diff --git a/biology/AcePerl/Makefile b/biology/AcePerl/Makefile index 4eb6510e11a..2ea9b8dd21a 100644 --- a/biology/AcePerl/Makefile +++ b/biology/AcePerl/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.22 2020/07/03 21:44:31 sthen Exp $ - COMMENT= perl interface to the ACEDB database DISTNAME= AcePerl-1.92 diff --git a/biology/AcePerl/patches/patch-Makefile_PL b/biology/AcePerl/patches/patch-Makefile_PL index 017e3a0d226..d494882122e 100644 --- a/biology/AcePerl/patches/patch-Makefile_PL +++ b/biology/AcePerl/patches/patch-Makefile_PL @@ -1,4 +1,3 @@ -$OpenBSD: patch-Makefile_PL,v 1.2 2008/09/23 20:57:20 jasper Exp $ --- Makefile.PL.orig Mon Sep 22 10:22:31 2008 +++ Makefile.PL Mon Sep 22 10:35:24 2008 @@ -10,7 +10,7 @@ while (!$choice) { diff --git a/biology/AcePerl/pkg/PFRAG.opt b/biology/AcePerl/pkg/PFRAG.opt index 0dc63d10c96..900c91f2291 100644 --- a/biology/AcePerl/pkg/PFRAG.opt +++ b/biology/AcePerl/pkg/PFRAG.opt @@ -1,4 +1,3 @@ -@comment $OpenBSD: PFRAG.opt,v 1.2 2014/06/14 10:34:44 sthen Exp $ ${P5ACE}/Ace/Freesubs.pm ${P5ACE}/auto/Ace/Freesubs/ @comment ${P5ACE}/auto/Ace/Freesubs/Freesubs.bs diff --git a/biology/AcePerl/pkg/PLIST b/biology/AcePerl/pkg/PLIST index 44743a57cdd..b763157d1da 100644 --- a/biology/AcePerl/pkg/PLIST +++ b/biology/AcePerl/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.4 2010/12/18 00:19:51 jasper Exp $ bin/ace.pl ${P5ACE}/Ace/ ${P5ACE}/Ace.pm diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile index b8659d8024c..59d1e647654 100644 --- a/biology/bioperl/Makefile +++ b/biology/bioperl/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.23 2021/02/07 14:49:43 benoit Exp $ - COMMENT= perl tools for bioinformatics DISTNAME= BioPerl-1.7.8 diff --git a/biology/bioperl/pkg/PLIST b/biology/bioperl/pkg/PLIST index e22a5f3e387..097160db9d9 100644 --- a/biology/bioperl/pkg/PLIST +++ b/biology/bioperl/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.7 2021/02/07 14:49:43 benoit Exp $ bin/bp_aacomp bin/bp_bioflat_index bin/bp_biogetseq diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index 3e559880f62..939deb84619 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.16 2020/01/26 11:14:30 jasper Exp $ - PORTROACH= ignore:1 COMMENT= European Molecular Biology Open Software Suite diff --git a/biology/emboss/pkg/PLIST b/biology/emboss/pkg/PLIST index 20e2fd64d5f..e422c0facd6 100644 --- a/biology/emboss/pkg/PLIST +++ b/biology/emboss/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.6 2019/11/11 17:35:11 jca Exp $ include/ajacd.h include/ajalign.h include/ajarch.h diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index a4f7a50071b..fb3f679a9ac 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.3 2019/07/12 20:43:43 sthen Exp $ - COMMENT = profile HMMs for biological sequence analysis V = 3.1b2 diff --git a/biology/hmmer/pkg/PFRAG.amd64 b/biology/hmmer/pkg/PFRAG.amd64 index 0b07191f119..181d4e12dd8 100644 --- a/biology/hmmer/pkg/PFRAG.amd64 +++ b/biology/hmmer/pkg/PFRAG.amd64 @@ -1,2 +1 @@ -@comment $OpenBSD: PFRAG.amd64,v 1.1 2016/11/25 20:42:57 sthen Exp $ include/impl_sse.h diff --git a/biology/hmmer/pkg/PLIST b/biology/hmmer/pkg/PLIST index b910b4123f6..a7c3ea6741c 100644 --- a/biology/hmmer/pkg/PLIST +++ b/biology/hmmer/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.2 2016/11/25 20:42:57 sthen Exp $ @bin bin/alimask @bin bin/hmmalign @bin bin/hmmbuild diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile index 2a6a36100ac..6e77cd7d721 100644 --- a/biology/p5-Bio-ASN1-EntrezGene/Makefile +++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.15 2020/08/25 23:54:01 cwen Exp $ - COMMENT = regular expression-based parser for NCBI Entrez Gene DISTNAME = Bio-ASN1-EntrezGene-1.73 diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg/PLIST b/biology/p5-Bio-ASN1-EntrezGene/pkg/PLIST index 95a9c0d5899..4c6813efdd1 100644 --- a/biology/p5-Bio-ASN1-EntrezGene/pkg/PLIST +++ b/biology/p5-Bio-ASN1-EntrezGene/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.4 2020/08/25 23:54:02 