Update to 1.6.0. 
* gnu/packages/wm.scm (cagebreak): Update to 1.6.0.
 2021-03-13 14:17:32 +01:00
Vinicius Monego
0455c19fa5
gnu: python-scikit-image: Enable tests. 
* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add phases
related to tests.
[native-inputs]: Add python-codecov, python-flake8, python-pytest,
python-pytest-cov, python-pytest-localserver, python-wheel.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:56:07 +01:00
Vinicius Monego
36062f16b6
gnu: python-scikit-image: Update to 0.18.1. 
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.18.1.
[propagated-inputs]: Remove python-six.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:55:15 +01:00
Vinicius Monego
211c933077
gnu: Add python-pooch. 
* gnu/packages/python-xyz.scm (python-pooch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:54:58 +01:00
Xinglu Chen
c0641c0965
gnu: Add emacs-org-msg. 
* gnu/packages/emacs-xyz.scm (emacs-org-msg): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:53:49 +01:00
Xinglu Chen
fe53300263
gnu: Add emacs-elfeed-score. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:50:54 +01:00
Stefan Reichör
71c97c89b0
gnu: Add xe. 
* gnu/packages/parallel.scm (xe): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 13:46:26 +01:00
LibreMiami
8dc25b4bb3
gnu: Add clikan. 
* gnu/packages/task-management.scm (clikan): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 12:22:56 +01:00
LibreMiami
e5d526d758
gnu: Add python-click-default-group. 
* /gnu/packages/python-xyz.scm (python-click-default-group): New
variable.

Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name>
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 12:16:22 +01:00
Xinglu Chen
339200699f
gnu: Add emacs-ox-haunt. 
* gnu/packages/emacs-xyz.scm (emacs-ox-haunt): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 12:13:03 +01:00
Nicolas Goaziou
aa59697509
gnu: emacs-ox-gemini: Fix version number. 
* gnu/packages/emacs-xyz.scm (emacs-ox-gemini)[version]: Set version number to
0 as set in the main library.
 2021-03-13 12:09:08 +01:00
Xinglu Chen
9693868579
gnu: Add emacs-ox-gemini. 
* gnu/packages/emacs-xyz.scm (emacs-ox-gemini): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-13 12:07:03 +01:00
Pierre Langlois
d091371c59
gnu: emacs-ivy-rich: Update to 0.1.6-1.7b9b7b2. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-rich): Update to git snapshot
0.1.6-1.7b9b7b2.
 2021-03-13 10:52:51 +00:00
Mark H Weaver
74e2c0e00f
gnu: gnutls: Fix CVE-2021-20231 and CVE-2021-20232. 
* gnu/packages/patches/gnutls-CVE-2021-20231.patch,
gnu/packages/patches/gnutls-CVE-2021-20232.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
(guile2.2-gnutls): Use package/inherit.
 2021-03-13 04:58:12 -05:00
Lars-Dominik Braun
ca8fa11754
gnu: mergerfs: Update to 2.32.4. 
* gnu/packages/file-systems.scm (mergerfs): Update to 2.32.4.
 2021-03-13 09:43:09 +01:00
Nicolas Goaziou
a61bdc5887
gnu: rust-resolv-conf-0.7: Use HTTPS home page URI. 
* gnu/packages/crates-io.scm (rust-resolv-conf-0.7)[home-page]: Use HTTPS URI.
 2021-03-13 09:13:23 +01:00
Kei Kebreau
b7c19f2850
gnu: wxmaxima: Update to 21.02.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
 2021-03-13 00:19:00 -05:00
Léo Le Bouter
373c7b5791
gnu: Remove bsdiff. 
As discussed in
<https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00154.html>, remove
because of unpatched CVE-2020-14315 with no non-FreeBSD patch in sight.

