5087 Commits

Author	SHA1	Message	Date
Ricardo Wurmus	6f93502ced	gnu: Add r-genomicstate. ... * gnu/packages/bioconductor.scm (r-genomicstate): New variable. Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2	2024-01-20 19:45:26 +01:00
Ricardo Wurmus	c410d4e268	gnu: Add r-ensdb-hsapiens-v79. ... * gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable. Change-Id: I773615df66194ddb195f013f7000d175ac07d095	2024-01-20 19:45:26 +01:00
Ricardo Wurmus	eb1d80ac77	gnu: Add r-trnadbimport. ... * gnu/packages/bioconductor.scm (r-trnadbimport): New variable. Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	74ce9d7e3b	gnu: Add r-trna. ... * gnu/packages/bioconductor.scm (r-trna): New variable. Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	1d56a24509	gnu: Add r-modstrings. ... * gnu/packages/bioconductor.scm (r-modstrings): New variable. Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	5c10649a50	gnu: Add r-structstrings. ... * gnu/packages/bioconductor.scm (r-structstrings): New variable. Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	d8c718d44c	gnu: Add r-flames. ... * gnu/packages/bioconductor.scm (r-flames): New variable. Change-Id: I551a8f9d7de16e2281898b9541572dd244aadc36	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	fdc6c6e29f	gnu: Add r-sictools. ... * gnu/packages/bioconductor.scm (r-sictools): New variable. Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7	2024-01-18 23:10:39 +01:00
Ricardo Wurmus	f1aaaf2ac1	gnu: r-tximeta: Update to 1.20.2. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2. Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0	2024-01-18 16:01:55 +01:00
Ricardo Wurmus	b19e208c17	gnu: r-basilisk: Update to 1.14.2. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2. Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99	2024-01-18 16:01:55 +01:00
Ricardo Wurmus	cde5a13151	gnu: r-scran: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1. Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	eee867139c	gnu: r-xcms: Update to 4.0.2. ... * gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2. Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	a162ff0fa4	gnu: r-genomicalignments: Update to 1.38.2. ... * gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2. Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	5ad5cb8c6e	gnu: r-edger: Update to 4.0.9. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9. Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	c64c5a33b2	gnu: r-dss: Update to 2.50.1. ... * gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1. Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	e3efa67a2e	gnu: r-densvis: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1. Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	85cc64bfb8	gnu: r-animalcules: Update to 1.18.2. ... * gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2. [propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit. Change-Id: Idd769a9608154b66871a38701a49e84f008f849c	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	59706daf02	gnu: r-cytolib: Unbundle boost. ... * gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of boost. [arguments]: Change build system to link with existing boost library. [inputs]: Add boost, openblas, protobuf, and zlib. Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d	2024-01-11 17:10:24 +01:00
Ricardo Wurmus	002102983f	gnu: r-singler: Update to 2.4.1. ... * gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1. Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	c04ec0ed02	gnu: r-biocneighbors: Update to 1.20.2. ... * gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2. Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	6972aba5ea	gnu: r-inspect: Update to 1.32.1. ... * gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1. [propagated-inputs]: Remove r-gdata; add r-readxl. Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	4ca94066f1	gnu: r-genomicalignments: Update to 1.38.1. ... * gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1. Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	6e21d78b32	gnu: r-edger: Update to 4.0.6. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6. Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2	2024-01-11 14:41:31 +01:00
nafkhamdc	c1fda6cf61	gnu: Add r-jaspar2020. ... * gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060	2024-01-10 18:39:13 +01:00
nafkhamdc	feab3943c1	gnu: Add r-dsb. ... * gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd	2024-01-10 18:39:13 +01:00
nafkhamdc	2ec29a8c11	gnu: Add r-escape. ... * gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc	2024-01-10 18:39:13 +01:00
Ricardo Wurmus	5cec983e04	gnu: r-edger: Update to 4.0.5. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5. Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9	2024-01-05 17:17:33 +01:00
Ricardo Wurmus	d2a6480e8e	gnu: Add r-scrnaseq. ... * gnu/packages/bioconductor.scm (r-scrnaseq): New variable. Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c	2024-01-05 08:57:53 +01:00
Ricardo Wurmus	e8814809c2	gnu: Add r-toast. ... * gnu/packages/bioconductor.scm (r-toast): New variable. Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6	2024-01-02 19:23:51 +01:00
