5126 Commits

Author	SHA1	Message	Date
Ricardo Wurmus	b61f052752	gnu: r-biocset: Update to 1.16.1. ... * gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.1. Change-Id: Ib758189b9439ec822edb2e85d261b4ccd8618609	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	c23224da61	gnu: r-bgx: Update to 1.68.3. ... * gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.3. Change-Id: I8aa747dd0a725f84dca1441693ce573a4567f70c	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	823def76d4	gnu: r-gofuncr: Update to 1.22.2. ... * gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.2. Change-Id: Iba4be0c63d792caddcea69ee77aa94ce6869c1d2	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	666393ec34	gnu: r-glmgampoi: Update to 1.14.2. ... * gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.2. Change-Id: Id7265b49246e75d23086dc159da9b4f69a756a7d	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	579683f16f	gnu: r-trajectoryutils: Update to 1.10.1. ... * gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.1. Change-Id: I18a94851cd139951c2987054c22f01809d2479b3	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	95785f4587	gnu: r-rcas: Update to 1.28.3. ... * gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.3. [propagated-inputs]: Remove r-ggseqlogo and pandoc; add r-seqlogo. Change-Id: I8be7d8fc4278c8ec2db6932935f70292a4f47049	2024-02-11 16:55:14 +01:00
Ricardo Wurmus	d24ba5f374	gnu: r-genomeinfodb: Update to 1.38.6. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.6. Change-Id: I57a53d4a73e9b4ce36d97092dab0789d6509484f	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	87110a22a9	gnu: r-dittoseq: Update to 1.14.2. ... * gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.2. Change-Id: I8930f72b47ff92b3b798d9a45fc0598bec1ba53e	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	64eb32a2d0	gnu: r-bsgenome: Update to 1.70.2. ... * gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.2. Change-Id: I45ba28279e0b843bcd635c2e30fb696e85195ce7	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	6393305afa	gnu: r-animalcules: Update to 1.18.3. ... * gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.3. Change-Id: I4f8d5897af796afbce269748c6a5676db72e4baf	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	39e92f8b66	gnu: r-curatedtcgadata: Update to 1.24.1. ... * gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.1. Change-Id: I42ae64544b53d6ddd72b948af4093ef4dd31a9c6	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	2ac299e958	gnu: r-rhdf5lib: Update to 1.24.2. ... * gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.2. [propagated-inputs]: Remove r-biocstyle and r-stringr. [native-inputs]: Remove r-rmarkdown. Change-Id: I76b1601397bc69651c0b788404c6b0c67d830830	2024-02-11 16:55:13 +01:00
Ricardo Wurmus	2f68825fc9	gnu: r-nmf: Update to 0.27. ... * gnu/packages/bioconductor.scm (r-nmf): Update to 0.27. Change-Id: I85f44258abaaceeef6d20e3b3f29512560f5efbb	2024-02-10 13:52:33 +01:00
Ricardo Wurmus	c692808a5e	gnu: r-tximeta: Update to 1.20.3. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.3. Change-Id: I0438d403e659f361e5bb3d24ccedd301ec5d59d5	2024-02-01 23:23:37 +01:00
Ricardo Wurmus	9277cc4d88	gnu: r-basilisk: Update to 1.14.3. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.3. Change-Id: I605e5a1df4047a17b631398f0db6ccdfea1638ce	2024-02-01 23:23:37 +01:00
Ricardo Wurmus	6384b98d56	gnu: r-genomicfeatures: Update to 1.54.3. ... * gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.3. Change-Id: I8c503aa209692357a7830b618f6dd0ac86b5e65c	2024-02-01 23:23:37 +01:00
Ricardo Wurmus	c4e328a2b7	gnu: r-edger: Update to 4.0.14. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.14. Change-Id: I6e620b0df01403fbf26d0a61193f463a283b25cc	2024-02-01 23:23:36 +01:00
Ricardo Wurmus	c641665dcd	gnu: r-biomart: Update to 2.58.2. ... * gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.2. Change-Id: Ie00a4761278b91a3d17a23a1d3f8b02ecca0f255	2024-02-01 23:23:36 +01:00
Ricardo Wurmus	7cdad00e30	gnu: r-scran: Update to 1.30.2. ... * gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2. Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6	2024-01-30 16:59:52 +01:00
Ricardo Wurmus	aa7950070b	gnu: r-bioccheck: Update to 1.38.2. ... * gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2. [propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest. Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	8d8eec7f9d	gnu: r-flowcore: Update to 2.14.1. ... * gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1. Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	9e1e462746	gnu: r-rsubread: Update to 2.16.1. ... * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1. Change-Id: Id01d956d2f76347270d05961dba13f65b268862a	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	ca6e432089	gnu: r-edger: Update to 4.0.12. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12. Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	4df162962d	gnu: r-biostrings: Update to 2.70.2. ... * gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2. Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	1c27a3a8a8	gnu: r-biomart: Update to 2.58.1. ... * gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1. Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985	2024-01-30 16:59:51 +01:00
