1144 lines
42 KiB
Plaintext
1144 lines
42 KiB
Plaintext
bin/bp_aacomp
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bin/bp_bioflat_index
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bin/bp_biogetseq
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bin/bp_dbsplit
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bin/bp_extract_feature_seq
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bin/bp_fastam9_to_table
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bin/bp_fetch
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bin/bp_filter_search
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bin/bp_find-blast-matches
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bin/bp_gccalc
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bin/bp_genbank2gff3
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bin/bp_index
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bin/bp_local_taxonomydb_query
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bin/bp_make_mrna_protein
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bin/bp_mask_by_search
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bin/bp_mrtrans
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bin/bp_mutate
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bin/bp_nexus2nh
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bin/bp_nrdb
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bin/bp_oligo_count
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bin/bp_process_gadfly
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bin/bp_process_sgd
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bin/bp_revtrans-motif
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bin/bp_search2alnblocks
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bin/bp_search2gff
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bin/bp_search2table
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bin/bp_search2tribe
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bin/bp_seq_length
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bin/bp_seqconvert
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bin/bp_seqcut
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bin/bp_seqpart
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bin/bp_seqret
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bin/bp_seqretsplit
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bin/bp_split_seq
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bin/bp_sreformat
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bin/bp_taxid4species
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bin/bp_taxonomy2tree
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bin/bp_translate_seq
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bin/bp_tree2pag
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bin/bp_unflatten_seq
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${P5SITE}/Bio/
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${P5SITE}/Bio/Align/
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${P5SITE}/Bio/Align/AlignI.pm
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${P5SITE}/Bio/Align/DNAStatistics.pm
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${P5SITE}/Bio/Align/PairwiseStatistics.pm
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${P5SITE}/Bio/Align/ProteinStatistics.pm
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${P5SITE}/Bio/Align/StatisticsI.pm
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${P5SITE}/Bio/Align/Utilities.pm
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${P5SITE}/Bio/AlignIO/
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${P5SITE}/Bio/AlignIO.pm
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${P5SITE}/Bio/AlignIO/Handler/
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${P5SITE}/Bio/AlignIO/Handler/GenericAlignHandler.pm
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${P5SITE}/Bio/AlignIO/arp.pm
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${P5SITE}/Bio/AlignIO/bl2seq.pm
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${P5SITE}/Bio/AlignIO/clustalw.pm
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${P5SITE}/Bio/AlignIO/emboss.pm
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${P5SITE}/Bio/AlignIO/fasta.pm
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${P5SITE}/Bio/AlignIO/largemultifasta.pm
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${P5SITE}/Bio/AlignIO/maf.pm
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${P5SITE}/Bio/AlignIO/mase.pm
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${P5SITE}/Bio/AlignIO/mega.pm
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${P5SITE}/Bio/AlignIO/meme.pm
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${P5SITE}/Bio/AlignIO/metafasta.pm
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${P5SITE}/Bio/AlignIO/msf.pm
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${P5SITE}/Bio/AlignIO/nexus.pm
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${P5SITE}/Bio/AlignIO/pfam.pm
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${P5SITE}/Bio/AlignIO/phylip.pm
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${P5SITE}/Bio/AlignIO/po.pm
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${P5SITE}/Bio/AlignIO/proda.pm
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${P5SITE}/Bio/AlignIO/prodom.pm
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${P5SITE}/Bio/AlignIO/psi.pm
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${P5SITE}/Bio/AlignIO/selex.pm
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${P5SITE}/Bio/AlignIO/xmfa.pm
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${P5SITE}/Bio/AnalysisI.pm
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${P5SITE}/Bio/AnalysisParserI.pm