Ricardo Wurmus	5b030de386	gnu: Add r-epidish. ... * gnu/packages/bioconductor.scm (r-epidish): New variable. Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4	2024-01-02 19:22:13 +01:00
Mădălin Ionel Patrașcu	7593364d70	gnu: Add r-scgate. ... * gnu/packages/bioconductor.scm (r-scgate): New variable. Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f	2024-01-02 10:19:29 +01:00
Ricardo Wurmus	00e6f55ddb	gnu: r-batchelor: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1. Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	c8d1f64f40	gnu: r-genomeinfodb: Update to 1.38.5. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5. Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	2510849ec9	gnu: r-sparsearray: Update to 1.2.3. ... * gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3. Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	31e882e4b1	gnu: r-genomicscores: Update to 2.14.3. ... * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3. Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	e15b95c126	gnu: r-metapod: Update to 1.10.1. ... * gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1. Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	5673484cbc	gnu: r-biocneighbors: Update to 1.20.1. ... * gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1. Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	a72c6ba19a	gnu: r-genomeinfodb: Update to 1.38.4. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4. Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	92f179ab20	gnu: r-tximeta: Update to 1.20.1. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1. Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78	2023-12-15 17:47:43 +01:00
Ricardo Wurmus	e19a7ca446	gnu: r-biomvrcns: Update to 1.42.2. ... * gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2. Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4	2023-12-15 17:47:43 +01:00
Ricardo Wurmus	5765ddc666	gnu: r-basilisk: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1. Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	32cd9f9993	gnu: r-basilisk-utils: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1. Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	1b5ffaa960	gnu: r-gviz: Update to 1.46.1. ... * gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1. Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	280162165b	gnu: r-mscoreutils: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1. Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	2f14829a7c	gnu: r-sparsearray: Update to 1.2.2. ... * gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2. Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	aa3e41026a	gnu: r-scater: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-scater): Update to 1.30.1. Change-Id: I5e497b654bc4a26adc6d956f728f31ae631a239c	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	2fb96bed75	gnu: r-s4vectors: Update to 0.40.2. ... * gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.2. Change-Id: I6201d17fa2a6be618feb26ad632b9249f87d86c5	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	ccf2d49837	gnu: r-ucell: Update to 2.6.2. ... * gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.2. Change-Id: Ie08960a237ad1515332794b23c2bd31e94299dfe	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	be56597c9d	gnu: r-variancepartition: Update to 1.32.2. ... * gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.2. [propagated-inputs]: Add r-matrixstats. Change-Id: I436a1db36ad910aec0fac87150c62735f6509575	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	bb64a047b4	gnu: r-flowworkspace: Update to 4.14.1. ... * gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.1. Change-Id: I2e950e77842add2eebeeffac2492ba0ef1aa6422	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	2ab52103c9	gnu: r-xcms: Update to 4.0.1. ... * gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.1. Change-Id: I98dd730bb959d2483164177a3e534915d13fee44	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	e22fc284e3	gnu: r-genomicscores: Update to 2.14.2. ... * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.2. Change-Id: I00417ef0c2f9657ec39690baa52a1cd075fb69c6	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	0d5917604c	gnu: r-dose: Update to 3.28.2. ... * gnu/packages/bioconductor.scm (r-dose): Update to 3.28.2. [propagated-inputs]: Remove r-hpo-db and r-mpo-db; add r-yulab-utils. Change-Id: Ia29d318cac9b1e261fb89fc4d15f8b40ec3583f3	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	cff731dae5	gnu: r-lefser: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-lefser): Update to 1.12.1. Change-Id: Iac94395b267e925116929d48abb3c28cff31504e	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	fcdd57e5fe	gnu: r-zellkonverter: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.1. Change-Id: I0db7450b3eff32e739ea3b806dde96114caba440	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	01f345225b	gnu: r-variantannotation: Update to 1.48.1. ... * gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.1. Change-Id: I51e6a6db61fc4782823f9a7f85345742b8c7ab72	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	69126c2b9c	gnu: r-trackviewer: Update to 1.38.1. ... * gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1. Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	5a231ed554	gnu: r-tcgautils: Update to 1.22.2. ... * gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2. Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	27fab6cfee	gnu: r-rhdf5filters: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1. Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	be49fe22cd	gnu: r-rhdf5: Update to 2.46.1. ... * gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1. Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	0f499ab3b0	gnu: r-msnbase: Update to 2.28.1. ... * gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1. Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	5883f6d17f	gnu: r-genomeinfodb: Update to 1.38.2. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.2. Change-Id: I17852db375cc7e833d100998c89751e68f3d4362	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	73e20717d0	gnu: r-edger: Update to 4.0.3. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.3. Change-Id: I97d73da131092effbf2404e710389d863ba39889	2023-12-15 17:47:37 +01:00
Ricardo Wurmus	97d988cd23	gnu: r-champ: Update to 2.32.0. ... * gnu/packages/bioconductor.scm (r-champ): Update to 2.32.0. Change-Id: I2058a0c0b086452ccfae5ef84884aa0b9cf51abb	2023-12-15 17:47:37 +01:00
Ricardo Wurmus	b77fe732f0	gnu: r-annotationdbi: Update to 1.64.1. ... * gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.1. Change-Id: If7f6bef70b3f4cc59c81ea68632b36c4b8449a73	2023-12-15 17:47:37 +01:00
Ricardo Wurmus	96af9a059b	gnu: r-infercnv: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.1. Change-Id: I99b0f17246ef267a58f87c1719066b1b4f198d8b	2023-12-15 17:47:37 +01:00
Ricardo Wurmus	da79581a8f	gnu: r-dmrcate: Update to 2.16.1. ... * gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.16.1. [propagated-inputs]: Remove r-dss. Change-Id: I183971826201b19cc88eb2768716aa2e165aba1f	2023-12-15 17:47:36 +01:00
Ricardo Wurmus	ae4c47571e	gnu: r-degreport: Update to 1.38.5. ... * gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.5. [propagated-inputs]: Add r-dendextend and r-stringi. Change-Id: I73fe47489449b46406b879dba0318d02dc3c7614	2023-12-15 17:47:36 +01:00
Ricardo Wurmus	3dc5ddb82a	gnu: r-cellid: Update to 1.10.1. ... * gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.1. Change-Id: I74f0e39907eb293f84a2ee9d29ef5feab15b698a	2023-12-15 17:47:36 +01:00
Ricardo Wurmus	f5f19ac400	gnu: r-biocversion: Update to 3.18.1. ... * gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.1. Change-Id: I844d321dc3716d2658ddd75a81d844f8b302af53	2023-12-15 17:47:35 +01:00
Ricardo Wurmus	71c0e7eea6	gnu: r-bandits: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.1. Change-Id: Ied13d156cb7762fd6f86a5a0cccff302b684530d	2023-12-15 17:47:35 +01:00
Ricardo Wurmus	ea9441de8f	gnu: r-aseb: Update to 1.46.3. ... * gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.3. Change-Id: I7fb905224840f598261fceba67207cd71e7a73d9	2023-12-15 17:47:35 +01:00
Ricardo Wurmus	2dc2636444	gnu: r-anvil: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.1. Change-Id: I2ea83e4a11a1268f222201480563fe1c9ce1060b	2023-12-15 17:47:35 +01:00
Ricardo Wurmus	dafbf36e1f	gnu: r-agimicrorna: Update to 2.52.0. ... * gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.52.0. Change-Id: I0f739590d115b5dc354833cdac2ba3c400ddd995	2023-12-15 17:47:35 +01:00
Ricardo Wurmus	8341726732	gnu: r-rhdf5lib: Update to 1.24.1. ... * gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.1. [propagated-inputs]: Add r-biocstyle and r-stringr. [native-inputs]: Add r-rmarkdown. Change-Id: I18c06543abee8e4a715f1ef120ce600562804225	2023-12-15 17:27:44 +01:00
Ricardo Wurmus	c5f2535346	gnu: r-reportingtools: Update to 2.42.3. ... * gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3. [source]: Adjust snippet. [arguments]: Use minify-build-system in 'process-javascript phase. [native-inputs]: Remove r-knitr; add r-rmarkdown. Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e	2023-12-15 17:25:58 +01:00
Ricardo Wurmus	9013d47d5e	gnu: r-affycoretools: Update to 1.74.0. ... * gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.74.0. Change-Id: I4197d73e62477bb64182181229c8a33f3048406a	2023-12-15 16:52:00 +01:00
Ricardo Wurmus	1354314cdf	gnu: r-abn: Update to 3.0.4. ... * gnu/packages/bioconductor.scm (r-abn): Update to 3.0.4. Change-Id: I15970d14205b32f254ecf2c5207e98d7289ac281	2023-12-15 16:13:07 +01:00
Ricardo Wurmus	b6c482e860	gnu: r-fhtest: Update to 1.5.1. ... * gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.1. Change-Id: I08513b08ee2fc72ab00b372a013dbfa6ed064fc1	2023-12-15 16:13:07 +01:00
Ricardo Wurmus	c544f5ce82	gnu: r-biomartr: Update to 1.0.7. ... * gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.7. Change-Id: I7f02a92d86506b4fbca950a13ed106753e1b7f76	2023-12-15 16:13:07 +01:00
Ricardo Wurmus	8f72116222	gnu: r-interactivedisplay: Add missing input. ... * gnu/packages/bioconductor.scm (r-interactivedisplay)[propagated-inputs]: Add r-biocmanager. Change-Id: I7e29c28202496ba58ec35adf03b77ac84691e492	2023-12-15 16:13:07 +01:00
Ricardo Wurmus	2efa72be46	gnu: r-interactivedisplay: Add missing JavaScript sources. ... * gnu/packages/bioconductor.scm (r-interactivedisplay)[source]: Update list of minified JavaScript files to delete. [arguments]: Use minify-build-system to process JavaScript files. [native-inputs]: Add js-d3-v2; relabel js-datatables as js-datatables-1.10; add js-datatables-1.9. Change-Id: If8b6d9378680e9f69d71be56ce28add70b1a4564	2023-12-15 16:13:07 +01:00
