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new-style MODULES, PLIST.

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espie 2004-08-03 11:18:02 +00:00
parent 6ff36eddfe
commit eee7cff8c5
2 changed files with 126 additions and 127 deletions
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7
biology/py-biopython/Makefile
View File

@ -1,7 +1,6 @@
# $OpenBSD: Makefile,v 1.1.1.1 2004/05/07 08:57:15 xsa Exp $
NOT_FOR_ARCHS= ${NO_SHARED_ARCHS}
# $OpenBSD: Makefile,v 1.2 2004/08/03 11:18:02 espie Exp $
SHARED_ONLY= Yes
COMMENT= "Python tools for computational molecular biology"
DISTNAME= biopython-1.24
@ -20,7 +19,7 @@ PERMIT_DISTFILES_FTP= Yes
MASTER_SITES= ${HOMEPAGE}files/
MODULES= python
MODULES= lang/python
BUILD_DEPENDS= ${RUN_DEPENDS}
RUN_DEPENDS= ::devel/py-mxDateTime \

246
biology/py-biopython/pkg/PLIST
View File

@ -1,8 +1,11 @@
@comment $OpenBSD: PLIST,v 1.1.1.1 2004/05/07 08:57:20 xsa Exp $
@comment $OpenBSD: PLIST,v 1.2 2004/08/03 11:18:02 espie Exp $
lib/python${MODPY_VERSION}/site-packages/Bio/
lib/python${MODPY_VERSION}/site-packages/Bio/Ais/
lib/python${MODPY_VERSION}/site-packages/Bio/Ais/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Ais/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Ais/example_ais2.py
lib/python${MODPY_VERSION}/site-packages/Bio/Ais/example_ais2.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Align/
lib/python${MODPY_VERSION}/site-packages/Bio/Align/AlignInfo.py
lib/python${MODPY_VERSION}/site-packages/Bio/Align/AlignInfo.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Align/FormatConvert.py
@ -11,6 +14,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Align/Generic.py
lib/python${MODPY_VERSION}/site-packages/Bio/Align/Generic.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Align/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Align/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/AlignAceStandalone.py
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/AlignAceStandalone.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/Applications.py
@ -23,12 +27,15 @@ lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/Scanner.py
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/Scanner.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/
lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/IUPAC.py
lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/IUPAC.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Application/
lib/python${MODPY_VERSION}/site-packages/Bio/Application/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Application/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Applications.py
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Applications.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/NCBIStandalone.py
@ -41,25 +48,30 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Blast/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/cdd_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/CDD/cdd_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw/
lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw/clustal_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw/clustal_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/cluster.so
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/data.py
lib/python${MODPY_VERSION}/site-packages/Bio/Cluster/data.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Crystal/
lib/python${MODPY_VERSION}/site-packages/Bio/Crystal/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Crystal/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/DBXRef.py
lib/python${MODPY_VERSION}/site-packages/Bio/DBXRef.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Data/
lib/python${MODPY_VERSION}/site-packages/Bio/Data/CodonTable.py
lib/python${MODPY_VERSION}/site-packages/Bio/Data/CodonTable.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Data/IUPACData.py
@ -70,16 +82,19 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Decode.py
lib/python${MODPY_VERSION}/site-packages/Bio/Decode.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/DocSQL.py
lib/python${MODPY_VERSION}/site-packages/Bio/DocSQL.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/ecell_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/ECell/ecell_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/Config.py
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/Config.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DBIdsClient.py
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DBIdsClient.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DTDs/
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DTDs/LinkOut.dtd
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DTDs/LinkOut.py
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DTDs/LinkOut.pyc
@ -126,6 +141,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/sourcegen.py
lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/sourcegen.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/EZRetrieve.py
lib/python${MODPY_VERSION}/site-packages/Bio/EZRetrieve.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/Applications.py
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/Applications.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/Primer.py
