initial import of EMBOSS 5.0.0

European Molecular Biology Open Software Suite

biology/emboss/Makefile

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+# $OpenBSD: Makefile,v 1.1.1.1 2007/09/25 08:23:02 steven Exp $
+
+COMMENT=	European Molecular Biology Open Software Suite
+
+DISTNAME=	EMBOSS-5.0.0
+PKGNAME=	${DISTNAME:L}
+SHARED_LIBS +=  eplplot                 0.0   # .5.7
+SHARED_LIBS +=  ajax                    0.0   # .5.0
+SHARED_LIBS +=  ajaxg                   0.0   # .5.0
+SHARED_LIBS +=  nucleus                 0.0   # .5.0
+
+CATEGORIES=	biology
+
+HOMEPAGE=	http://emboss.sourceforge.net/
+
+# GPL v2
+PERMIT_PACKAGE_FTP=	Yes
+PERMIT_PACKAGE_CDROM=	Yes
+PERMIT_DISTFILES_FTP=	Yes
+PERMIT_DISTFILES_CDROM=	Yes
+
+MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/
+
+WANTLIB=	X11 Xau Xdmcp c m
+
+USE_X11=	Yes
+USE_LIBTOOL=	Yes
+CONFIGURE_STYLE=gnu
+CONFIGURE_ENV=	CPPFLAGS="-I${LOCALBASE}/include" \
+		LDFLAGS="-L${LOCALBASE}/lib"
+
+DOC_DIRS=	manuals tutorials programs/text programs/html
+
+pre-configure:
+.for d in ${DOC_DIRS}
+	perl -pi -e \
+	  's#\$$\(prefix\)/share/\$$\(PACKAGE\)/doc#\$$(datadir)/doc/\$$(PACKAGE)#' \
+	  ${WRKSRC}/doc/$d/Makefile.in
+.endfor
+
+post-install:
+	rm -f ${PREFIX}/include/pcre*
+
+.include <bsd.port.mk>

biology/emboss/distinfo

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+MD5 (EMBOSS-5.0.0.tar.gz) = vkyJUiCtNK/WXUULp9jjSw==
+RMD160 (EMBOSS-5.0.0.tar.gz) = G/UQwJGdmR5LpnGCE3RI3uSbq00=
+SHA1 (EMBOSS-5.0.0.tar.gz) = GtTtxICKgiX+jVdOin0Ghr6ZysY=
+SHA256 (EMBOSS-5.0.0.tar.gz) = ZObwm4KnGf8m3n8h/ffSvWBdLGZDhMHHtI+dJF1fQK4=
+SIZE (EMBOSS-5.0.0.tar.gz) = 20666560

biology/emboss/pkg/DESCR

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+EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS
+is a free Open Source software analysis package specially developed for
+the needs of the molecular biology (e.g. EMBnet) user community. The
+software automatically copes with data in a variety of formats and even
+allows transparent retrieval of sequence data from the web. Also, as
+extensive libraries are provided with the package, it is a platform to
+allow other scientists to develop and release software in true open
+source spirit. EMBOSS also integrates a range of currently available
+packages and tools for sequence analysis into a seamless whole. EMBOSS
+breaks the historical trend towards commercial software packages.

biology/emboss/pkg/PFRAG.shared

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+@comment $OpenBSD: PFRAG.shared,v 1.1.1.1 2007/09/25 08:23:04 steven Exp $
+@lib lib/libajax.so.${LIBajax_VERSION}
+@lib lib/libajaxg.so.${LIBajaxg_VERSION}
+@lib lib/libeplplot.so.${LIBeplplot_VERSION}
+@lib lib/libnucleus.so.${LIBnucleus_VERSION}