Ricardo Wurmus	1da863cc3b	gnu: r-wgcna: Update to 1.72-5. ... * gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-5. Change-Id: Ib9d3b0e6ba191839e4b22cb0b8f63e6b0e9d2baa	2023-12-15 16:13:07 +01:00
Mădălin Ionel Patrașcu	9535cee6cd	gnu: Add r-polyester. ... * gnu/packages/bioconductor.scm (r-polyester): New variable. Change-Id: I415089cda3214ec04402fc6f4505fa868414d0e2 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>	2023-12-11 06:27:42 +01:00
Ricardo Wurmus	9b270ccefa	gnu: r-abn: Update to 3.0.3. ... * gnu/packages/bioconductor.scm (r-abn): Update to 3.0.3. Change-Id: Id94ec47d805af9da63dbf43a9edbd5e7c3a5a62a	2023-11-15 15:55:20 +01:00
Ricardo Wurmus	fefc250c60	gnu: r-activepathways: Update to 2.0.3. ... * gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.3. Change-Id: I4199c307d48583c0894a39af78f6a4027cb0cf54	2023-11-15 15:55:20 +01:00
Ricardo Wurmus	285dd08443	gnu: r-ggpicrust2: Update to 1.7.3. ... * gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.3. Change-Id: I18ab123d640ceec9315a21dff48ed2f1ea4ddff5	2023-11-15 15:55:20 +01:00
Mădălin Ionel Patrașcu	a0d337e79c	gnu: Add r-bcrank. ... * gnu/packages/bioconductor.scm (r-bcrank): New variable. Change-Id: Id43ae3b7f6eff54e1180b489c90fc72176751f9f	2023-11-13 15:05:26 +01:00
Mădălin Ionel Patrașcu	08c745dcfc	gnu: Add r-bbcanalyzer. ... * gnu/packages/bioconductor.scm (r-bbcanalyzer): New variable. Change-Id: Icd3c77c9522d73638ddb0934ad332ddb7b947a8e	2023-11-13 15:05:26 +01:00
Mădălin Ionel Patrașcu	17978740e5	gnu: Add r-baynorm. ... * gnu/packages/bioconductor.scm (r-baynorm): New variable. Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265	2023-11-13 15:05:26 +01:00
Mădălin Ionel Patrașcu	53b4e01e29	gnu: Add r-bayesspace. ... * gnu/packages/bioconductor.scm (r-bayesspace): New variable. Change-Id: Id9c0d23e209bafea5941a1e1f968fab5f1724eab	2023-11-13 15:03:29 +01:00
Mădălin Ionel Patrașcu	598b911334	gnu: Add r-bayesknockdown. ... * gnu/packages/bioconductor.scm (r-bayesknockdown): New variable. Change-Id: Icceffc04071efaa8a8b79144005fa7745abc7e1a	2023-11-13 15:01:15 +01:00
Mădălin Ionel Patrașcu	77025bd511	gnu: Add r-basicstarrseq. ... * gnu/packages/bioconductor.scm (r-basicstarrseq): New variable. Change-Id: I88f314877ea4ab98976820a4acc337ae3a34e604	2023-11-13 15:00:48 +01:00
Mădălin Ionel Patrașcu	4e1c6f4998	gnu: Add r-basics. ... * gnu/packages/bioconductor.scm (r-basics): New variable. Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a	2023-11-13 15:00:00 +01:00
Mădălin Ionel Patrașcu	47a4195649	gnu: Add r-basic4cseq. ... * gnu/packages/bioconductor.scm (r-basic4cseq): New variable. Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3	2023-11-13 14:59:26 +01:00
Mădălin Ionel Patrașcu	459d9ebd2a	gnu: Add r-bsgenome-ecoli-ncbi-20080805. ... * gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805): New variable. Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca	2023-11-13 14:57:00 +01:00
Mădălin Ionel Patrașcu	628926de80	gnu: Add r-bags. ... * gnu/packages/bioconductor.scm (r-bags): New variable. Change-Id: If0c533898a5e05809f23e7e8b52fc3d5fbffc8fb	2023-11-13 14:55:55 +01:00
Mădălin Ionel Patrașcu	d0251c23b9	gnu: Add r-breastcancervdx. ... * gnu/packages/bioconductor.scm (r-breastcancervdx): New variable. Change-Id: Ia3437ab67a00ce23c61553ff15f940b8a3ee9c8a	2023-11-13 14:55:55 +01:00
Mădălin Ionel Patrașcu	adf716c171	gnu: Add r-screpertoire. ... * gnu/packages/bioconductor.scm (r-screpertoire): New variable. Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15	2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu	01b7d917a2	gnu: Add r-powertcr. ... * gnu/packages/bioconductor.scm (r-powertcr): New variable. Change-Id: I75fc30a7021d6199b768318da3afcfeaaafcf027	2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu	58786c82df	gnu: Add r-rnbeads. ... * gnu/packages/bioconductor.scm (r-rnbeads): New variable. Change-Id: I78b248a449473fc37ac414295faa6e61269b8625 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>	2023-11-04 17:09:53 +01:00
Mădălin Ionel Patrașcu	cb0e60cccf	gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked. ... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable. Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b	2023-11-04 16:30:11 +01:00
Mădălin Ionel Patrașcu	7eeab6417f	gnu: Add r-methylaid. ... * gnu/packages/bioconductor.scm (r-methylaid): New variable. Change-Id: I7839035e5316bdbe5f1386b7b41ed2fc440fb432 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>	2023-11-04 11:37:15 +01:00