* gnu/packages/compression.scm (bsdiff): Remove.
 2021-03-13 02:31:53 +01:00
Léo Le Bouter
77f1bd9dea
gnu: rust-diesel: Update to 1.4.6 [fixes CVE-2021-28305]. 
* gnu/packages/crates-io.scm (rust-diesel): Update to 1.4.6.
[native-inputs]: Add sqlite for tests.
[arguments]<#:cargo-inputs>: Remove rust-bigdecimal-0.2 (incompatible),
rust-libsqlite3-sys-0.15, rust-num-bigint-0.3 and rust-uuid-0.7. Add
rust-bigdecimal-0.1, rust-libsqlite3-sys-0.20, rust-num-bigint-0.2,
rust-uuid-0.5 and rust-uuid-0.8.
[arguments]<#:phases>: Replace 'check phase to provide required feature
arguments and  exclude failing 'expression::count::count' test.
[synopsis]: Solve lint error by removing article at the beginning.
 2021-03-13 02:07:28 +01:00
Léo Le Bouter
372a16e5c7
gnu: rust-dotenv-0.10: Fix build by adding missing cargo input. 
* gnu/packages/crates-io.scm (rust-dotenv-0.10)[arguments]<#:cargo-inputs>:
Add rust-syn-0.11.
 2021-03-13 02:04:29 +01:00
Léo Le Bouter
62b1ae7444
gnu: Add rust-bigdecimal-0.1. 
* gnu/packages/crates-io.scm (rust-bigdecimal-0.1): New variable.
 2021-03-13 02:04:28 +01:00
Tobias Geerinckx-Rice
cad4aa667c
gnu: nginx-documentation: Update to 1.19.8-2673-4398fd0f0341. 
* gnu/packages/web.scm (nginx-documentation): Update to 1.19.8-2673-4398fd0f0341.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice
c325099535
gnu: nginx: Update to 1.19.8. 
* gnu/packages/web.scm (nginx): Update to 1.19.8.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice
347cc54200
gnu: apache-thrift: Update to 0.14.1. 
* gnu/packages/rpc.scm (apache-thrift): Update to 0.14.1.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice
fab02edde0
gnu: wireguard-tools: Update to 1.0.20210223. 
* gnu/packages/vpn.scm (wireguard-tools): Update to 1.0.20210223.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice
deb8853243
gnu: eid-mw: Update to 5.0.14. 
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.14.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice
1e71578c4a
gnu: micropython: Update to 1.14. 
* gnu/packages/python.scm (micropython): Update to 1.14.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice
4ddf56c136
gnu: libfreenect: Update to 0.6.2. 
* gnu/packages/openkinect.scm (libfreenect): Update to 0.6.2.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice
6862ae1a61
gnu: photoflare: Update to 1.6.7. 
* gnu/packages/photo.scm (photoflare): Update to 1.6.7.
 2021-03-13 01:00:30 +01:00
Greg Hogan
bd0808f131
gnu: aws-sdk-cpp: Update to 1.8.159. 
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.8.159.
[arguments]: Build as shared library

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:55 +01:00
Greg Hogan
9719084535
gnu: aws-c-event-stream: Update to 0.2.7. 
* gnu/packages/c.scm (aws-c-event-stream): Update to 0.2.7.
[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:55 +01:00
Greg Hogan
8ea7b6f91e
gnu: Add aws-c-io. 
* gnu/packages/c.scm (aws-c-io): New variable.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan
1b51888863
gnu: Add s2n. 
* gnu/packages/tls.scm (s2n): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan
748e2ec07a
gnu: Add aws-c-cal. 
* gnu/packages/c.scm (aws-c-cal): New variable.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan
cc95d03ec7
gnu: aws-checksums: Build as shared library. 
* gnu/packages/c.scm (aws-checksums)[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan
9d541e97e9
gnu: aws-c-common: Update to 0.5.2. 
* gnu/packages/c.scm (aws-c-common): Update to 0.5.2.
[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Leo Famulari
bb5d84a048
gnu: ImageMagick: Fix version number in build configuration of grafted replacement. 
Fixes <https://bugs.gnu.org/47110>.

This is a followup to commits 852ba914a4 and
82e887ba48.

* gnu/packages/imagemagick.scm (imagemagick/fixed)[name, arguments]: New
fields.
 2021-03-12 14:41:17 -05:00
Leo Famulari
a39faf1abd
gnu: OpenSSL: Fix version number in build configuration. 
Fixes <https://bugs.gnu.org/47108>.

This is a followup to commit 4a8b529ce1.

* gnu/packages/tls.scm (openssl/fixed)[arguments]: New field.
 2021-03-12 14:22:21 -05:00
Leo Famulari
35b3ab8e57
gnu: libtiff: Fix documentation directory name in grafted replacement. 
Fixes <https://bugs.gnu.org/47107>.

