Ricardo Wurmus
4bcc9c836d
gnu: r-breastcancervdx: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.42.0.
Change-Id: I52de3659b7d07d03491091ef0de4ee5d305ec4eb
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
0e2bfbce09
gnu: r-breakpointrdata: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.22.0.
Change-Id: I111126dae913bd01e5a3f87551108e6ba1733b89
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
9d1c351076
gnu: r-biscuiteerdata: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.18.0.
Change-Id: Icc31cf376b8f2f085cc045c02383164128f0f009
2024-05-08 12:53:16 +02:00
Ricardo Wurmus
a4e4f9cf21
gnu: r-bodymaprat: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.20.0.
Change-Id: I8eb8b9e71cb1068e058b3e827096f25607ac5f01
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
62e7c74453
gnu: r-bladderbatch: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.42.0.
Change-Id: I49350259fef502e59368e4dc0894dcf52db33917
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
5b87013c93
gnu: r-bcellviper: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.40.0.
Change-Id: I5d7af04599d79147eaa2626aead238179e78cfde
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
6ac2448400
gnu: r-arrmdata: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.40.0.
Change-Id: I4695eec74200dd5deac20a71c020a9517e56f9a7
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
fa4635d3ad
gnu: r-aneufinderdata: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.32.0.
Change-Id: I91727bf7974078374a2bf9ca935b9df2ca60201f
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
4add20468d
gnu: r-adductdata: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.20.0.
Change-Id: I9f795cf931e90fa5f8331a5d3ffa855b56355ca6
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
378904acf5
gnu: r-pfam-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.19.1.
Change-Id: If95fa52bdfeb87ed606b9b7564ce73606a8616c8
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
7eabe6d69d
gnu: r-escape: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-escape): Update to 2.0.0.
[propagated-inputs]: Remove r-broom, r-data-table, r-matrix, and r-rlang; add r-aucell,
r-ggdist, r-ggpointdensity, and r-seuratobject.
Change-Id: I7fa2ea581a85a579feeac50e1e4b32ac4fa83d7b
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
a5729ea6ae
gnu: r-org-mm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1.
Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
afb439ddf1
gnu: r-org-hs-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1.
Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
b0cd3610d3
gnu: r-org-dr-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1.
Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
1e295ff0d3
gnu: r-org-dm-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1.
Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
30be3f2fc8
gnu: r-org-ce-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1.
Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
d85a5a2047
gnu: r-go-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1.
Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
5cac1ec6c5
gnu: r-genomeinfodbdata: Update to 1.2.12.
...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.12.
Change-Id: I185d52161ec45de7d03fedeb51f2a28864df9903
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
44c5036af2
gnu: r-reactome-db: Update to 1.88.0.
...
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.88.0.
Change-Id: I80b58a45e8265e82e7a84d8d428fc4339fd926a7
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
43b32ab2e6
gnu: r-org-sc-sgd-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.19.1.
Change-Id: Iee6d57797bb3dde152ce0e22a3ed25c30c039a09
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
487cf830ae
gnu: r-org-bt-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.19.1.
Change-Id: If37dc4be3287f0729b2e2d4aecef6745700b429c
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
37696fafac
gnu: r-org-eck12-eg-db: Update to 3.19.1.
...
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.19.1.
Change-Id: I0f3a84abd0dff114231c341e776b542a7b047176
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
a1852df9ff
gnu: r-mafh5-gnomad-v3-1-2-grch38: Update to 3.15.1.
...
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): Update to 3.15.1.
Change-Id: I6b83a3701c2a4282864bf648677b258c1315598c
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
8d531f9afb
gnu: Add r-ucsc-utils.
...
* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable.
Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
2024-05-08 12:53:15 +02:00
Ricardo Wurmus
61a5676a9d
gnu: r-biocpkgtools: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.22.0.
Change-Id: I4afb2530597279d9f2b6c01fc7d76c95c88aa629
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
b9040cb312
gnu: r-debcam: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.22.0.
Change-Id: Iec96dd28f8adc4d8c070f2e50098a02a4582ec33
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
45b4f78687
gnu: Add r-txdbmaker.
...
* gnu/packages/bioconductor.scm (r-txdbmaker): New variable.
Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
cf3471cc9e
gnu: Add r-pwalign.
...
* gnu/packages/bioconductor.scm (r-pwalign): New variable.
Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
155ac301f7
gnu: Add r-psmatch.
...
* gnu/packages/bioconductor.scm (r-psmatch): New variable.
Change-Id: I7b3071424563b713912016301f551ce00aceddea
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
6e126301b4
gnu: Add r-gypsum.
...
* gnu/packages/bioconductor.scm (r-gypsum): New variable.
Change-Id: Id3bdf044d9a885605b1b2b2ceba32398da6ddec0
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
2c6bd40baf
gnu: Add r-alabaster-se.