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${P5SITE}/Bio/AnalysisResultI.pm
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${P5SITE}/Bio/AnnotatableI.pm
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${P5SITE}/Bio/Annotation/
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${P5SITE}/Bio/Annotation/AnnotationFactory.pm
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${P5SITE}/Bio/Annotation/Collection.pm
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${P5SITE}/Bio/Annotation/Comment.pm
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${P5SITE}/Bio/Annotation/DBLink.pm
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${P5SITE}/Bio/Annotation/OntologyTerm.pm
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${P5SITE}/Bio/Annotation/Reference.pm
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${P5SITE}/Bio/Annotation/Relation.pm
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${P5SITE}/Bio/Annotation/SimpleValue.pm
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${P5SITE}/Bio/Annotation/StructuredValue.pm
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${P5SITE}/Bio/Annotation/TagTree.pm
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${P5SITE}/Bio/Annotation/Target.pm
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${P5SITE}/Bio/Annotation/Tree.pm
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${P5SITE}/Bio/Annotation/TypeManager.pm
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${P5SITE}/Bio/AnnotationCollectionI.pm
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${P5SITE}/Bio/AnnotationI.pm
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${P5SITE}/Bio/CodonUsage/
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${P5SITE}/Bio/CodonUsage/IO.pm
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${P5SITE}/Bio/CodonUsage/Table.pm
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${P5SITE}/Bio/DB/
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${P5SITE}/Bio/DB/DBFetch.pm
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${P5SITE}/Bio/DB/Failover.pm
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${P5SITE}/Bio/DB/Fasta.pm
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${P5SITE}/Bio/DB/FileCache.pm
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${P5SITE}/Bio/DB/Flat/
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${P5SITE}/Bio/DB/Flat.pm
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${P5SITE}/Bio/DB/Flat/BDB/
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${P5SITE}/Bio/DB/Flat/BDB.pm
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${P5SITE}/Bio/DB/Flat/BDB/embl.pm
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${P5SITE}/Bio/DB/Flat/BDB/fasta.pm
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${P5SITE}/Bio/DB/Flat/BDB/genbank.pm
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${P5SITE}/Bio/DB/Flat/BDB/swiss.pm
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${P5SITE}/Bio/DB/Flat/BinarySearch.pm
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${P5SITE}/Bio/DB/GFF/
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${P5SITE}/Bio/DB/GFF/Util/
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${P5SITE}/Bio/DB/GFF/Util/Binning.pm
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${P5SITE}/Bio/DB/GFF/Util/Rearrange.pm
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${P5SITE}/Bio/DB/GenericWebAgent.pm
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${P5SITE}/Bio/DB/InMemoryCache.pm
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${P5SITE}/Bio/DB/IndexedBase.pm
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${P5SITE}/Bio/DB/LocationI.pm
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${P5SITE}/Bio/DB/Qual.pm
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${P5SITE}/Bio/DB/Query/
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${P5SITE}/Bio/DB/Query/WebQuery.pm
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${P5SITE}/Bio/DB/QueryI.pm
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${P5SITE}/Bio/DB/RandomAccessI.pm
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${P5SITE}/Bio/DB/ReferenceI.pm
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${P5SITE}/Bio/DB/Registry.pm
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${P5SITE}/Bio/DB/SeqI.pm
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${P5SITE}/Bio/DB/Taxonomy/
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${P5SITE}/Bio/DB/Taxonomy.pm
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${P5SITE}/Bio/DB/Taxonomy/flatfile.pm
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${P5SITE}/Bio/DB/Taxonomy/greengenes.pm
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${P5SITE}/Bio/DB/Taxonomy/list.pm
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${P5SITE}/Bio/DB/Taxonomy/silva.pm
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${P5SITE}/Bio/DB/UpdateableSeqI.pm
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${P5SITE}/Bio/DB/WebDBSeqI.pm
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${P5SITE}/Bio/DBLinkContainerI.pm
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${P5SITE}/Bio/Das/
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${P5SITE}/Bio/Das/FeatureTypeI.pm
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${P5SITE}/Bio/Das/SegmentI.pm
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${P5SITE}/Bio/DasI.pm
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${P5SITE}/Bio/DescribableI.pm
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${P5SITE}/Bio/Event/
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${P5SITE}/Bio/Event/EventGeneratorI.pm
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${P5SITE}/Bio/Event/EventHandlerI.pm
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${P5SITE}/Bio/Factory/