@ -136,18 +152,22 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/primer3_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/primer3_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/primersearch_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Emboss/primersearch_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Encodings/
lib/python${MODPY_VERSION}/site-packages/Bio/Encodings/IUPACEncoding.py
lib/python${MODPY_VERSION}/site-packages/Bio/Encodings/IUPACEncoding.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Encodings/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Encodings/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Enzyme/
lib/python${MODPY_VERSION}/site-packages/Bio/Enzyme/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Enzyme/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/FSSPTools.py
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/FSSPTools.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/fssp_rec.py
lib/python${MODPY_VERSION}/site-packages/Bio/FSSP/fssp_rec.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Fasta/
lib/python${MODPY_VERSION}/site-packages/Bio/Fasta/FastaAlign.py
lib/python${MODPY_VERSION}/site-packages/Bio/Fasta/FastaAlign.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Fasta/__init__.py
@ -158,6 +178,8 @@ lib/python${MODPY_VERSION}/site-packages/Bio/FilteredReader.py
lib/python${MODPY_VERSION}/site-packages/Bio/FilteredReader.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/FormatIO.py
lib/python${MODPY_VERSION}/site-packages/Bio/FormatIO.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/General.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/General.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/GeneralPoint.py
@ -172,6 +194,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Evolver.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Evolver.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/General.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/General.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/Simple.py
@ -180,10 +203,12 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Organism.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Organism.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair/
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair/Stabilizing.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair/Stabilizing.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/Abstract.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/Abstract.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/Diversity.py
@ -196,6 +221,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GA/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/GA/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/GenericTools.py
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/GenericTools.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/__init__.py
@ -204,6 +230,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GFF/binning.py
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/binning.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/easy.py
lib/python${MODPY_VERSION}/site-packages/Bio/GFF/easy.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/LocationParser.py
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/LocationParser.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/Record.py
@ -214,14 +241,17 @@ lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/genbank_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/genbank_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/utils.py
lib/python${MODPY_VERSION}/site-packages/Bio/GenBank/utils.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/geo_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Geo/geo_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Gobase/
lib/python${MODPY_VERSION}/site-packages/Bio/Gobase/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Gobase/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/BasicChromosome.py
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/BasicChromosome.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/Comparative.py
@ -232,6 +262,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/Distribution.py
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/Distribution.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Graphics/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/HMM/
lib/python${MODPY_VERSION}/site-packages/Bio/HMM/DynamicProgramming.py
lib/python${MODPY_VERSION}/site-packages/Bio/HMM/DynamicProgramming.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/HMM/MarkovModel.py
@ -246,38 +277,47 @@ lib/python${MODPY_VERSION}/site-packages/Bio/HotRand.py
lib/python${MODPY_VERSION}/site-packages/Bio/HotRand.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Index.py
lib/python${MODPY_VERSION}/site-packages/Bio/Index.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/intelligenetics_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/InterPro/
lib/python${MODPY_VERSION}/site-packages/Bio/InterPro/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/InterPro/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KDTree/