...
* gnu/packages/bioconductor.scm (r-alabaster-se): New variable.
Change-Id: I698a2d678e4819d9ac4b2668a2f7ef2063f8d674
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
1dd2cce88f
gnu: Add r-alabaster-sce.
...
* gnu/packages/bioconductor.scm (r-alabaster-sce): New variable.
Change-Id: I8121614d5b93922555b6cb5fd7a05d68980aff20
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
092609b36a
gnu: Add r-alabaster-ranges.
...
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable.
Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
ba8fbb89e4
gnu: Add r-alabaster-matrix.
...
* gnu/packages/bioconductor.scm (r-alabaster-matrix): New variable.
Change-Id: If5b438983a70f8f81e3442d8a1cb3821f4e3489a
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
8031162607
gnu: Add r-alabaster-base.
...
* gnu/packages/bioconductor.scm (r-alabaster-base): New variable.
Change-Id: Ifb9fe95fb237d12dadf134278f130e614925b5ec
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
9bd400722d
gnu: Add r-alabaster-schemas.
...
* gnu/packages/bioconductor.scm (r-alabaster-schemas): New variable.
Change-Id: I3d9218af9b4408e3375f9ccd98a4c95935b2c273
2024-05-08 12:53:14 +02:00
Ricardo Wurmus
1117e96d9f
gnu: r-cytoml: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.16.0.
Change-Id: I14ae3ae0d5ff8d66b964651b6fe3753d934f1554
2024-05-08 12:53:14 +02:00
Efraim Flashner
a9c89cd11b
gnu: r-lpsymphony: Fix building on some architectures.
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* gnu/packages/bioconductor.scm (r-lpsymphony) [arguments]: When
building for aarch64-linux or riscv64-linux replace all the config.guess
and config.sub files with newer ones.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.
Change-Id: Iaddda8c6d7330fb02bdd83733e7fa70b851a82f2
2024-05-06 23:16:55 +03:00
nafkhamdc
a710ebec1d
gnu: Add r-memes.
...
* gnu/packages/bioconductor.scm (r-memes): New variable.
Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06 00:06:19 +02:00
Ricardo Wurmus
8e5186ca9f
gnu: r-bayseq: Update to 2.36.2.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.2.
Change-Id: Ic709181286a25fb2540d73991196cd54302f6fa2
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
1ee8d23e8f
gnu: r-gsva: Update to 1.50.5.
...
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.5.
Change-Id: I18584e8766e8377f18321b4a4991edbbc933cbe2
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
32ff790ac4
gnu: r-alevinqc: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.1.
Change-Id: I84abb3751c44f4679ebf6c5c39f3b7d0027f002e
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
173108be58
gnu: r-metap: Update to 1.10.
...
* gnu/packages/bioconductor.scm (r-metap): Update to 1.10.
Change-Id: I1890c61b9a20d61a55bf76d61278729b0ae4356a
2024-04-22 11:29:27 +02:00
Ricardo Wurmus
5a95cf76e1
gnu: r-bioconcotk: Update to 1.22.2.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.2.
Change-Id: I473dc8d160d6f04eb3d90b747395d6ff73e3e9db
2024-04-10 15:12:31 +02:00
Ricardo Wurmus
1f2308ab30
gnu: r-monocle: Update to 2.30.1.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.1.
[propagated-inputs]: Remove r-qlcmatrix.
Change-Id: Id3876045fe925a82892cd2dbe7f56a0b475f2226
2024-04-10 15:12:31 +02:00
Ricardo Wurmus
6b1c49d07b
gnu: r-seqarray: Update to 1.42.4.
...
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.4.
Change-Id: I3663ed7550bdd11e2f23b0497c7bbeb2d5c6cd41
2024-04-10 15:12:31 +02:00
Ricardo Wurmus
aef6e9501b
gnu: r-gsva: Update to 1.50.2.
...
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.2.
Change-Id: I24cb1b80f6afc34c970f402292a326e7ec592534
2024-04-10 15:12:31 +02:00
Ricardo Wurmus
58e69ac117
gnu: r-annotationhub: Update to 3.10.1.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.1.
Change-Id: Ibe0b4d197a17514072febc97ef8eac684d884b67
2024-04-10 15:12:30 +02:00
Ricardo Wurmus
7a6aede61e
gnu: r-bambu: Update to 3.4.1.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.1.
Change-Id: I888802cc0b75876378c59abba72442bb5927010a
2024-04-10 15:12:30 +02:00
Ricardo Wurmus
a82e38586a
gnu: r-codedepends: Update to 0.6.6.
...
* gnu/packages/bioconductor.scm (r-codedepends): Update to 0.6.6.
[native-inputs]: Add r-knitr.
Change-Id: I38378f3c7406166007da48eed749526d6ddb9277
2024-04-10 15:12:28 +02:00