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${P5SITE}/Bio/Factory/AnalysisI.pm
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${P5SITE}/Bio/Factory/ApplicationFactoryI.pm
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${P5SITE}/Bio/Factory/DriverFactory.pm
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${P5SITE}/Bio/Factory/FTLocationFactory.pm
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${P5SITE}/Bio/Factory/LocationFactoryI.pm
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${P5SITE}/Bio/Factory/ObjectBuilderI.pm
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${P5SITE}/Bio/Factory/ObjectFactory.pm
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${P5SITE}/Bio/Factory/ObjectFactoryI.pm
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${P5SITE}/Bio/Factory/SeqAnalysisParserFactory.pm
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${P5SITE}/Bio/Factory/SeqAnalysisParserFactoryI.pm
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${P5SITE}/Bio/Factory/SequenceFactoryI.pm
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${P5SITE}/Bio/Factory/SequenceProcessorI.pm
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${P5SITE}/Bio/Factory/SequenceStreamI.pm
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${P5SITE}/Bio/Factory/TreeFactoryI.pm
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${P5SITE}/Bio/FeatureHolderI.pm
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${P5SITE}/Bio/HandlerBaseI.pm
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${P5SITE}/Bio/IdCollectionI.pm
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${P5SITE}/Bio/IdentifiableI.pm
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${P5SITE}/Bio/Index/
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${P5SITE}/Bio/Index/Abstract.pm
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${P5SITE}/Bio/Index/AbstractSeq.pm
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${P5SITE}/Bio/Index/Blast.pm
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${P5SITE}/Bio/Index/BlastTable.pm
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${P5SITE}/Bio/Index/EMBL.pm
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${P5SITE}/Bio/Index/Fasta.pm
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${P5SITE}/Bio/Index/Fastq.pm
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${P5SITE}/Bio/Index/GenBank.pm
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${P5SITE}/Bio/Index/Qual.pm
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${P5SITE}/Bio/Index/SwissPfam.pm
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${P5SITE}/Bio/Index/Swissprot.pm
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${P5SITE}/Bio/LocatableSeq.pm
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${P5SITE}/Bio/Location/
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${P5SITE}/Bio/Location/Atomic.pm
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${P5SITE}/Bio/Location/AvWithinCoordPolicy.pm
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${P5SITE}/Bio/Location/CoordinatePolicyI.pm
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${P5SITE}/Bio/Location/Fuzzy.pm
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${P5SITE}/Bio/Location/FuzzyLocationI.pm
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${P5SITE}/Bio/Location/NarrowestCoordPolicy.pm
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${P5SITE}/Bio/Location/Simple.pm
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${P5SITE}/Bio/Location/Split.pm
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${P5SITE}/Bio/Location/SplitLocationI.pm
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${P5SITE}/Bio/Location/WidestCoordPolicy.pm
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${P5SITE}/Bio/LocationI.pm
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${P5SITE}/Bio/Matrix/
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${P5SITE}/Bio/Matrix/Generic.pm
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${P5SITE}/Bio/Matrix/IO/
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${P5SITE}/Bio/Matrix/IO.pm
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${P5SITE}/Bio/Matrix/IO/mlagan.pm
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${P5SITE}/Bio/Matrix/IO/phylip.pm
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${P5SITE}/Bio/Matrix/IO/scoring.pm
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${P5SITE}/Bio/Matrix/MatrixI.pm
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${P5SITE}/Bio/Matrix/Mlagan.pm
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${P5SITE}/Bio/Matrix/PSM/
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${P5SITE}/Bio/Matrix/PSM/IO/
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${P5SITE}/Bio/Matrix/PSM/IO.pm
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${P5SITE}/Bio/Matrix/PSM/IO/mast.pm
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${P5SITE}/Bio/Matrix/PSM/IO/masta.pm
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${P5SITE}/Bio/Matrix/PSM/IO/meme.pm
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${P5SITE}/Bio/Matrix/PSM/IO/psiblast.pm
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${P5SITE}/Bio/Matrix/PSM/IO/transfac.pm
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${P5SITE}/Bio/Matrix/PSM/InstanceSite.pm
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${P5SITE}/Bio/Matrix/PSM/InstanceSiteI.pm
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${P5SITE}/Bio/Matrix/PSM/ProtMatrix.pm
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${P5SITE}/Bio/Matrix/PSM/ProtPsm.pm
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${P5SITE}/Bio/Matrix/PSM/Psm.pm
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${P5SITE}/Bio/Matrix/PSM/PsmHeader.pm
