drop RCS Ids
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naddy
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279462e7ea
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1c2ff4f353
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# $OpenBSD: Makefile,v 1.22 2020/07/03 21:44:31 sthen Exp $
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COMMENT= perl interface to the ACEDB database
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DISTNAME= AcePerl-1.92
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$OpenBSD: patch-Makefile_PL,v 1.2 2008/09/23 20:57:20 jasper Exp $
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--- Makefile.PL.orig Mon Sep 22 10:22:31 2008
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+++ Makefile.PL Mon Sep 22 10:35:24 2008
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@@ -10,7 +10,7 @@ while (!$choice) {
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@comment $OpenBSD: PFRAG.opt,v 1.2 2014/06/14 10:34:44 sthen Exp $
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${P5ACE}/Ace/Freesubs.pm
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${P5ACE}/auto/Ace/Freesubs/
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@comment ${P5ACE}/auto/Ace/Freesubs/Freesubs.bs
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@comment $OpenBSD: PLIST,v 1.4 2010/12/18 00:19:51 jasper Exp $
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bin/ace.pl
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${P5ACE}/Ace/
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${P5ACE}/Ace.pm
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# $OpenBSD: Makefile,v 1.23 2021/02/07 14:49:43 benoit Exp $
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COMMENT= perl tools for bioinformatics
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DISTNAME= BioPerl-1.7.8
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@comment $OpenBSD: PLIST,v 1.7 2021/02/07 14:49:43 benoit Exp $
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bin/bp_aacomp
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bin/bp_bioflat_index
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bin/bp_biogetseq
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# $OpenBSD: Makefile,v 1.16 2020/01/26 11:14:30 jasper Exp $
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PORTROACH= ignore:1
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COMMENT= European Molecular Biology Open Software Suite
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@comment $OpenBSD: PLIST,v 1.6 2019/11/11 17:35:11 jca Exp $
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include/ajacd.h
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include/ajalign.h
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include/ajarch.h
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# $OpenBSD: Makefile,v 1.3 2019/07/12 20:43:43 sthen Exp $
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COMMENT = profile HMMs for biological sequence analysis
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V = 3.1b2
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@ -1,2 +1 @@
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@comment $OpenBSD: PFRAG.amd64,v 1.1 2016/11/25 20:42:57 sthen Exp $
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include/impl_sse.h
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@comment $OpenBSD: PLIST,v 1.2 2016/11/25 20:42:57 sthen Exp $
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@bin bin/alimask
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@bin bin/hmmalign
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@bin bin/hmmbuild
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# $OpenBSD: Makefile,v 1.15 2020/08/25 23:54:01 cwen Exp $
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COMMENT = regular expression-based parser for NCBI Entrez Gene
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DISTNAME = Bio-ASN1-EntrezGene-1.73
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@comment $OpenBSD: PLIST,v 1.4 2020/08/25 23:54:02 cwen Exp $
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@conflict bioperl-<1.7
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${P5SITE}/Bio/ASN1/
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${P5SITE}/Bio/ASN1/EntrezGene/
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# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:43:06 cwen Exp $
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COMMENT = cluster modules for BioPerl
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DISTNAME = Bio-Cluster-1.7.3
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@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:43:06 cwen Exp $
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@conflict bioperl-<1.7
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${P5SITE}/Bio/
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${P5SITE}/Bio/Cluster/
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# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:37:52 cwen Exp $
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COMMENT = database object interface for EMBL entry retrieval
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DISTNAME = Bio-DB-EMBL-1.7.4
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@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:37:52 cwen Exp $
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@conflict bioperl-<1.7
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${P5SITE}/Bio/DB/EMBL.pm
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@man man/man3p/Bio::DB::EMBL.3p
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# $OpenBSD: Makefile,v 1.2 2021/07/12 09:01:59 benoit Exp $
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COMMENT = collection of routines useful for queries to NCBI databases
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DISTNAME = Bio-DB-NCBIHelper-1.7.7
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@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:39:36 cwen Exp $
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@conflict bioperl-<1.7
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bin/bp_biofetch_genbank_proxy
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bin/bp_download_query_genbank
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# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:41:26 cwen Exp $
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COMMENT = bioperl variation-related functionality
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DISTNAME = Bio-Variation-1.7.5
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@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:41:26 cwen Exp $
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@conflict bioperl-<1.7
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bin/bp_flanks
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${P5SITE}/Bio/Variation/
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# $OpenBSD: Makefile,v 1.34 2021/11/02 00:00:14 sthen Exp $
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COMMENT = Python tools for computational molecular biology
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MODPY_EGG_VERSION = 1.79
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$OpenBSD: patch-Tests_run_tests_py,v 1.5 2020/10/25 18:12:58 martin Exp $
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Index: Tests/run_tests.py
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--- Tests/run_tests.py.orig
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+++ Tests/run_tests.py
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@comment $OpenBSD: PLIST,v 1.12 2021/06/23 10:46:49 martin Exp $
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lib/python${MODPY_VERSION}/
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lib/python${MODPY_VERSION}/site-packages/
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lib/python${MODPY_VERSION}/site-packages/Bio/
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