gnu: Add r-baynorm.

* gnu/packages/bioconductor.scm (r-baynorm): New variable.

Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265
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Mădălin Ionel Patrașcu 2023-11-06 12:06:47 +01:00 committed by Ricardo Wurmus
parent f955194321
commit 17978740e5
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@ -22828,6 +22828,45 @@ resolution of the low-dimensional representation into \"sub-spots\", for which
features such as gene expression or cell type composition can be imputed.")
(license license:expat)))
(define-public r-baynorm
(package
(name "r-baynorm")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bayNorm" version))
(sha256
(base32 "01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq"))))
(properties `((upstream-name . "bayNorm")))
(build-system r-build-system)
(propagated-inputs
(list r-bb
r-biocparallel
r-dosnow
r-fitdistrplus
r-foreach
r-iterators
r-locfit
r-mass
r-matrix
r-rcpp
r-rcpparmadillo
r-rcppprogress
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/WT215/bayNorm")
(synopsis "Single-cell RNA sequencing data normalization")
(description
"The bayNorm package is used for normalizing single-cell RNA-seq data.
The main function is @code{bayNorm}, which is a wrapper function for gene
specific prior parameter estimation and normalization. The input is a matrix
of scRNA-seq data with rows different genes and coloums different cells. The
output is either point estimates from posterior (2D array) or samples from
posterior (3D array).")
(license license:gpl2+)))
(define-public r-biocthis
(package
(name "r-biocthis")