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${P5SITE}/Bio/Matrix/PSM/PsmHeaderI.pm
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${P5SITE}/Bio/Matrix/PSM/PsmI.pm
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${P5SITE}/Bio/Matrix/PSM/SiteMatrix.pm
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${P5SITE}/Bio/Matrix/PSM/SiteMatrixI.pm
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${P5SITE}/Bio/Matrix/PhylipDist.pm
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${P5SITE}/Bio/Matrix/Scoring.pm
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${P5SITE}/Bio/Ontology/
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${P5SITE}/Bio/Ontology/DocumentRegistry.pm
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${P5SITE}/Bio/Ontology/GOterm.pm
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${P5SITE}/Bio/Ontology/InterProTerm.pm
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${P5SITE}/Bio/Ontology/OBOEngine.pm
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${P5SITE}/Bio/Ontology/OBOterm.pm
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${P5SITE}/Bio/Ontology/Ontology.pm
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${P5SITE}/Bio/Ontology/OntologyEngineI.pm
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${P5SITE}/Bio/Ontology/OntologyI.pm
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${P5SITE}/Bio/Ontology/OntologyStore.pm
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${P5SITE}/Bio/Ontology/Path.pm
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${P5SITE}/Bio/Ontology/PathI.pm
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${P5SITE}/Bio/Ontology/Relationship.pm
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${P5SITE}/Bio/Ontology/RelationshipFactory.pm
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${P5SITE}/Bio/Ontology/RelationshipI.pm
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${P5SITE}/Bio/Ontology/RelationshipType.pm
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${P5SITE}/Bio/Ontology/SimpleGOEngine/
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${P5SITE}/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
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${P5SITE}/Bio/Ontology/SimpleOntologyEngine.pm
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${P5SITE}/Bio/Ontology/Term.pm
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${P5SITE}/Bio/Ontology/TermFactory.pm
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${P5SITE}/Bio/Ontology/TermI.pm
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${P5SITE}/Bio/OntologyIO/
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${P5SITE}/Bio/OntologyIO.pm
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${P5SITE}/Bio/OntologyIO/Handlers/
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${P5SITE}/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
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${P5SITE}/Bio/OntologyIO/Handlers/InterProHandler.pm
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${P5SITE}/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
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${P5SITE}/Bio/OntologyIO/InterProParser.pm
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${P5SITE}/Bio/OntologyIO/dagflat.pm
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${P5SITE}/Bio/OntologyIO/goflat.pm
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${P5SITE}/Bio/OntologyIO/obo.pm
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${P5SITE}/Bio/OntologyIO/simplehierarchy.pm
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${P5SITE}/Bio/OntologyIO/soflat.pm
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${P5SITE}/Bio/ParameterBaseI.pm
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${P5SITE}/Bio/PrimarySeq.pm
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${P5SITE}/Bio/PrimarySeqI.pm
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${P5SITE}/Bio/PullParserI.pm
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${P5SITE}/Bio/Range.pm
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${P5SITE}/Bio/RangeI.pm
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${P5SITE}/Bio/Root/
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${P5SITE}/Bio/Root/Exception.pm
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${P5SITE}/Bio/Root/HTTPget.pm
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${P5SITE}/Bio/Root/IO.pm
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${P5SITE}/Bio/Root/Root.pm
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${P5SITE}/Bio/Root/RootI.pm
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${P5SITE}/Bio/Root/Storable.pm
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${P5SITE}/Bio/Root/Test.pm
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${P5SITE}/Bio/Root/TestObject.pm
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${P5SITE}/Bio/Root/Utilities.pm
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${P5SITE}/Bio/Root/Version.pm
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${P5SITE}/Bio/Search/
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${P5SITE}/Bio/Search/BlastStatistics.pm
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${P5SITE}/Bio/Search/BlastUtils.pm
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${P5SITE}/Bio/Search/DatabaseI.pm
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${P5SITE}/Bio/Search/GenericDatabase.pm
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${P5SITE}/Bio/Search/GenericStatistics.pm
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${P5SITE}/Bio/Search/HSP/
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${P5SITE}/Bio/Search/HSP/BlastHSP.pm
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${P5SITE}/Bio/Search/HSP/BlastPullHSP.pm