Ricardo Wurmus	8be2f44765	gnu: Remove r-sigpathway. ... This package has been removed with the release of Bioconductor 3.18. * gnu/packages/bioconductor.scm (r-sigpathway): Remove variable. Change-Id: I5cb9d938f370aa28b196f9cea95fb6024c2e6e37	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	38b5777ec8	gnu: r-rhdf5filters: Simplify. ... * gnu/packages/bioconductor.scm (r-rhdf5filters)[arguments]: Remove 'use-system-libraries phase and pass configure flags to disable bundled libraries. Change-Id: I2fb115e7b3df00cccb3f8d6659d465075d21f19b	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	142313cf0c	gnu: Remove r-genomegraphs. ... This package had been removed from Bioconductor with release 3.11. * gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable. Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	0150529188	gnu: Remove r-wavetiling. ... This package had been removed from Bioconductor since release 3.12. * gnu/packages/bioconductor.scm (r-wavetiling): Remove variable. Change-Id: I5eb624d975f0eb170b263266b144eacf11944580	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	abaca151b2	gnu: r-mpo-db: Include HPO sqlite database. ... * gnu/packages/bioconductor.scm (r-mpo-db)[arguments]: Bypass fetching of the database from the internet when in build environment. [native-inputs]: Add MPO.sqlite. Change-Id: Ic7228322b89ce78a85a9bd5ffbd985ccd906d268	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	c66c66ee3f	gnu: r-hpo-db: Include HPO sqlite database. ... * gnu/packages/bioconductor.scm (r-hpo-db)[arguments]: Bypass fetching of the database from the internet when in build environment. [native-inputs]: Add HPO.sqlite. Change-Id: Ie01605ef2531d992fb85c07bae5cfaabda626ea6	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	a938342899	gnu: r-rhdf5lib: Adjust modifications to Makevars. ... * gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Adjust patch. Change-Id: Iaef3d2d80c22de1c2a0b64e7c13f5fa3b8e5719d	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	c82c9c8090	gnu: r-phyloseq: Update to 1.46.0. ... * gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.46.0. Change-Id: Id11b5e913529ac8efce0d046168f4a9dbe0dbabd	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	1c3e8ab395	gnu: r-tximeta: Update to 1.20.0. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.0. Change-Id: I8d9c5d01efc8f6c64290cdfdd193d95cd1da9152	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	270d7e1079	gnu: r-tricycle: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-tricycle): Update to 1.10.0. Change-Id: I72a9e1140c17ce8605bfe6e83cc290eb1ae2fad2	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	9ee38f4ee6	gnu: r-tcgabiolinks: Update to 2.30.0. ... * gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.0. Change-Id: If7e571bfa6454bfa94dd395606575391dc506ecd	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	28480926a5	gnu: r-biscuiteer: Update to 1.16.0. ... * gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.16.0. Change-Id: Ib6cffbbeedfe87932acfcbfb2b789b4c92a9bf81	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	53ebbff56c	gnu: r-omnipathr: Update to 3.10.1. ... * gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.10.1. [propagated-inputs]: Add r-lubridate and r-stringi. Change-Id: Ia18b66848cd6996dfdc551bf4b182bb5ac3e17a8	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	41a4f01473	gnu: r-omicade4: Update to 1.42.0. ... * gnu/packages/bioconductor.scm (r-omicade4): Update to 1.42.0. Change-Id: I4369e5721116bf73f096ee39a516ada94c348872	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	73efb254d8	gnu: r-dmrseq: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.0. Change-Id: I738c2fb7e0fa3e816d3767f854b8f9ed77425591	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	f6e56299e7	gnu: r-dada2: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-dada2): Update to 1.30.0. Change-Id: I0955c3a61b4d81cd6809e2eb287d8acfcccfb789	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	407e9b2710	gnu: r-bsseq: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-bsseq): Update to 1.38.0. Change-Id: Ie31f0b5c726da98a0caa4c658a5c62c1a5f40eaa	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	69d7d7a6db	gnu: r-biotmle: Update to 1.26.0. ... * gnu/packages/bioconductor.scm (r-biotmle): Update to 1.26.0. Change-Id: Ied1d1e649fba277aa724040af31334f664d2debd	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	9f2c8b711b	gnu: r-biotip: Update to 1.16.0. ... * gnu/packages/bioconductor.scm (r-biotip): Update to 1.16.0. Change-Id: I73503554b0271e5fe950c6da367b4893972f27e9	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	a7d1b8832a	gnu: r-bioqc: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-bioqc): Update to 1.30.0. Change-Id: I0b5fd7cac1283a7f12a1221ad453eb56767e8b90	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	ee259a9ad9	gnu: r-bionetstat: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.22.0. Change-Id: I92f2ebef0b65b947a719bdd1008f07ce279263a4	2023-11-03 22:49:28 +01:00
Ricardo Wurmus	b0190a7d5c	gnu: r-bionet: Update to 1.62.0. ... * gnu/packages/bioconductor.scm (r-bionet): Update to 1.62.0. Change-Id: I0712a4ba67c27b32d6666e91d9515f0299e61848	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	63f3a845ea	gnu: r-bionero: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.0. Change-Id: I396a37dd28571a471b45d4d8aca6ce40a1cbd384	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	4ccceb31b9	gnu: r-biomvcclass: Update to 1.70.0. ... * gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.70.0. Change-Id: I0c6214669ec284d314eb7dc90270558934070e4b	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	b4e803a8a9	gnu: r-mvcclass: Update to 1.76.0. ... * gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.76.0. Change-Id: I6e7fa851c804009ae41a955b117d95b33fd1b2f0	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	c91a1a8bc8	gnu: r-biomformat: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-biomformat): Update to 1.30.0. Change-Id: I661d11f81a0dedbc8381b5ba1806643b5ff52aa6	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	2b4dcd4a7b	gnu: r-biodb: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-biodb): Update to 1.10.0. Change-Id: If1d14855b2bf134741c54c0a51daefdf2b80a49f	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	9480ea5046	gnu: r-biocthis: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-biocthis): Update to 1.12.0. Change-Id: I8400ebfd178f916488e022152e75db59f05994e6	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	327c9bd7c8	gnu: r-basilisk: Update to 1.14.0. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.0. Change-Id: I86f5306de138eb1fedffbae65c14f9acd504c86c	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	b5527cc3c6	gnu: r-basilisk-utils: Update to 1.14.0. ... * gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.0. Change-Id: I6113042a10770ee50e4ef997ee41fe109f917885	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	b2389dcfc1	gnu: r-dir-expiry: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.10.0. Change-Id: I1081ec981a52a51a351d98e5079f8fd4bcc399d0	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	d5026a9e16	gnu: r-genetclassifier: Update to 1.42.0. ... * gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.42.0. Change-Id: I323ca2d408c640b05c9d845570ee7af28616cce2	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	31fef7c331	gnu: r-minet: Update to 3.60.0. ... * gnu/packages/bioconductor.scm (r-minet): Update to 3.60.0. Change-Id: I4944d2e34aacc6d3ba8c5a2d2176ecf7b33ca6b8	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	ae127ddf0d	gnu: r-biobtreer: Update to 1.14.0. ... * gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.14.0. Change-Id: Icf0458c6931237a405178361778a68c1a068337c	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	d40b4c5063	gnu: r-bgeedb: Update to 2.28.0. ... * gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.28.0. Change-Id: I558f36065a9a751710843f21c6089231309705ca	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	38f88c84bf	gnu: r-bgeecall: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.18.1. Change-Id: I5db747786c63f248dec01879e41a9837c94d6d6c	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	58661d1d54	gnu: r-beclear: Update to 2.18.0. ... * gnu/packages/bioconductor.scm (r-beclear): Update to 2.18.0. Change-Id: Ia52d2072c95c4ff68cabe22cd6f9da8f3f7833b3	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	6ddf9ed610	gnu: r-megadepth: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-megadepth): Update to 1.12.0. Change-Id: Ia8424334f3183442a8e7ffb21ba664b93f6342a3	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	9d0492c750	gnu: r-ballgown: Update to 2.34.0. ... * gnu/packages/bioconductor.scm (r-ballgown): Update to 2.34.0. Change-Id: Ice69c2be8df89cb103e73de328ac6eb5919f0502	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	7e36e3ed55	gnu: r-guitar: Update to 2.18.0. ... * gnu/packages/bioconductor.scm (r-guitar): Update to 2.18.0. Change-Id: I2cd39de6e1fedbc3ed9a137373d6836e930296f2	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	0c881be497	gnu: r-chromstar: Update to 1.28.0. ... * gnu/packages/bioconductor.scm (r-chromstar): Update to 1.28.0. Change-Id: I48a305a00b1fe7c89ca4f9700ebe6f65a6265080	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	d775b141cf	gnu: r-snpstats: Update to 1.52.0. ... * gnu/packages/bioconductor.scm (r-snpstats): Update to 1.52.0. Change-Id: Ia770e5b05a7998d552b8ccb5386ddc1ad6722217	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	3b0e948493	gnu: r-snprelate: Update to 1.36.0. ... * gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.0. Change-Id: I79ab3d448ab4b10a97d9c9d36b3b849a7c491508	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	bbe5704c17	gnu: r-snapcgh: Update to 1.72.0. ... * gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.72.0. Change-Id: I7b2adbcb45461b5dc4f8248f92bfbda5f145d906	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	6b8c604e48	gnu: r-pathview: Update to 1.42.0. ... * gnu/packages/bioconductor.scm (r-pathview): Update to 1.42.0. Change-Id: I56a1425210667cc9b1ee41d20b9a71a749f6ff91	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	740e7ff51b	gnu: r-parody: Update to 1.60.0. ... * gnu/packages/bioconductor.scm (r-parody): Update to 1.60.0. Change-Id: I409588b32e582c0c6cd631d56a92ca430e2429d4	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	e9618ab210	gnu: r-ldblock: Update to 1.32.0. ... * gnu/packages/bioconductor.scm (r-ldblock): Update to 1.32.0. Change-Id: I4183a3b48e050120ffb1e5cbba3894a5637ad1cc	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	9f139605ef	gnu: r-kegggraph: Update to 1.62.0. ... * gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.62.0. Change-Id: Iadaa3580a5755ca5e611d980241191c4ae8b9452	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	b6288f949f	gnu: r-gwastools: Update to 1.48.0. ... * gnu/packages/bioconductor.scm (r-gwastools): Update to 1.48.0. [native-inputs]: Add r-knitr. Change-Id: I0544357b6f954e4812d1cdb983e12ed34f83b0d1	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	11300bd9ee	gnu: r-gwascat: Update to 2.34.0. ... * gnu/packages/bioconductor.scm (r-gwascat): Update to 2.34.0. Change-Id: I3ae4066f1e36e30cecdf15cb9a5bfb469f0d6b49	2023-11-03 22:49:27 +01:00