lib/python${MODPY_VERSION}/site-packages/Bio/KDTree/_KDTree.py
lib/python${MODPY_VERSION}/site-packages/Bio/KDTree/_KDTree.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KDTree/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/KDTree/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/compound_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound/compound_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/enzyme_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/map_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map/map_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/kabat_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Kabat/kabat_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/LocusLink/
lib/python${MODPY_VERSION}/site-packages/Bio/LocusLink/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/LocusLink/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/LocusLink/locus_format.py
@ -292,6 +332,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/MarkupEditor.py
lib/python${MODPY_VERSION}/site-packages/Bio/MarkupEditor.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MaxEntropy.py
lib/python${MODPY_VERSION}/site-packages/Bio/MaxEntropy.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/NLMMedlineXML.py
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/NLMMedlineXML.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/__init__.py
@ -302,6 +343,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Medline/nlmmedline_010319_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/nlmmedline_010319_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/nlmmedline_011101_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/Medline/nlmmedline_011101_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/Input.py
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/Input.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/Record.py
@ -310,6 +352,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/metatool_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool/metatool_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/BaseDB.py
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/BaseDB.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/BerkeleyDB.py
@ -326,6 +369,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/compression.py
lib/python${MODPY_VERSION}/site-packages/Bio/Mindy/compression.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/Scheduler.py
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/Scheduler.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/Task.py
@ -334,6 +378,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/copen.py
lib/python${MODPY_VERSION}/site-packages/Bio/MultiProc/copen.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/ValSeq.py
@ -342,6 +387,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/nbrf_format.py
lib/python${MODPY_VERSION}/site-packages/Bio/NBRF/nbrf_format.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NMR/
lib/python${MODPY_VERSION}/site-packages/Bio/NMR/NOEtools.py
lib/python${MODPY_VERSION}/site-packages/Bio/NMR/NOEtools.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NMR/__init__.py
@ -350,16 +396,20 @@ lib/python${MODPY_VERSION}/site-packages/Bio/NMR/xpktools.py
lib/python${MODPY_VERSION}/site-packages/Bio/NMR/xpktools.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NaiveBayes.py
lib/python${MODPY_VERSION}/site-packages/Bio/NaiveBayes.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Ndb/
lib/python${MODPY_VERSION}/site-packages/Bio/Ndb/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Ndb/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NetCatch.py
lib/python${MODPY_VERSION}/site-packages/Bio/NetCatch.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/Network.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/Network.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Gene/
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Gene/Motif.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Gene/Motif.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Gene/Pattern.py
@ -376,6 +426,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Training.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/Training.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/NeuralNetwork/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Atom.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Atom.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Chain.py
@ -410,15 +461,19 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/StructureBuilder.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/StructureBuilder.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmCIF/
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmCIF/MMCIFlex.so
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmCIF/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/mmCIF/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/ParserSupport.py
lib/python${MODPY_VERSION}/site-packages/Bio/ParserSupport.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Parsers/