This is a followup to commit 6320700b11.

* gnu/packages/image.scm (libtiff/fixed)[name, arguments]: New fields.
 2021-03-12 14:10:31 -05:00
Nicolas Goaziou
a5a5ec5603
gnu: nushell: Update to 0.28.0. 
* gnu/packages/shells.scm (nushell):
(rust-nu-cli-0.28):
(rust-nu-command-0.28):
(rust-nu-data-0.28):
(rust-nu-engine-0.28):
(rust-nu-errors-0.28):
(rust-nu-json-0.28):
(rust-nu-plugin-0.28):
(rust-nu-plugin-binaryview-0.28):
(rust-nu-plugin-chart-0.28):
(rust-nu-plugin-fetch-0.28):
(rust-nu-plugin-from-sqlite-0.28):
(rust-nu-plugin-inc-0.28):
(rust-nu-plugin-match-0.28):
(rust-nu-plugin-post-0.28):
(rust-nu-plugin-ps-0.28):
(rust-nu-plugin-s3-0.28):
(rust-nu-plugin-sys-0.28):
(rust-nu-plugin-textview-0.28):
(rust-nu-plugin-to-bson-0.28):
(rust-nu-plugin-to-sqlite-0.28):
(rust-nu-plugin-tree-0.28):
(rust-nu-plugin-xpath-0.28):
(rust-nu-protocol-0.28):
(rust-nu-source-0.28):
(rust-nu-stream-0.28):
(rust-nu-test-support-0.28):
(rust-nu-value-ext-0.28): Update to 0.28.0.
(rust-nu-ansi-term-0.28): New variable.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou
56613cc619
gnu: Add rust-minus-3. 
* gnu/packages/crates-io.scm (rust-minus-3): New variable.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou
1fcaac7941
gnu: rust-surf-2: Update to 2.2.0. 
* gnu/packages/crates-io.scm (rust-surf-2): Update to 2.2.0.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou
7d29bfd567
gnu: rust-http-client-6: Update to 6.3.4. 
* gnu/packages/crates-io.scm (rust-http-client-6): Update to 6.3.4.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou
10a1ab0d26
gnu: Add rust-async-tls-0.10. 
* gnu/packages/crates-io.scm (rust-async-tls-0.10): New variable.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou
6fe6ab50bd
gnu: rust-webpki-0.21: Update to 0.21.4. 
* gnu/packages/crates-io.scm (rust-webpki-0.21): Update to 0.21.4.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou
a7c8060360
gnu: rust-ring-0.16: Update to 0.16.20. 
* gnu/packages/crates-io.scm (rust-ring-0.16): Update to 0.16.20.
[arguments]: Skip tests.
 2021-03-12 16:09:35 +01:00
Nicolas Goaziou
0f0589b8cd
gnu: Add rust-deadpool-0.7. 
* gnu/packages/crates-io.scm (rust-deadpool-0.7): New variable.
 2021-03-12 16:09:35 +01:00
Nicolas Goaziou
b89714b40a
gnu: rust-url-2: Update to 2.2.1. 
* gnu/packages/crates-io.scm (rust-url-2): Update to 2.2.1.
 2021-03-12 16:09:09 +01:00
Ludovic Courtès
97b45977f4
gnu: guile-zlib: Update to 0.1.0. 
* gnu/packages/guile.scm (guile-zlib): Update to 0.1.0.
 2021-03-12 15:59:45 +01:00
Sharlatan Hellseher
2e5ac371e7
gnu: Add sbcl-stumpwm-disk. 
* gnu/packages/wm.scm: (sbcl-stumpwm-disk): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-12 15:06:51 +01:00
Sharlatan Hellseher
77ee8af58c
gnu: stumpwm-contrib: Update to 0.0.1-3.a7dc1c. 
* gnu/packages/wm.scm (stumpwm-contrib): Update to 0.0.1-3.a7dc1c.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-12 15:06:51 +01:00
Guillaume Le Vaillant
a56b331e07
gnu: Add gnuais. 
* gnu/packages/radio.scm (gnuais): New variable.
 2021-03-12 15:06:50 +01:00
zimoun
df6b3c25bb
gnu: r-systempiper: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here...
* gnu/packages/bioconductor.scm (r-systempiper): ...to here.
 2021-03-12 14:45:55 +01:00
zimoun
8957efa8ef
gnu: r-shortread: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-shortread): Move from here...
* gnu/packages/bioconductor.scm (r-shortread): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun
2a97057688
gnu: r-gostats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gostats): Move from here...
* gnu/packages/bioconductor.scm (r-gostats): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun
4e7cf96c9f
gnu: r-category: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-category): Move from here...
* gnu/packages/bioconductor.scm (r-category): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun
031fdda47a
gnu: r-gseabase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun
f44079bc21
gnu: r-rbgl: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here...
* gnu/packages/bioconductor.scm (r-rbgl): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun
ff92c2873c
gnu: r-annotationforge: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun
d769b10714
gnu: r-dexseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun
373545855d
gnu: r-deseq2: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun
a35ea5fed9
gnu: r-genefilter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
 2021-03-12 14:45:53 +01:00
Ricardo Wurmus
323aec6ad9
gnu: r-bioassayr: Update home page. 
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
 2021-03-12 14:41:15 +01:00
zimoun
2528cad451
gnu: r-bioassayr: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
 2021-03-12 14:41:14 +01:00
zimoun
8c8d365ca3
gnu: r-chemminer: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
 2021-03-12 14:41:14 +01:00
zimoun
4f617bfb8e
gnu: r-circrnaprofiler: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
 2021-03-12 14:41:14 +01:00
Lars-Dominik Braun
8a8e8198ec
gnu: Add r-puniform. 
* gnu/packages/statistics.scm (r-puniform): New variable.
 2021-03-12 14:34:22 +01:00
Lars-Dominik Braun
28df54d776
gnu: Add r-clubsandwich. 
* gnu/packages/statistics.scm (r-clubsandwich): New variable.
 2021-03-12 14:34:20 +01:00
Lars-Dominik Braun
3a82f1fba2
gnu: Add r-quantpsyc. 
* gnu/packages/statistics.scm (r-quantpsyc): New variable.
 2021-03-12 14:34:19 +01:00
Lars-Dominik Braun
23bfd152c2
gnu: Add r-ez. 
* gnu/packages/cran.scm (r-ez): New variable.
 2021-03-12 14:34:18 +01:00
Lars-Dominik Braun
8a51be3cdd
gnu: Add r-prereg. 
* gnu/packages/cran.scm (r-prereg): New variable.
 2021-03-12 14:34:14 +01:00
Ricardo Wurmus
456355c253
gnu: Add python-upsetplot. 
* gnu/packages/python-science.scm (python-upsetplot): New variable.
 2021-03-12 13:56:12 +01:00
Ricardo Wurmus
4d0fdde344
gnu: Add python-statannot. 
* gnu/packages/python-science.scm (python-statannot): New variable.
 2021-03-12 13:35:02 +01:00
Pierre Neidhardt
5fa4814b4f
gnu: lisp-repl-core-dumper: Update to 0.7.0. 
* gnu/packages/lisp.scm (lisp-repl-core-dumper): Update to 0.7.0.
 2021-03-12 13:09:36 +01:00
Ricardo Wurmus
ddc1cddded
gnu: snakemake: Update to 5.32.2. 
* gnu/packages/python-xyz.scm (snakemake): Update to 5.32.2.
[arguments]: Adjust patch in call-wrapper-not-wrapped-snakemake.
 2021-03-12 13:03:33 +01:00
Mark H Weaver
825cc7e0d4
gnu: gnome-shell: Fix CVE-2020-17489. 
* gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-shell)[source]: Add patch.
 2021-03-12 06:08:33 -05:00
Mark H Weaver
db7c3410d5
gnu: gnome-shell: Update to 3.34.5. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.34.5.
 2021-03-12 06:08:33 -05:00
Mark H Weaver
f5e1909d9f
gnu: gvfs: Update to 1.40.2 [security fixes]. 
Includes fixes for CVE-2019-12447, CVE-2019-12448, CVE-2019-12449,
and CVE-2019-12795.