Ricardo Wurmus	cd9e88c9d0	gnu: r-ggm: Update to 2.5.1. ... * gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1. [propagated-inputs]: Add r-biocmanager. Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47	2024-01-30 15:48:54 +01:00
Ricardo Wurmus	6064758fdf	gnu: r-conos: Update to 1.5.1. ... * gnu/packages/bioconductor.scm (r-conos): Update to 1.5.1. Change-Id: If05dea04f6abb3c78504ab46aa052aeb288a7c8c	2024-01-25 09:43:02 +01:00
Ricardo Wurmus	bafc6efe48	gnu: r-flowstats: Update to 4.14.1. ... * gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.1. Change-Id: I0a5d93cb08d169759b3f3817ab9b68b76fd5883f	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	1849ed7487	gnu: r-flowworkspace: Update to 4.14.2. ... * gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.2. Change-Id: I7d47b89fedf207b930fc8bef6aedcbce4628a2d9	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	522a646714	gnu: r-gosemsim: Update to 2.28.1. ... * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.1. [propagated-inputs]: Add r-yulab-utils. Change-Id: Idf93e061ef43c2900a96fa9cafeaff95d13fa3be	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	500fc9e891	gnu: r-rhtslib: Update to 2.4.1. ... * gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.1. Change-Id: If0da0bbfbbfcb2f41b354ba1772967f9fee778ca	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	c61e835022	gnu: r-edger: Update to 4.0.11. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.11. Change-Id: I27638e6082286fa6e7876ce29ecf272d88402946	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	2d331f9ba0	gnu: r-tximportdata: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.30.0. Change-Id: Id02981fc94304cade5dbdc4c13a78d7155e62408	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	2c5ea54d89	gnu: r-tcgabiolinksgui-data: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.22.0. Change-Id: Icb4d98fb51bea7d14500b84928c3cd8876161d7c	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	ab9f9b582e	gnu: r-sesamedata: Update to 1.20.0. ... * gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.20.0. Change-Id: Idc8ff7679495ede0dd037ef393300c7fe4787610	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	196e1f9025	gnu: r-parathyroidse: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.40.0. Change-Id: I2a012832f1d0ea4468497ed82c528af10d660391	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	71c4d03835	gnu: r-curatedtcgadata: Update to 1.24.0. ... * gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.0. Change-Id: If094ca958ff73b6aecd39c3d91042e9e75eb2075	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	ffd1da975f	gnu: r-gagedata: Update to 2.40.0. ... * gnu/packages/bioconductor.scm (r-gagedata): Update to 2.40.0. Change-Id: Ifdbcee3c7c6c354530d62cc79f05cf30be432f3a	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	e9a99d768b	gnu: r-affydata: Update to 1.50.0. ... * gnu/packages/bioconductor.scm (r-affydata): Update to 1.50.0. Change-Id: I653e146ff884bd72771ed779c4d9d65b03a7fdd9	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	aef69bfc03	gnu: r-all: Update to 1.44.0. ... * gnu/packages/bioconductor.scm (r-all): Update to 1.44.0. Change-Id: I9f2817b571d2c42d57927370b51319e52388a3b5	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	1d0674befe	gnu: r-hsmmsinglecell: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.22.0. Change-Id: I541a4637f7ec9b6e85e52c8f222002adef230a50	2024-01-22 13:54:46 +01:00
Ricardo Wurmus	54efc5bd86	gnu: r-pasilla: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-pasilla): Update to 1.30.0. Change-Id: I3d309814bc0237181540e1c84ad8feca34f2fcef	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	1deaa74a6f	gnu: r-msigdb: Update to 1.10.0. ... * gnu/packages/bioconductor.scm (r-msigdb): Update to 1.10.0. Change-Id: I32ad805ff92e7084eb682c239037978f183c323e	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	88beafd5dc	gnu: r-msdata: Update to 0.42.0. ... * gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0. Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	13c2e3c9e4	gnu: r-minfidata: Update to 0.48.0. ... * gnu/packages/bioconductor.scm (r-minfidata): Update to 0.48.0. Change-Id: I8485d570629d23b294a9ea4143a88ed91ae737af	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	cbb019eef6	gnu: r-mousegastrulationdata: Update to 1.16.0. ... * gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0. Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	55b3f66131	gnu: r-macrophage: Update to 1.18.0. ... * gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0. Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	0af8e69b32	gnu: r-italicsdata: Update to 2.40.0. ... * gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0. Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	f4f7b82c5e	gnu: r-illumina450probevariants-db: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0. Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	da790d92e5	gnu: r-hdcytodata: Update to 1.22.0. ... * gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0. Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	c916f39b5c	gnu: r-genomationdata: Update to 1.34.0. ... * gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0. Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	8369898fb0	gnu: r-genelendatabase: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0. Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	95c3baf59f	gnu: r-flowsorted-blood-epic: Update to 2.6.0. ... * gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0. Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	43e6cc3189	gnu: r-flowsorted-blood-450k: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0. Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	4c4f07ca26	gnu: r-copyhelper: Update to 1.34.0. ... * gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0. Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	f0591739ce	gnu: r-chromstardata: Update to 1.28.0. ... * gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0. Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	225f49fb30	gnu: r-champdata: Update to 2.34.0. ... * gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0. Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	7b5db44490	gnu: r-celldex: Update to 1.12.0. ... * gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0. Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	1aac5e7bc8	gnu: r-breakpointrdata: Update to 1.20.0. ... * gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0. Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	6c1bb9047e	gnu: r-biscuiteerdata: Update to 1.16.0. ... * gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0. [propagated-inputs]: Add r-genomicranges. Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	cd5a4ac6df	gnu: r-bladderbatch: Update to 1.40.0. ... * gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0. Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	09ee801fe9	gnu: r-bcellviper: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0. Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	ee966f03d5	gnu: r-arrmdata: Update to 1.38.0. ... * gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0. Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	9512db59ab	gnu: r-aneufinderdata: Update to 1.30.0. ... * gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0. Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	8f70c2352d	gnu: r-adductdata: Update to 1.18.0. ... * gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0. Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	b6fb97a250	gnu: r-pfam-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0. Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	f16f8105e8	gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0. Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	5265421826	gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5. ... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5. [propagated-inputs]: Add r-genomeinfodb. Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	505aac07c4	gnu: r-org-mm-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0. Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a	2024-01-22 13:54:45 +01:00
Ricardo Wurmus	f13e407689	gnu: r-org-dr-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0. Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	8445ad15ec	gnu: r-org-dm-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0. Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	0adeabcf53	gnu: r-org-ce-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0. Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	297fc0d76c	gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1. ... * gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1. Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	c5a934df85	gnu: r-go-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0. Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	d9de950ac6	gnu: r-genomeinfodbdata: Update to 1.2.11. ... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11. Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	2ee9cce50f	gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3. ... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3. Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	6ee0d63dfc	gnu: r-reactome-db: Update to 1.86.2. ... * gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2. Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	287c5b085b	gnu: r-org-sc-sgd-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0. Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	8ec5a25eff	gnu: r-org-bt-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0. Change-Id: I4385882eeb83326af88141b301f892632f6cf678	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	d2573f4e28	gnu: r-org-eck12-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0. Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c	2024-01-22 13:54:44 +01:00
Ricardo Wurmus	e775f704c8	gnu: Add r-bodymaprat. ... * gnu/packages/bioconductor.scm (r-bodymaprat): New variable. Change-Id: I6843b957d5722f4c5460796ba41effee5717ae45	2024-01-21 23:54:23 +01:00
Ricardo Wurmus	1d00a9edff	gnu: Add r-protgear. ... * gnu/packages/bioconductor.scm (r-protgear): New variable. Change-Id: Ic6d5cae65d4f76df4488ee2462071ba68b50c184	2024-01-21 11:08:13 +01:00
Ricardo Wurmus	0facea431a	gnu: Add r-netgsa. ... * gnu/packages/bioconductor.scm (r-netgsa): New variable. Change-Id: I79b842854db80bbacdb8ff4c9fccfabdfc04d779	2024-01-21 08:33:56 +01:00
Ricardo Wurmus	6648e34342	gnu: Add r-rcy3. ... * gnu/packages/bioconductor.scm (r-rcy3): New variable. Change-Id: Ia295e8a174f65c8378ae83bdc1dde2877a48ff45	2024-01-21 08:30:40 +01:00
Ricardo Wurmus	8ca35ca44f	gnu: r-cytolib: Update to 2.14.1. ... * gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1. [source]: Do not unbundle included boost. [arguments]: Remove. [inputs]: Remove boost. Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895	2024-01-21 00:17:45 +01:00
Ricardo Wurmus	9072f27f5d	gnu: r-org-hs-eg-db: Update to 3.18.0. ... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0. Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed	2024-01-20 19:52:40 +01:00
Ricardo Wurmus	d441454ba8	gnu: Add r-methylclockdata. ... * gnu/packages/bioconductor.scm (r-methylclockdata): New variable. Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2	2024-01-20 19:52:24 +01:00
Ricardo Wurmus	2b3a21c55f	gnu: Add r-experimenthubdata. ... * gnu/packages/bioconductor.scm (r-experimenthubdata): New variable. Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18	2024-01-20 19:52:05 +01:00
Ricardo Wurmus	c4838027b4	gnu: Add r-jaspar2016. ... * gnu/packages/bioconductor.scm (r-jaspar2016): New variable. Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2	2024-01-20 19:50:13 +01:00
Ricardo Wurmus	6f93502ced	gnu: Add r-genomicstate. ... * gnu/packages/bioconductor.scm (r-genomicstate): New variable. Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2	2024-01-20 19:45:26 +01:00
Ricardo Wurmus	c410d4e268	gnu: Add r-ensdb-hsapiens-v79. ... * gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable. Change-Id: I773615df66194ddb195f013f7000d175ac07d095	2024-01-20 19:45:26 +01:00
Ricardo Wurmus	eb1d80ac77	gnu: Add r-trnadbimport. ... * gnu/packages/bioconductor.scm (r-trnadbimport): New variable. Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	74ce9d7e3b	gnu: Add r-trna. ... * gnu/packages/bioconductor.scm (r-trna): New variable. Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	1d56a24509	gnu: Add r-modstrings. ... * gnu/packages/bioconductor.scm (r-modstrings): New variable. Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	5c10649a50	gnu: Add r-structstrings. ... * gnu/packages/bioconductor.scm (r-structstrings): New variable. Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	d8c718d44c	gnu: Add r-flames. ... * gnu/packages/bioconductor.scm (r-flames): New variable. Change-Id: I551a8f9d7de16e2281898b9541572dd244aadc36	2024-01-19 23:55:43 +01:00
Ricardo Wurmus	fdc6c6e29f	gnu: Add r-sictools. ... * gnu/packages/bioconductor.scm (r-sictools): New variable. Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7	2024-01-18 23:10:39 +01:00
Ricardo Wurmus	f1aaaf2ac1	gnu: r-tximeta: Update to 1.20.2. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2. Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0	2024-01-18 16:01:55 +01:00
Ricardo Wurmus	b19e208c17	gnu: r-basilisk: Update to 1.14.2. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2. Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99	2024-01-18 16:01:55 +01:00