lib/python${MODPY_VERSION}/site-packages/Bio/Parsers/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Parsers/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Parsers/spark.py
lib/python${MODPY_VERSION}/site-packages/Bio/Parsers/spark.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/Graph.py
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/Graph.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/Rep/HashSet.py
@ -431,6 +486,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Pathway/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PropertyManager.py
lib/python${MODPY_VERSION}/site-packages/Bio/PropertyManager.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/
lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/Pattern.py
lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/Pattern.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/Prodoc.py
@ -439,6 +495,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Prosite/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PubMed.py
lib/python${MODPY_VERSION}/site-packages/Bio/PubMed.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Rebase/
lib/python${MODPY_VERSION}/site-packages/Bio/Rebase/Rebase.py
lib/python${MODPY_VERSION}/site-packages/Bio/Rebase/Rebase.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Rebase/__init__.py
@ -447,6 +504,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/RecordFile.py
lib/python${MODPY_VERSION}/site-packages/Bio/RecordFile.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/ReseekFile.py
lib/python${MODPY_VERSION}/site-packages/Bio/ReseekFile.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Cla.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Cla.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Des.py
@ -463,6 +521,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Residues.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Residues.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/testCla.py
@ -481,12 +540,14 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/testScop.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/tests/testScop.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SGMLExtractor.py
lib/python${MODPY_VERSION}/site-packages/Bio/SGMLExtractor.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.py
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SVM.py
lib/python${MODPY_VERSION}/site-packages/Bio/SVM.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Saf/
lib/python${MODPY_VERSION}/site-packages/Bio/Saf/Record.py
lib/python${MODPY_VERSION}/site-packages/Bio/Saf/Record.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Saf/__init__.py
@ -499,6 +560,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Seq.py
lib/python${MODPY_VERSION}/site-packages/Bio/Seq.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqFeature.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqFeature.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/
lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/FASTA.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/FASTA.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/__init__.py
@ -507,6 +569,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/generic.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqIO/generic.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqRecord.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqRecord.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/CodonUsage.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/CodonUsage.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/CodonUsageIndices.py
@ -519,6 +582,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/ProtParamData.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/ProtParamData.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SeqUtils/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Sequencing/
lib/python${MODPY_VERSION}/site-packages/Bio/Sequencing/Ace.py
lib/python${MODPY_VERSION}/site-packages/Bio/Sequencing/Ace.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Sequencing/Phd.py
@ -529,12 +593,14 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Std.py
lib/python${MODPY_VERSION}/site-packages/Bio/Std.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/StdHandler.py
lib/python${MODPY_VERSION}/site-packages/Bio/StdHandler.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/FreqTable.py
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/FreqTable.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/MatrixInfo.py
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/MatrixInfo.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SubsMat/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SwissProt/
lib/python${MODPY_VERSION}/site-packages/Bio/SwissProt/KeyWList.py
lib/python${MODPY_VERSION}/site-packages/Bio/SwissProt/KeyWList.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SwissProt/SProt.py
@ -545,8 +611,10 @@ lib/python${MODPY_VERSION}/site-packages/Bio/Transcribe.py
lib/python${MODPY_VERSION}/site-packages/Bio/Transcribe.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Translate.py
lib/python${MODPY_VERSION}/site-packages/Bio/Translate.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/UniGene/