* gnu/packages/gnome.scm (gvfs): Update to 1.40.2.
 2021-03-12 06:08:33 -05:00
Mark H Weaver
bc16eacc99
gnu: cairo: Fix CVE-2018-19876 and CVE-2020-35492. 
* gnu/packages/patches/cairo-CVE-2018-19876.patch,
gnu/packages/patches/cairo-CVE-2020-35492.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb): Use package/inherit.
 2021-03-12 06:08:33 -05:00
Mark H Weaver
453e101fc3
gnu: gdk-pixbuf: Fix CVE-2020-29385. 
* gnu/packages/patches/gdk-pixbuf-CVE-2020-29385.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(gdk-pixbuf+svg): Use package/inherit.
 2021-03-12 06:08:32 -05:00
Ricardo Wurmus
57853d69fe
gnu: java-openjfx-graphics: Install native libraries. 
* gnu/packages/java.scm (java-openjfx-graphics)[arguments]: Add phase
copy-missing-file and build-native.
[native-inputs]: Add missing source file.
 2021-03-12 10:32:13 +01:00
Mark H Weaver
5a06b83fc9
gnu: glib: Fix CVE-2021-28153. 
* gnu/packages/patches/glib-CVE-2021-28153.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (glib/fixed): Add the new patch.
 2021-03-12 01:44:26 -05:00
Leo Famulari
c3a7537396
gnu: certbot, python-acme: Update to 1.13.0. 
* gnu/packages/tls.scm (python-acme): Update to 1.13.0.
[native-inputs]: Remove python-mock.
[propagated-inputs]: Remove python-six.
(certbot): Update to 1.13.0.
[propagated-inputs]: Remove python-six.
[arguments]: Remove 'build-documentation' phase.
 2021-03-11 21:41:47 -05:00
Kyle Meyer
09c05fde52
gnu: git-annex: Update to 8.20210310. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210310.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-03-11 18:06:39 -05:00
Leo Famulari
df632e3225
gnu: linux-libre 4.4: Update to 4.4.261. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.261.
(linux-libre-4.4-pristine-source): Update hash.
 2021-03-11 18:06:39 -05:00
Leo Famulari
2c5aff6160
gnu: linux-libre 4.9: Update to 4.9.261. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.261.
(linux-libre-4.9-pristine-source): Update hash.
 2021-03-11 18:06:39 -05:00
Leo Famulari
0988cbaeab
gnu: linux-libre 4.14: Update to 4.14.225. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.225.
(linux-libre-4.14-pristine-source): Update hash.
 2021-03-11 18:06:39 -05:00
Leo Famulari
129db4f104
gnu: linux-libre 4.19: Update to 4.19.180. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.180.
(linux-libre-4.19-pristine-source): Update hash.
 2021-03-11 18:06:39 -05:00
Leo Famulari
a4905b424e
gnu: linux-libre 5.4: Update to 5.4.105. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.105.
(linux-libre-5.4-pristine-source): Update hash.
 2021-03-11 18:06:38 -05:00
Leo Famulari
234aa6c964
gnu: linux-libre 5.10: Update to 5.10.23. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.23.
(linux-libre-5.10-pristine-source): Update hash.
 2021-03-11 18:06:38 -05:00
Leo Famulari
c39d8a11c0
gnu: linux-libre: Update to 5.11.6. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.6.
(linux-libre-5.11-pristine-source): Update hash.
 2021-03-11 18:06:38 -05:00
Xinglu Chen
42d5efc001
gnu: guile-curl: Update to 0.9. 
* gnu/packages/curl.scm (guile-curl): Update to 0.9.
[#:phases]: Update path to module.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-11 23:22:04 +01:00
Tobias Geerinckx-Rice
ebd5000263
gnu: wireshark: Update to 3.4.4. 
* gnu/packages/networking.scm (wireshark): Update to 3.4.4.
 2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice
d3e2ad740f
gnu: hangups: Update to 0.4.13. 
* gnu/packages/messaging.scm (hangups): Update to 0.4.13.
 2021-03-11 23:11:58 +01:00
Greg Hogan
47093ca4cd
gnu: fmt: Update to 7.1.3. 
* gnu/packages/pretty-print.scm (fmt): Update to 7.1.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice
c518925391
gnu: btrfs-progs: Update to 5.11. 
* gnu/packages/linux.scm (btrfs-progs): Update to 5.11.
 2021-03-11 23:11:58 +01:00