Ricardo Wurmus	cde5a13151	gnu: r-scran: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1. Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	eee867139c	gnu: r-xcms: Update to 4.0.2. ... * gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2. Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	a162ff0fa4	gnu: r-genomicalignments: Update to 1.38.2. ... * gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2. Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	5ad5cb8c6e	gnu: r-edger: Update to 4.0.9. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9. Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	c64c5a33b2	gnu: r-dss: Update to 2.50.1. ... * gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1. Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	e3efa67a2e	gnu: r-densvis: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1. Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	85cc64bfb8	gnu: r-animalcules: Update to 1.18.2. ... * gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2. [propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit. Change-Id: Idd769a9608154b66871a38701a49e84f008f849c	2024-01-18 16:01:54 +01:00
Ricardo Wurmus	59706daf02	gnu: r-cytolib: Unbundle boost. ... * gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of boost. [arguments]: Change build system to link with existing boost library. [inputs]: Add boost, openblas, protobuf, and zlib. Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d	2024-01-11 17:10:24 +01:00
Ricardo Wurmus	002102983f	gnu: r-singler: Update to 2.4.1. ... * gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1. Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	c04ec0ed02	gnu: r-biocneighbors: Update to 1.20.2. ... * gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2. Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	6972aba5ea	gnu: r-inspect: Update to 1.32.1. ... * gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1. [propagated-inputs]: Remove r-gdata; add r-readxl. Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	4ca94066f1	gnu: r-genomicalignments: Update to 1.38.1. ... * gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1. Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40	2024-01-11 14:41:31 +01:00
Ricardo Wurmus	6e21d78b32	gnu: r-edger: Update to 4.0.6. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6. Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2	2024-01-11 14:41:31 +01:00
nafkhamdc	c1fda6cf61	gnu: Add r-jaspar2020. ... * gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060	2024-01-10 18:39:13 +01:00
nafkhamdc	feab3943c1	gnu: Add r-dsb. ... * gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd	2024-01-10 18:39:13 +01:00
nafkhamdc	2ec29a8c11	gnu: Add r-escape. ... * gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc	2024-01-10 18:39:13 +01:00
Ricardo Wurmus	5cec983e04	gnu: r-edger: Update to 4.0.5. ... * gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5. Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9	2024-01-05 17:17:33 +01:00
Ricardo Wurmus	d2a6480e8e	gnu: Add r-scrnaseq. ... * gnu/packages/bioconductor.scm (r-scrnaseq): New variable. Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c	2024-01-05 08:57:53 +01:00
Ricardo Wurmus	e8814809c2	gnu: Add r-toast. ... * gnu/packages/bioconductor.scm (r-toast): New variable. Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6	2024-01-02 19:23:51 +01:00
Ricardo Wurmus	5b030de386	gnu: Add r-epidish. ... * gnu/packages/bioconductor.scm (r-epidish): New variable. Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4	2024-01-02 19:22:13 +01:00
Mădălin Ionel Patrașcu	7593364d70	gnu: Add r-scgate. ... * gnu/packages/bioconductor.scm (r-scgate): New variable. Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f	2024-01-02 10:19:29 +01:00
Ricardo Wurmus	00e6f55ddb	gnu: r-batchelor: Update to 1.18.1. ... * gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1. Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	c8d1f64f40	gnu: r-genomeinfodb: Update to 1.38.5. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5. Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	2510849ec9	gnu: r-sparsearray: Update to 1.2.3. ... * gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3. Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	31e882e4b1	gnu: r-genomicscores: Update to 2.14.3. ... * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3. Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	e15b95c126	gnu: r-metapod: Update to 1.10.1. ... * gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1. Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	5673484cbc	gnu: r-biocneighbors: Update to 1.20.1. ... * gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1. Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	a72c6ba19a	gnu: r-genomeinfodb: Update to 1.38.4. ... * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4. Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e	2024-01-01 14:35:16 +01:00