lib/python${MODPY_VERSION}/site-packages/Bio/UniGene/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/UniGene/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/ExPASy.py
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/ExPASy.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/InterPro.py
@ -557,6 +625,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/WWW/SCOP.py
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/SCOP.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/WWW/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Wise/
lib/python${MODPY_VERSION}/site-packages/Bio/Wise/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/Wise/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/Wise/dnal.py
@ -569,10 +638,13 @@ lib/python${MODPY_VERSION}/site-packages/Bio/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/biblio.py
lib/python${MODPY_VERSION}/site-packages/Bio/biblio.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/builders/
lib/python${MODPY_VERSION}/site-packages/Bio/builders/Search/
lib/python${MODPY_VERSION}/site-packages/Bio/builders/Search/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/builders/Search/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/builders/Search/search.py
lib/python${MODPY_VERSION}/site-packages/Bio/builders/Search/search.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/builders/SeqRecord/
lib/python${MODPY_VERSION}/site-packages/Bio/builders/SeqRecord/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/builders/SeqRecord/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/builders/SeqRecord/sequence.py
@ -585,6 +657,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/cdistance.so
lib/python${MODPY_VERSION}/site-packages/Bio/ckMeans.so
lib/python${MODPY_VERSION}/site-packages/Bio/clistfns.so
lib/python${MODPY_VERSION}/site-packages/Bio/cmathfns.so
lib/python${MODPY_VERSION}/site-packages/Bio/config/
lib/python${MODPY_VERSION}/site-packages/Bio/config/DBRegistry.py
lib/python${MODPY_VERSION}/site-packages/Bio/config/DBRegistry.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/config/FormatRegistry.py
@ -603,6 +676,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/cpairwise2.so
lib/python${MODPY_VERSION}/site-packages/Bio/crc.py
lib/python${MODPY_VERSION}/site-packages/Bio/crc.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/cstringfns.so
lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/
lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/_support.py
@ -623,8 +697,10 @@ lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/swissprot.py
lib/python${MODPY_VERSION}/site-packages/Bio/dbdefs/swissprot.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/distance.py
lib/python${MODPY_VERSION}/site-packages/Bio/distance.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/ncbiblast.py
@ -633,6 +709,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/wublast.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast/wublast.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blocks.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blocks.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/embl/
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/embl/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/embl/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/embl/embl65.py
@ -643,6 +720,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/expressions/genbank.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/genbank.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/hmmpfam.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/hmmpfam.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/speclist.py
@ -651,6 +729,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/sprot38.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/sprot38.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/sprot40.py
lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot/sprot40.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/formatdefs/
lib/python${MODPY_VERSION}/site-packages/Bio/formatdefs/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/formatdefs/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/formatdefs/embl.py
@ -684,6 +763,8 @@ lib/python${MODPY_VERSION}/site-packages/Bio/triefind.py
lib/python${MODPY_VERSION}/site-packages/Bio/triefind.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/utils.py
lib/python${MODPY_VERSION}/site-packages/Bio/utils.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/writers/
lib/python${MODPY_VERSION}/site-packages/Bio/writers/SeqRecord/
lib/python${MODPY_VERSION}/site-packages/Bio/writers/SeqRecord/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/writers/SeqRecord/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/writers/SeqRecord/empty.py
@ -694,6 +775,7 @@ lib/python${MODPY_VERSION}/site-packages/Bio/writers/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/writers/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/xkMeans.py
lib/python${MODPY_VERSION}/site-packages/Bio/xkMeans.pyc
lib/python${MODPY_VERSION}/site-packages/BioSQL/
lib/python${MODPY_VERSION}/site-packages/BioSQL/BioSeq.py
lib/python${MODPY_VERSION}/site-packages/BioSQL/BioSeq.pyc