Ricardo Wurmus	3e5e4bf311	gnu: r-gviz: Update to 1.46.0. ... * gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.0. Change-Id: Ib7b7f039dffd4f25731a4be3edfa6ecd293ceeff	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	f52a6fe0f1	gnu: r-ggbio: Update to 1.50.0. ... * gnu/packages/bioconductor.scm (r-ggbio): Update to 1.50.0. Change-Id: I242df48dce620f327205d7f47bebfba0eae7d0c8	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	7af02a2c1d	gnu: r-erma: Update to 1.18.0. ... * gnu/packages/bioconductor.scm (r-erma): Update to 1.18.0. Change-Id: I4f5993a1b80fc10b2eceb3177402c5b577a72855	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	bfd81d4846	gnu: r-catalyst: Update to 1.26.0. ... * gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.0. [propagated-inputs]: Remove r-magrittr. Change-Id: I2026d88617251a7dd5b87e57d7891852a0ff84cf	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	fd9c0e4167	gnu: r-msmstests: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-msmstests): Update to 1.40.0. Change-Id: Ia7f0d3e6684411cda2ab93c173b3195fa8a55348	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	bf8406c30a	gnu: r-msmseda: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-msmseda): Update to 1.40.0. Change-Id: Idc5314c04de4e03047d5fa9faac907a2ab8d527d	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	f2ab2bba68	gnu: r-biocio: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-biocio): Update to 1.12.0. Change-Id: Ie6e5aee0c1a0c122f574d801e3268b460f89be2f	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	456beea62b	gnu: r-msfeatures: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.10.0. Change-Id: I47be1fd6789a9cc386bc394e5fe0724156119ec9	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	0708efd724	gnu: r-mscoreutils: Update to 1.14.0. ... * gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.0. Change-Id: Idbefebedc36bb19f5fe3549c9c3fc1e4056bf4fd	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	8fbc9cecda	gnu: r-delayedmatrixstats: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.24.0. [propagated-inputs]: Remove r-matrixstats. Change-Id: I212a19d1938a676f88c0371dc838bdfbea0ba814	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	372d1079d4	gnu: r-spatialexperiment: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.12.0. [propagated-inputs]: Remove r-dropletutils. Change-Id: I0df7aba48690c8472dee732b2aa21c9a83cb1e68	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	fb51c8df4f	gnu: r-sparsematrixstats: Update to 1.14.0. ... * gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.14.0. Change-Id: Ia8812ca08d97737c1542afc80ce31ae29e673820	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	d797b2bb6f	gnu: r-scran: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-scran): Update to 1.30.0. Change-Id: Ic22fe78b4cd043f42b6e6cf8cf1d18772f7cfe63	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	051831dedc	gnu: r-scater: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-scater): Update to 1.30.0. [propagated-inputs]: Remove r-delayedmatrixstats and r-densvis; add r-matrixgenerics. Change-Id: I7efb9c918fbc52bd0f3e184b928118cf59901d30	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	9cd2ed0580	gnu: r-scuttle: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-scuttle): Update to 1.12.0. Change-Id: Ia827e7c0cc34e84a82d844909f186eb8acecb604	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	71c77b8a95	gnu: r-singler: Update to 2.4.0. ... * gnu/packages/bioconductor.scm (r-singler): Update to 2.4.0. Change-Id: I1d3dd6343c3b604431684774075815d0454dbe6f	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	1e98a630ec	gnu: r-singlecellexperiment: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.24.0. Change-Id: I22ffd8659aab63f3abd3ace3e874c8f83df2eeff	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	f936bf66fc	gnu: r-chromvar: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-chromvar): Update to 1.24.0. Change-Id: I90826fc26d2ca866e3502b275b92b77ea091745e	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	c5068f9911	gnu: r-motifmatchr: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.24.0. Change-Id: Ic656b84be047307728609f7a80b4077b1c638d4c	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	2458396f31	gnu: r-maftools: Update to 2.18.0. ... * gnu/packages/bioconductor.scm (r-maftools): Update to 2.18.0. Change-Id: I86ad6178d842ab3c93281bc4795a76abeb3c1e35	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	eff0371eed	gnu: r-tfbstools: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.40.0. Change-Id: I5a3422fbd518ba681184e1ac36e3c1d95de07059	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	3e271e4d71	gnu: r-cner: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-cner): Update to 1.38.0. Change-Id: I8907fcc16b67330e76c5d3bd050d594f07924e8a	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	d8aa22981d	gnu: r-beaddatapackr: Update to 1.54.0. ... * gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.54.0. Change-Id: I231314cbe3d77920611221f8d234fffe123e7a26	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	74479eb3af	gnu: r-beadarraysnp: Update to 1.68.0. ... * gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.68.0. Change-Id: I699cd1b68d682e2994b360e226c147674efe440d	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	87a27ee369	gnu: r-beadarray: Update to 2.52.0. ... * gnu/packages/bioconductor.scm (r-beadarray): Update to 2.52.0. Change-Id: Id9bf32ed5c1ce7ab77eda56e2c05dacc6ce987dd	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	0223873ff9	gnu: r-beachmat: Update to 2.18.0. ... * gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.0. [propagated-inputs]: Add r-sparsearray. Change-Id: I7ef74dcb5778d994f9a25616daa8c43ce97f2a40	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	d7ceedddff	gnu: r-rhdf5lib: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.0. Change-Id: Iedc6746f91520826543dd3576591fb5d557bee8b	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	a9a7f0e6d5	gnu: r-hdf5array: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.0. Change-Id: Id4e3654018ace7d0fae1d242a592a5bdb0064354	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	9940cd5a87	gnu: r-hitc: Update to 1.46.0. ... * gnu/packages/bioconductor.scm (r-hitc): Update to 1.46.0. Change-Id: I0afa4f9da8a94712fe851268ea94af25db058a8c	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	ac96b72ebf	gnu: r-fithic: Update to 1.28.0. ... * gnu/packages/bioconductor.scm (r-fithic): Update to 1.28.0. Change-Id: I0a17ee5963458b4aa80d35eab741693f68881793	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	d2819bd479	gnu: r-fishpond: Update to 2.8.0. ... * gnu/packages/bioconductor.scm (r-fishpond): Update to 2.8.0. Change-Id: If7bdb7c7c7fc1cb1b0350b0b95813bcb48e2665b	2023-11-03 22:49:26 +01:00
Ricardo Wurmus	c4aeeb8e37	gnu: r-rgraphviz: Update to 2.46.0. ... * gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.46.0. Change-Id: Ic983783baa291a4842fbed292c090a0f31226518	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	7d25e2b5c3	gnu: r-s4vectors: Update to 0.40.1. ... * gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.1. Change-Id: I927dc9c82cd0b8c3db90c4e7c5b6eefeddbb68dc	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	43972af221	gnu: r-s4arrays: Update to 1.2.0. ... * gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.2.0. Change-Id: Ib9b6491f8047d9c8a446f1232e08a1dec7ca740b	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	dbc5c312ae	gnu: r-preprocesscore: Update to 1.64.0. ... * gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.64.0. Change-Id: Ifb7fdf7c4d74129500a74d5155b64b065e564136	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	2810ee4b0d	gnu: r-icens: Update to 1.74.0. ... * gnu/packages/bioconductor.scm (r-icens): Update to 1.74.0. Change-Id: If871b12a0d1076b2cc2f16ea64a87f1086da137e	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	b26b8e521b	gnu: r-m3c: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-m3c): Update to 1.24.0. Change-Id: Ibabb639726245ecffc51ac39fb0fa9636e9bc404	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	75e6f86cc0	gnu: r-pcatools: Update to 2.14.0. ... * gnu/packages/bioconductor.scm (r-pcatools): Update to 2.14.0. Change-Id: I35eac63ee233c103627cea0d80842c8b7db1c576	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	251e2665cf	gnu: r-biodist: Update to 1.74.0. ... * gnu/packages/bioconductor.scm (r-biodist): Update to 1.74.0. Change-Id: Ia446e4991c1955b439b2a9b40d7a22c014c5732c	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	78a082720a	gnu: r-biocworkflowtools: Update to 1.28.0. ... * gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.28.0. Change-Id: I23ba98e1feb48187df231b8174217b4e7a6fc5cd	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	c4f3bc06f5	gnu: r-biocset: Update to 1.16.0. ... * gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.0. Change-Id: I8c37bdf0eaad27d5c3010aedb400541d3b925183	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	5890114ab6	gnu: r-biocpkgtools: Update to 1.20.0. ... * gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.20.0. Change-Id: I4a19909e48efb3602bbdf346e860cd5fc1de5ced	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	b972c4f697	gnu: r-biocor: Update to 1.26.0. ... * gnu/packages/bioconductor.scm (r-biocor): Update to 1.26.0. Change-Id: I735115d213344ec92d6e7b37bbabc2f372a3e6ba	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	10cc2092a0	gnu: r-bioconcotk: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.0. Change-Id: I241228a90ff960d98534248e5f49a69acf1fb39b	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	18b06daa50	gnu: r-multiassayexperiment: Update to 1.28.0. ... * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.28.0. Change-Id: I4b8c41053ac624832377a285f5002724e409b4da	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	15961e132d	gnu: r-grohmm: Update to 1.36.0. ... * gnu/packages/bioconductor.scm (r-grohmm): Update to 1.36.0. Change-Id: I692b58aace86c5f69ba1645ebb95113f0a846409	2023-11-03 22:49:25 +01:00
Ricardo Wurmus	2b79447123	gnu: r-experimenthub: Update to 2.10.0. ... * gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.10.0. Change-Id: I1a47361ad688a9f3219a8d9e6ff2531728129177	2023-11-03 22:49:25 +01:00