Ricardo Wurmus	92f179ab20	gnu: r-tximeta: Update to 1.20.1. ... * gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1. Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78	2023-12-15 17:47:43 +01:00
Ricardo Wurmus	e19a7ca446	gnu: r-biomvrcns: Update to 1.42.2. ... * gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2. Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4	2023-12-15 17:47:43 +01:00
Ricardo Wurmus	5765ddc666	gnu: r-basilisk: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1. Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	32cd9f9993	gnu: r-basilisk-utils: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1. Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	1b5ffaa960	gnu: r-gviz: Update to 1.46.1. ... * gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1. Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	280162165b	gnu: r-mscoreutils: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1. Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac	2023-12-15 17:47:42 +01:00
Ricardo Wurmus	2f14829a7c	gnu: r-sparsearray: Update to 1.2.2. ... * gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2. Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	aa3e41026a	gnu: r-scater: Update to 1.30.1. ... * gnu/packages/bioconductor.scm (r-scater): Update to 1.30.1. Change-Id: I5e497b654bc4a26adc6d956f728f31ae631a239c	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	2fb96bed75	gnu: r-s4vectors: Update to 0.40.2. ... * gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.2. Change-Id: I6201d17fa2a6be618feb26ad632b9249f87d86c5	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	ccf2d49837	gnu: r-ucell: Update to 2.6.2. ... * gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.2. Change-Id: Ie08960a237ad1515332794b23c2bd31e94299dfe	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	be56597c9d	gnu: r-variancepartition: Update to 1.32.2. ... * gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.2. [propagated-inputs]: Add r-matrixstats. Change-Id: I436a1db36ad910aec0fac87150c62735f6509575	2023-12-15 17:47:41 +01:00
Ricardo Wurmus	bb64a047b4	gnu: r-flowworkspace: Update to 4.14.1. ... * gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.1. Change-Id: I2e950e77842add2eebeeffac2492ba0ef1aa6422	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	2ab52103c9	gnu: r-xcms: Update to 4.0.1. ... * gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.1. Change-Id: I98dd730bb959d2483164177a3e534915d13fee44	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	e22fc284e3	gnu: r-genomicscores: Update to 2.14.2. ... * gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.2. Change-Id: I00417ef0c2f9657ec39690baa52a1cd075fb69c6	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	0d5917604c	gnu: r-dose: Update to 3.28.2. ... * gnu/packages/bioconductor.scm (r-dose): Update to 3.28.2. [propagated-inputs]: Remove r-hpo-db and r-mpo-db; add r-yulab-utils. Change-Id: Ia29d318cac9b1e261fb89fc4d15f8b40ec3583f3	2023-12-15 17:47:40 +01:00
Ricardo Wurmus	cff731dae5	gnu: r-lefser: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-lefser): Update to 1.12.1. Change-Id: Iac94395b267e925116929d48abb3c28cff31504e	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	fcdd57e5fe	gnu: r-zellkonverter: Update to 1.12.1. ... * gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.1. Change-Id: I0db7450b3eff32e739ea3b806dde96114caba440	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	01f345225b	gnu: r-variantannotation: Update to 1.48.1. ... * gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.1. Change-Id: I51e6a6db61fc4782823f9a7f85345742b8c7ab72	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	69126c2b9c	gnu: r-trackviewer: Update to 1.38.1. ... * gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1. Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e	2023-12-15 17:47:39 +01:00
Ricardo Wurmus	5a231ed554	gnu: r-tcgautils: Update to 1.22.2. ... * gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2. Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	27fab6cfee	gnu: r-rhdf5filters: Update to 1.14.1. ... * gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1. Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	be49fe22cd	gnu: r-rhdf5: Update to 2.46.1. ... * gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1. Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003	2023-12-15 17:47:38 +01:00
Ricardo Wurmus	0f499ab3b0	gnu: r-msnbase: Update to 2.28.1. ... * gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1. Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705	2023-12-15 17:47:38 +01:00