lib/python${MODPY_VERSION}/site-packages/BioSQL/BioSeqDatabase.py
@ -704,6 +786,7 @@ lib/python${MODPY_VERSION}/site-packages/BioSQL/Loader.py
lib/python${MODPY_VERSION}/site-packages/BioSQL/Loader.pyc
lib/python${MODPY_VERSION}/site-packages/BioSQL/__init__.py
lib/python${MODPY_VERSION}/site-packages/BioSQL/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Martel/
lib/python${MODPY_VERSION}/site-packages/Martel/Dispatch.py
lib/python${MODPY_VERSION}/site-packages/Martel/Dispatch.pyc
lib/python${MODPY_VERSION}/site-packages/Martel/Expression.py
@ -734,12 +817,16 @@ lib/python${MODPY_VERSION}/site-packages/Martel/optimize.py
lib/python${MODPY_VERSION}/site-packages/Martel/optimize.pyc
@comment lib/python${MODPY_VERSION}/site-packages/Martel/setup.py
@comment lib/python${MODPY_VERSION}/site-packages/Martel/setup.pyc
share/examples/py-biopython/
share/examples/py-biopython/Amino/
share/examples/py-biopython/Amino/aster.pro
share/examples/py-biopython/Amino/loveliesbleeding.pro
share/examples/py-biopython/Amino/rose.pro
share/examples/py-biopython/Amino/rosemary.pro
share/examples/py-biopython/BioSQL/
share/examples/py-biopython/BioSQL/biosqldb-mysql.sql
share/examples/py-biopython/BioSQL/biosqldb-pg.sql
share/examples/py-biopython/Blast/
share/examples/py-biopython/Blast/README
share/examples/py-biopython/Blast/bt001
share/examples/py-biopython/Blast/bt002
@ -810,35 +897,45 @@ share/examples/py-biopython/Blast/bt067
share/examples/py-biopython/Blast/bt068
share/examples/py-biopython/Blast/bt069
share/examples/py-biopython/Blast/bt070
share/examples/py-biopython/CDD/
share/examples/py-biopython/CDD/pfam00035.htm
share/examples/py-biopython/CDD/pfam01356.htm
share/examples/py-biopython/CDD/pfam02903.htm
share/examples/py-biopython/CDD/smart00499.htm
share/examples/py-biopython/CDD/smart00505.htm
share/examples/py-biopython/Clustalw/
share/examples/py-biopython/Clustalw/cw02.aln
share/examples/py-biopython/Clustalw/opuntia.aln
share/examples/py-biopython/CodonUsage/
share/examples/py-biopython/CodonUsage/.DS_Store
share/examples/py-biopython/CodonUsage/HighlyExpressedGenes.txt
share/examples/py-biopython/ECell/
share/examples/py-biopython/ECell/sample.txt
share/examples/py-biopython/Emboss/
share/examples/py-biopython/Emboss/bac_find.primer3
share/examples/py-biopython/Emboss/bac_find.psearch
share/examples/py-biopython/Emboss/cds_forward.primer3
share/examples/py-biopython/Emboss/cds_reverse.primer3
share/examples/py-biopython/Emboss/short.primer3
share/examples/py-biopython/Enzymes/
share/examples/py-biopython/Enzymes/lactate.txt
share/examples/py-biopython/Enzymes/lipoprotein.txt
share/examples/py-biopython/Enzymes/proline.txt
share/examples/py-biopython/Enzymes/valine.txt
share/examples/py-biopython/FSSP/
share/examples/py-biopython/FSSP/1cnv.fssp
share/examples/py-biopython/Fasta/
share/examples/py-biopython/Fasta/README
share/examples/py-biopython/Fasta/f001
share/examples/py-biopython/Fasta/f002
share/examples/py-biopython/Fasta/fa01
share/examples/py-biopython/GFF/
share/examples/py-biopython/GFF/NC_001422.gbk
share/examples/py-biopython/GFF/NC_001802.fna
share/examples/py-biopython/GFF/NC_001802lc.fna
share/examples/py-biopython/GFF/NC_001802x.fna
share/examples/py-biopython/GFF/multi.fna
share/examples/py-biopython/GenBank/
share/examples/py-biopython/GenBank/NT_019265.gb
share/examples/py-biopython/GenBank/arab1.gb
share/examples/py-biopython/GenBank/blank_seq.gb
@ -852,11 +949,13 @@ share/examples/py-biopython/GenBank/one_of.gb
share/examples/py-biopython/GenBank/origin_line.gb
share/examples/py-biopython/GenBank/pri1.gb
share/examples/py-biopython/GenBank/protein_refseq.gb
share/examples/py-biopython/Geo/
share/examples/py-biopython/Geo/GSE16.txt
share/examples/py-biopython/Geo/GSM645.txt
share/examples/py-biopython/Geo/GSM691.txt
share/examples/py-biopython/Geo/GSM700.txt
share/examples/py-biopython/Geo/GSM804.txt
share/examples/py-biopython/Gobase/
share/examples/py-biopython/Gobase/E15449.htm
share/examples/py-biopython/Gobase/E15449.txt
share/examples/py-biopython/Gobase/G405967.htm
@ -869,32 +968,39 @@ share/examples/py-biopython/Gobase/P6513764.htm
share/examples/py-biopython/Gobase/Pt6513764.txt
share/examples/py-biopython/Gobase/S4323016.htm
share/examples/py-biopython/Gobase/S4323016.txt
share/examples/py-biopython/Graphics/
share/examples/py-biopython/Graphics/README
share/examples/py-biopython/IntelliGenetics/
share/examples/py-biopython/IntelliGenetics/TAT_mase-nuc.txt
share/examples/py-biopython/IntelliGenetics/TAT_mase_nuc.txt
share/examples/py-biopython/IntelliGenetics/VIF_mase-pro.txt
share/examples/py-biopython/IntelliGenetics/vpu_nucaligned.txt
share/examples/py-biopython/InterPro/
share/examples/py-biopython/InterPro/IPR001064.htm
share/examples/py-biopython/InterPro/IPR001171.htm
share/examples/py-biopython/InterPro/IPR001391.htm
share/examples/py-biopython/InterPro/IPR001442.htm
share/examples/py-biopython/InterPro/IPR001571.htm
share/examples/py-biopython/KEGG/
share/examples/py-biopython/KEGG/compound.irregular
share/examples/py-biopython/KEGG/compound.sample
share/examples/py-biopython/KEGG/enzyme.irregular
share/examples/py-biopython/KEGG/enzyme.sample
share/examples/py-biopython/KEGG/map00950.rea
