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gnu: r-lpsymphony: Fix building on some architectures.

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* gnu/packages/bioconductor.scm (r-lpsymphony) [arguments]: When
building for aarch64-linux or riscv64-linux replace all the config.guess
and config.sub files with newer ones.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.

Change-Id: Iaddda8c6d7330fb02bdd83733e7fa70b851a82f2
This commit is contained in:
Efraim Flashner 2024-05-06 19:00:14 +03:00
parent 3053c40995
commit a9c89cd11b
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GPG Key ID: 41AAE7DCCA3D8351
1 changed files with 30 additions and 9 deletions
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39
gnu/packages/bioconductor.scm
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@ -3,7 +3,7 @@
;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017, 2022 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2022, 2024 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
@ -34,6 +34,7 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix git-download)
#:use-module (guix build-system r)
#:use-module (gnu packages)
@ -14320,17 +14321,37 @@ coordinates.")
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'make-build-order-reproducible
(lambda _
(substitute* '("src/SYMPHONY/Cgl/configure.ac"
"src/SYMPHONY/Cgl/configure")
(("for file in `ls \\*/Makefile.in`")
"for file in `ls */Makefile.in | sort`")))))))
#~(modify-phases %standard-phases
(add-after 'unpack 'make-build-order-reproducible
(lambda _
(substitute* '("src/SYMPHONY/Cgl/configure.ac"
"src/SYMPHONY/Cgl/configure")
(("for file in `ls \\*/Makefile.in`")
"for file in `ls */Makefile.in | sort`"))))
#$@(if (or (target-aarch64?)
(target-riscv64?))
#~((add-after 'unpack 'update-config-files
(lambda* (#:key native-inputs inputs #:allow-other-keys)
(for-each
(lambda (location)
(for-each (lambda (file)
(install-file
(search-input-file
(or native-inputs inputs)
(string-append "/bin/" file))
(dirname location)))
'("config.guess" "config.sub")))
(find-files "." "config\\.guess")))))
#~()))))
(inputs
(list zlib))
(native-inputs
(list pkg-config r-knitr))
(append
(list pkg-config r-knitr)
(if (or (target-aarch64?)
(target-riscv64?))
(list config)
'())))
(home-page "https://r-forge.r-project.org/projects/rsymphony")
(synopsis "Symphony integer linear programming solver in R")
(description