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51 Commits

Author SHA1 Message Date
sthen
1a9efa54ec bump packages with Perl .so modules; the old ones don't work 
with new perl and the package signature doesn't change, so we
have to do this ourselves to make pkg_add updates work.

ok simon@
 2008-10-02 20:32:18 +00:00
jasper
13911bd3b9 - update emboss to the latest stable version, 6.0.1 2008-09-24 17:14:26 +00:00
jasper
ddfa68651b - add p5-Bio-ASN1-EntrezGene 2008-09-24 13:37:27 +00:00
jasper
ddc0be8edf import p5-Bio-ASN1-EntrezGene 1.091 
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI
Entrez Gene genome databases
(http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It parses an
ASN.1-formatted Entrez Gene record and returns a data structure that
contains all data items from the gene record.
 2008-09-24 13:36:21 +00:00
jasper
3f7b1e2bf1 - update AcePerl to 1.91 
ok simon@
 2008-09-23 20:57:20 +00:00
jasper
09d4dc6d7e - update nutdb to 13.9 
- update HOMEPAGE
- remove maintainer who has been inactive/unresponsive for years
 2008-09-22 08:13:28 +00:00
jasper
ffb906e4e2 - update nutdb to 13.5 
maintainer time-out.
 2008-04-11 09:15:49 +00:00
jasper
1067ad1896 fix build on mips64. 
no bump, because !mips64 packages didn't change, and mips64 didn't package.

ok mbalmer@ (some time ago)
 2008-02-10 18:23:24 +00:00
okan
fc0db83b02 update to 1.44 from Will Maier (new MAINTAINER) 
ok merdely
 2008-01-12 02:00:24 +00:00
winiger
353c3a971f change dependency to flavored python product 
ok simon@,mbalmer@
 2008-01-11 09:25:59 +00:00
bernd
c26229397e emboss and pscan both install ${LOCALBASE}/bin/pscan. 
Add @conflict markers.
 2007-11-06 06:30:32 +00:00
ajacoutot
756427d1a0 - register egg-info file in PLIST 2007-11-02 10:10:11 +00:00
ajacoutot
137c1a3458 - bring ed(1) to the rescue ; it looks like my latest "fix" was too late 
(I will now hide...)

input by and ok pyr@
 2007-10-19 08:38:24 +00:00
ajacoutot
cb53492933 - oops, got bitten by CVS ; sorry about that 2007-10-19 06:44:36 +00:00
ajacoutot
064f8ab515 - really unbreak 
noticed by Stephan Andre' <andres at msu dot edu>, thanks!
 2007-10-18 20:56:59 +00:00
ajacoutot
da653f2cb9 - make it package again 
- bump (new python version)
 2007-10-18 15:22:15 +00:00
steven
cdb3268835 +emboss 2007-09-25 08:23:38 +00:00
steven
2f69c61a4a initial import of EMBOSS 5.0.0 
European Molecular Biology Open Software Suite
 2007-09-25 08:23:02 +00:00
sthen
d2f4eba081 ace.pl(1) manpage is generated but useless; @comment it to avoid 
"Couldn't find subject in old manpage /usr/local/man/man1/ace.pl.1
Unknown manpage type /usr/local/man/man1/ace.pl.1" at pkg_add.

P5ARCH is in base file sets anyway, remove from PLIST.

ok merdely@
 2007-09-18 23:36:54 +00:00
simon
e9d64e5841 remove surrounding quotes from COMMENT 2007-09-15 21:32:05 +00:00
jasper
be202ef2f9 update nutdb to 12.5 2007-06-11 21:02:40 +00:00
espie
807b2c46da shorten comment 2007-05-17 10:52:25 +00:00
espie
470294650d base64 distinfo with SHA256 2007-04-05 15:37:40 +00:00
martynas
74afee703e update to nutdb-12.4 
ok steven@
 2007-03-31 08:58:30 +00:00
jasper
85ee819f85 update nutdb to 12.3 2007-02-02 14:32:52 +00:00
jasper
b0fddd23c7 fix PKGNAME, noticed by Stuart Henderson 
regen patch while there.
 2007-01-31 13:43:27 +00:00
jasper
5a7554c2b7 update nutdb to 12.0 
(no response from maintainer)
 2006-11-30 17:38:27 +00:00
steven
26b92847b2 master site fixes 2006-07-13 07:43:40 +00:00
alek
215e64d3a2 Bump PKGNAME after recent python switch; regen PLIST 2006-06-03 09:23:14 +00:00
alek
440c0f2686 Fix build with python 2.4 
problem spotted and ok steven@
 2005-12-18 20:33:17 +00:00
alek
1d6d4168a4 Update to 1.41 2005-12-03 22:34:52 +00:00
bernd
f123e951b5 - Fix some file modes here as well. 
- update-patches while I'm here
- bump PKGNAME

ok niallo@
 2005-11-01 17:18:15 +00:00
xsa
2575f38933 job changed :-( so did work environment. 
drop maintainership as I do not often use those anymore...
 2005-10-25 18:37:14 +00:00
naddy
307564922b add missing description 2005-05-26 21:18:46 +00:00
alek
260ce5cd00 Add WANTLIB marker 2005-03-11 17:01:28 +00:00
espie
e6da792b99 +bioperl 2005-03-03 01:42:56 +00:00
espie
c0e8fe3062 bioperl is a big suite of perl modules and scripts for bioinformatics: 
sequence comparisons and interfaces to various biological databases.
 2005-03-03 01:42:12 +00:00
espie
39123c1737 add AcePerl modules 2005-03-03 00:11:47 +00:00
espie
ceb9f444a3 ACEDB is an OO database specialized in genome issues, 
AcePerl yields an interface to it.
 2005-03-03 00:10:54 +00:00
naddy
1463a06ce3 update to 10.15; from maintainer Jon Trembley <jon@brain-box.net> 2005-02-07 17:34:23 +00:00
espie
86482b9616 fix build when biopython is already installed. 2005-01-16 14:26:19 +00:00
naddy
199c30b4ac SIZE 2005-01-05 15:47:05 +00:00
sturm
a7022f3ea3 update to nutdb 10.12 
new recipe-guess algorithm

from maintainer Jon Trembley <jon at brain-box.net>
 2004-12-25 19:35:34 +00:00
xsa
cbe08f8a8a Update to nutdb-10.11; 
based on diff from MAINTAINER Jon Trembley <jon at brain-box dot net>
 2004-12-05 11:52:17 +00:00
espie
b8fe381658 WANTLIB markers 2004-11-21 18:03:29 +00:00
pvalchev
0d60a82a99 update to nutdb-10.8; from maintainer Jon Trembley 2004-10-31 17:41:49 +00:00
pvalchev
9df8098610 +nutdb 2004-10-21 01:41:51 +00:00
pvalchev
bd51341930 Initial import of nutdb-10.7 
NUT allows you to record what you eat and analyze your meals
for nutrient composition.  The database included is the USDA
Nutrient Database for Standard Reference, Release 17, which
contains 6,839 foods and 128 nutrients.

Maintainer: Jon Trembley <jon@brain-box.net>
 2004-10-21 01:41:22 +00:00
espie
eee7cff8c5 new-style MODULES, PLIST. 2004-08-03 11:18:02 +00:00
xsa
42dfae1459 new biology category; ok espie@. 
+ py-biopython
 2004-05-07 08:59:37 +00:00