share/examples/py-biopython/Kabat/
share/examples/py-biopython/Kabat/k000245.txt
share/examples/py-biopython/Kabat/k000255.txt
share/examples/py-biopython/Kabat/k000347.txt
share/examples/py-biopython/Kabat/k000397.txt
share/examples/py-biopython/Kabat/k000456.txt
share/examples/py-biopython/LocusLink/
share/examples/py-biopython/LocusLink/LL_block
share/examples/py-biopython/LocusLink/Locus14789.htm
share/examples/py-biopython/LocusLink/Locus16590.htm
share/examples/py-biopython/LocusLink/Locus2523.htm
share/examples/py-biopython/LocusLink/Locus5797.htm
share/examples/py-biopython/LocusLink/Locus6373.htm
share/examples/py-biopython/MetaTool/
share/examples/py-biopython/MetaTool/Example3.txt
share/examples/py-biopython/MetaTool/Example4.txt
share/examples/py-biopython/MetaTool/Example6.txt
@ -920,10 +1026,12 @@ share/examples/py-biopython/MetaTool/example2.txt
share/examples/py-biopython/MetaTool/meta.out
share/examples/py-biopython/MetaTool/meta2.out
share/examples/py-biopython/MetaTool/meta9.out
share/examples/py-biopython/NBRF/
share/examples/py-biopython/NBRF/B_nuc.pir
share/examples/py-biopython/NBRF/Cw_prot.pir
share/examples/py-biopython/NBRF/DMA_nuc.pir
share/examples/py-biopython/NBRF/DMB_prot.pir
share/examples/py-biopython/Ndb/
share/examples/py-biopython/Ndb/AH0014.htm
share/examples/py-biopython/Ndb/PD0072.htm
share/examples/py-biopython/Ndb/PD0080.htm
@ -934,9 +1042,11 @@ share/examples/py-biopython/Ndb/PR0007.htm
share/examples/py-biopython/Ndb/TRNA05.htm
share/examples/py-biopython/Ndb/URX035.htm
share/examples/py-biopython/Ndb/ZHF026.htm
share/examples/py-biopython/NeuralNetwork/
share/examples/py-biopython/NeuralNetwork/enolase.fasta
share/examples/py-biopython/NeuralNetwork/patternio.txt
share/examples/py-biopython/NeuralNetwork/repeat.fasta
share/examples/py-biopython/Nucleic/
share/examples/py-biopython/Nucleic/centaurea.nu
share/examples/py-biopython/Nucleic/elderberry.nu
share/examples/py-biopython/Nucleic/lavender.nu
@ -944,7 +1054,10 @@ share/examples/py-biopython/Nucleic/lupine.nu
share/examples/py-biopython/Nucleic/phlox.nu
share/examples/py-biopython/Nucleic/sweetpea.nu
share/examples/py-biopython/Nucleic/wisteria.nu
share/examples/py-biopython/PDB/
share/examples/py-biopython/PDB/a_structure.pdb
share/examples/py-biopython/Prosite/
share/examples/py-biopython/Prosite/Doc/
share/examples/py-biopython/Prosite/Doc/pdoc00100.htm
share/examples/py-biopython/Prosite/Doc/pdoc00100.txt
share/examples/py-biopython/Prosite/Doc/pdoc00113.htm
@ -985,6 +1098,7 @@ share/examples/py-biopython/Prosite/ps00488.txt
share/examples/py-biopython/Prosite/ps00546.txt
share/examples/py-biopython/Prosite/ps00812.txt
share/examples/py-biopython/Prosite/ps01213.txt
share/examples/py-biopython/Rebase/
share/examples/py-biopython/Rebase/bamii.htm
share/examples/py-biopython/Rebase/bamii.txt
share/examples/py-biopython/Rebase/cac81.htm
@ -997,16 +1111,20 @@ share/examples/py-biopython/Rebase/pvuii.htm
share/examples/py-biopython/Rebase/pvuii.txt
share/examples/py-biopython/Rebase/taqi.htm
share/examples/py-biopython/Rebase/taqi.txt
share/examples/py-biopython/Registry/
share/examples/py-biopython/Registry/EDD_RAT.dat
share/examples/py-biopython/Registry/bt001
share/examples/py-biopython/Registry/seqs.fasta
share/examples/py-biopython/Saf/
share/examples/py-biopython/Saf/saf1.txt
share/examples/py-biopython/SubsMat/
share/examples/py-biopython/SubsMat/aaDistrib.txt
share/examples/py-biopython/SubsMat/acc_rep_mat.pik
share/examples/py-biopython/SubsMat/protein_count.txt
share/examples/py-biopython/SubsMat/protein_freq.txt
share/examples/py-biopython/SubsMat/redAADistrib.txt
share/examples/py-biopython/SubsMat/redAltAADistrib.txt
share/examples/py-biopython/SwissProt/
share/examples/py-biopython/SwissProt/README
share/examples/py-biopython/SwissProt/kw001
share/examples/py-biopython/SwissProt/kw002
@ -1024,6 +1142,7 @@ share/examples/py-biopython/SwissProt/sp011
share/examples/py-biopython/SwissProt/sp012
share/examples/py-biopython/SwissProt/sp013
share/examples/py-biopython/SwissProt/sp014
share/examples/py-biopython/UniGene/
share/examples/py-biopython/UniGene/Bt145.htm
share/examples/py-biopython/UniGene/Bt59.htm
share/examples/py-biopython/UniGene/Dr00010.htm
@ -1036,6 +1155,7 @@ share/examples/py-biopython/UniGene/Mm28919.htm
share/examples/py-biopython/UniGene/Mm421.htm
share/examples/py-biopython/UniGene/Rn20.htm
share/examples/py-biopython/UniGene/Rn35.htm
share/examples/py-biopython/WIT/
share/examples/py-biopython/WIT/ec2137.htm
share/examples/py-biopython/WIT/ec2137.txt
share/examples/py-biopython/WIT/ec2214.htm
@ -1056,11 +1176,13 @@ share/examples/py-biopython/WIT/ec4416.htm
share/examples/py-biopython/WIT/ec4416.txt
share/examples/py-biopython/WIT/ec6344.htm
share/examples/py-biopython/WIT/ec6344.txt
share/examples/py-biopython/Wise/
share/examples/py-biopython/Wise/human_114_g01_exons.fna_01
share/examples/py-biopython/Wise/human_114_g02_exons.fna_01
share/examples/py-biopython/dump
share/examples/py-biopython/martel_support.py
share/examples/py-biopython/martel_support.pyc
share/examples/py-biopython/output/
share/examples/py-biopython/output/test_BioSQL
share/examples/py-biopython/output/test_Cluster
