gnu: Add r-basic4cseq.
* gnu/packages/bioconductor.scm (r-basic4cseq): New variable. Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
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@ -22591,6 +22591,37 @@ within a certain time frame are deleted. This aims to reduce disk usage by
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eliminating obsolete caches generated by old versions of packages.")
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(license license:gpl3)))
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(define-public r-basic4cseq
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(package
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(name "r-basic4cseq")
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(version "1.38.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Basic4Cseq" version))
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(sha256
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(base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
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(properties `((upstream-name . "Basic4Cseq")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-biostrings
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r-bsgenome-ecoli-ncbi-20080805
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r-catools
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r-genomicalignments
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r-genomicranges
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r-rcircos))
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(home-page "https://bioconductor.org/packages/Basic4Cseq")
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(synopsis "Analyzing 4C-seq data")
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(description
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"Basic4Cseq is an R package for basic filtering, analysis and subsequent
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visualization of @acronym{4C-seq, circular chromosome conformation capture
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sequencing} data. Virtual fragment libraries can be created for any BSGenome
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package, and filter functions for both reads and fragments and basic quality
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controls are included. Fragment data in the vicinity of the experiment's
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viewpoint can be visualized as a coverage plot based on a running median
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approach and a multi-scale contact profile.")
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(license license:lgpl3)))
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(define-public r-basilisk-utils
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(package
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(name "r-basilisk-utils")
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