cwen Exp $ @conflict bioperl-<1.7 ${P5SITE}/Bio/ASN1/ ${P5SITE}/Bio/ASN1/EntrezGene/ diff --git a/biology/p5-Bio-Cluster/Makefile b/biology/p5-Bio-Cluster/Makefile index 6dfd2818ad7..cd9dcf172be 100644 --- a/biology/p5-Bio-Cluster/Makefile +++ b/biology/p5-Bio-Cluster/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:43:06 cwen Exp $ - COMMENT = cluster modules for BioPerl DISTNAME = Bio-Cluster-1.7.3 diff --git a/biology/p5-Bio-Cluster/pkg/PLIST b/biology/p5-Bio-Cluster/pkg/PLIST index c18eded7f3d..4285f96a1ec 100644 --- a/biology/p5-Bio-Cluster/pkg/PLIST +++ b/biology/p5-Bio-Cluster/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:43:06 cwen Exp $ @conflict bioperl-<1.7 ${P5SITE}/Bio/ ${P5SITE}/Bio/Cluster/ diff --git a/biology/p5-Bio-DB-EMBL/Makefile b/biology/p5-Bio-DB-EMBL/Makefile index 2e13970e589..fcdda28d469 100644 --- a/biology/p5-Bio-DB-EMBL/Makefile +++ b/biology/p5-Bio-DB-EMBL/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:37:52 cwen Exp $ - COMMENT = database object interface for EMBL entry retrieval DISTNAME = Bio-DB-EMBL-1.7.4 diff --git a/biology/p5-Bio-DB-EMBL/pkg/PLIST b/biology/p5-Bio-DB-EMBL/pkg/PLIST index 3ecd79164cd..ba59a4e3ffc 100644 --- a/biology/p5-Bio-DB-EMBL/pkg/PLIST +++ b/biology/p5-Bio-DB-EMBL/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:37:52 cwen Exp $ @conflict bioperl-<1.7 ${P5SITE}/Bio/DB/EMBL.pm @man man/man3p/Bio::DB::EMBL.3p diff --git a/biology/p5-Bio-DB-NCBIHelper/Makefile b/biology/p5-Bio-DB-NCBIHelper/Makefile index 256be6fdcb8..cd15cceb8d1 100644 --- a/biology/p5-Bio-DB-NCBIHelper/Makefile +++ b/biology/p5-Bio-DB-NCBIHelper/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.2 2021/07/12 09:01:59 benoit Exp $ - COMMENT = collection of routines useful for queries to NCBI databases DISTNAME = Bio-DB-NCBIHelper-1.7.7 diff --git a/biology/p5-Bio-DB-NCBIHelper/pkg/PLIST b/biology/p5-Bio-DB-NCBIHelper/pkg/PLIST index d066ad2df11..dae73093699 100644 --- a/biology/p5-Bio-DB-NCBIHelper/pkg/PLIST +++ b/biology/p5-Bio-DB-NCBIHelper/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:39:36 cwen Exp $ @conflict bioperl-<1.7 bin/bp_biofetch_genbank_proxy bin/bp_download_query_genbank diff --git a/biology/p5-Bio-Variation/Makefile b/biology/p5-Bio-Variation/Makefile index cd7fdfdd60d..6aa08f8362f 100644 --- a/biology/p5-Bio-Variation/Makefile +++ b/biology/p5-Bio-Variation/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.1.1.1 2020/08/25 23:41:26 cwen Exp $ - COMMENT = bioperl variation-related functionality DISTNAME = Bio-Variation-1.7.5 diff --git a/biology/p5-Bio-Variation/pkg/PLIST b/biology/p5-Bio-Variation/pkg/PLIST index 6305bf7b50c..7b7b8835014 100644 --- a/biology/p5-Bio-Variation/pkg/PLIST +++ b/biology/p5-Bio-Variation/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.1.1.1 2020/08/25 23:41:26 cwen Exp $ @conflict bioperl-<1.7 bin/bp_flanks ${P5SITE}/Bio/Variation/ diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 61298fd1a83..59ea702c9d3 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -1,5 +1,3 @@ -# $OpenBSD: Makefile,v 1.34 2021/11/02 00:00:14 sthen Exp $ - COMMENT = Python tools for computational molecular biology MODPY_EGG_VERSION = 1.79 diff --git a/biology/py-biopython/patches/patch-Tests_run_tests_py b/biology/py-biopython/patches/patch-Tests_run_tests_py index 2dc2fe14d69..5a749925b07 100644 --- a/biology/py-biopython/patches/patch-Tests_run_tests_py +++ b/biology/py-biopython/patches/patch-Tests_run_tests_py @@ -1,4 +1,3 @@ -$OpenBSD: patch-Tests_run_tests_py,v 1.5 2020/10/25 18:12:58 martin Exp $ Index: Tests/run_tests.py --- Tests/run_tests.py.orig +++ Tests/run_tests.py diff --git a/biology/py-biopython/pkg/PLIST b/biology/py-biopython/pkg/PLIST index 889d95af855..82ce4352daa 100644 --- a/biology/py-biopython/pkg/PLIST +++ b/biology/py-biopython/pkg/PLIST @@ -1,4 +1,3 @@ -@comment $OpenBSD: PLIST,v 1.12 2021/06/23 10:46:49 martin Exp $ lib/python${MODPY_VERSION}/ lib/python${MODPY_VERSION}/site-packages/ lib/python${MODPY_VERSION}/site-packages/Bio/