share/examples/py-biopython/output/test_CodonUsage
@ -1295,125 +1417,3 @@ share/examples/py-biopython/unittest.py
share/examples/py-biopython/unittest.pyc
share/examples/py-biopython/unittestgui.py
share/examples/py-biopython/unittestgui.pyc
@dirrm share/examples/py-biopython/output
@dirrm share/examples/py-biopython/Wise
@dirrm share/examples/py-biopython/WIT
@dirrm share/examples/py-biopython/UniGene
@dirrm share/examples/py-biopython/SwissProt
@dirrm share/examples/py-biopython/SubsMat
@dirrm share/examples/py-biopython/Saf
@dirrm share/examples/py-biopython/Registry
@dirrm share/examples/py-biopython/Rebase
@dirrm share/examples/py-biopython/Prosite/Doc
@dirrm share/examples/py-biopython/Prosite
@dirrm share/examples/py-biopython/PDB
@dirrm share/examples/py-biopython/Nucleic
@dirrm share/examples/py-biopython/NeuralNetwork
@dirrm share/examples/py-biopython/Ndb
@dirrm share/examples/py-biopython/NBRF
@dirrm share/examples/py-biopython/MetaTool
@dirrm share/examples/py-biopython/LocusLink
@dirrm share/examples/py-biopython/Kabat
@dirrm share/examples/py-biopython/KEGG
@dirrm share/examples/py-biopython/InterPro
@dirrm share/examples/py-biopython/IntelliGenetics
@dirrm share/examples/py-biopython/Graphics
@dirrm share/examples/py-biopython/Gobase
@dirrm share/examples/py-biopython/Geo
@dirrm share/examples/py-biopython/GenBank
@dirrm share/examples/py-biopython/GFF
@dirrm share/examples/py-biopython/Fasta
@dirrm share/examples/py-biopython/FSSP
@dirrm share/examples/py-biopython/Enzymes
@dirrm share/examples/py-biopython/Emboss
@dirrm share/examples/py-biopython/ECell
@dirrm share/examples/py-biopython/CodonUsage
@dirrm share/examples/py-biopython/Clustalw
@dirrm share/examples/py-biopython/CDD
@dirrm share/examples/py-biopython/Blast
@dirrm share/examples/py-biopython/BioSQL
@dirrm share/examples/py-biopython/Amino
@dirrm share/examples/py-biopython
@dirrm lib/python${MODPY_VERSION}/site-packages/Martel
@dirrm lib/python${MODPY_VERSION}/site-packages/BioSQL
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/writers/SeqRecord
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/writers
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/formatdefs
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/expressions/swissprot
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/expressions/embl
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/expressions/blast
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/expressions
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@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/builders/SeqRecord
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@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/MetaTool
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Medline
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/LocusLink
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Kabat
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Map
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Enzyme
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/KEGG/Compound
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/KEGG
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/KDTree
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/InterPro
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/IntelliGenetics
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/HMM
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Graphics
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Gobase
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Geo
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GenBank
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GFF
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GA/Selection
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GA/Repair
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GA/Mutation
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GA/Crossover
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/GA
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Fasta
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/FSSP
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Enzyme
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Encodings
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Emboss
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/EUtils/DTDs
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/EUtils
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/ECell
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Data
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Crystal
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Cluster
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Clustalw
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/CDD
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Blast
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Application
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Alphabet
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/AlignAce
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Align
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio/Ais
@dirrm lib/python${MODPY_VERSION}/site-packages/Bio