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${P5SITE}/Bio/Search/HSP/FastaHSP.pm
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${P5SITE}/Bio/Search/HSP/GenericHSP.pm
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${P5SITE}/Bio/Search/HSP/HSPFactory.pm
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${P5SITE}/Bio/Search/HSP/HSPI.pm
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${P5SITE}/Bio/Search/HSP/ModelHSP.pm
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${P5SITE}/Bio/Search/HSP/PSLHSP.pm
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${P5SITE}/Bio/Search/HSP/PsiBlastHSP.pm
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${P5SITE}/Bio/Search/HSP/PullHSPI.pm
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${P5SITE}/Bio/Search/HSP/WABAHSP.pm
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${P5SITE}/Bio/Search/Hit/
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${P5SITE}/Bio/Search/Hit/BlastHit.pm
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${P5SITE}/Bio/Search/Hit/BlastPullHit.pm
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${P5SITE}/Bio/Search/Hit/Fasta.pm
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${P5SITE}/Bio/Search/Hit/GenericHit.pm
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${P5SITE}/Bio/Search/Hit/HitFactory.pm
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${P5SITE}/Bio/Search/Hit/HitI.pm
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${P5SITE}/Bio/Search/Hit/ModelHit.pm
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${P5SITE}/Bio/Search/Hit/PsiBlastHit.pm
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${P5SITE}/Bio/Search/Hit/PullHitI.pm
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${P5SITE}/Bio/Search/Iteration/
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${P5SITE}/Bio/Search/Iteration/GenericIteration.pm
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${P5SITE}/Bio/Search/Iteration/IterationI.pm
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${P5SITE}/Bio/Search/Processor.pm
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${P5SITE}/Bio/Search/Result/
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${P5SITE}/Bio/Search/Result/BlastPullResult.pm
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${P5SITE}/Bio/Search/Result/BlastResult.pm
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${P5SITE}/Bio/Search/Result/CrossMatchResult.pm
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${P5SITE}/Bio/Search/Result/GenericResult.pm
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${P5SITE}/Bio/Search/Result/INFERNALResult.pm
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${P5SITE}/Bio/Search/Result/PullResultI.pm
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${P5SITE}/Bio/Search/Result/ResultFactory.pm
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${P5SITE}/Bio/Search/Result/ResultI.pm
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${P5SITE}/Bio/Search/Result/WABAResult.pm
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${P5SITE}/Bio/Search/SearchUtils.pm
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${P5SITE}/Bio/Search/StatisticsI.pm
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${P5SITE}/Bio/Search/Tiling/
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${P5SITE}/Bio/Search/Tiling/MapTileUtils.pm
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${P5SITE}/Bio/Search/Tiling/MapTiling.pm
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${P5SITE}/Bio/Search/Tiling/TilingI.pm
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${P5SITE}/Bio/SearchIO/
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${P5SITE}/Bio/SearchIO.pm
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${P5SITE}/Bio/SearchIO/EventHandlerI.pm
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${P5SITE}/Bio/SearchIO/FastHitEventBuilder.pm
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${P5SITE}/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
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${P5SITE}/Bio/SearchIO/SearchResultEventBuilder.pm
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${P5SITE}/Bio/SearchIO/SearchWriterI.pm
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${P5SITE}/Bio/SearchIO/Writer/
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${P5SITE}/Bio/SearchIO/Writer/GbrowseGFF.pm
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${P5SITE}/Bio/SearchIO/Writer/HSPTableWriter.pm
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${P5SITE}/Bio/SearchIO/Writer/HTMLResultWriter.pm
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${P5SITE}/Bio/SearchIO/Writer/HitTableWriter.pm
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${P5SITE}/Bio/SearchIO/Writer/ResultTableWriter.pm
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${P5SITE}/Bio/SearchIO/Writer/TextResultWriter.pm
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${P5SITE}/Bio/SearchIO/axt.pm
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${P5SITE}/Bio/SearchIO/blast.pm
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${P5SITE}/Bio/SearchIO/blast_pull.pm
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${P5SITE}/Bio/SearchIO/blasttable.pm
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${P5SITE}/Bio/SearchIO/cross_match.pm
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${P5SITE}/Bio/SearchIO/erpin.pm
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${P5SITE}/Bio/SearchIO/exonerate.pm
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${P5SITE}/Bio/SearchIO/fasta.pm
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${P5SITE}/Bio/SearchIO/gmap_f9.pm
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${P5SITE}/Bio/SearchIO/infernal.pm
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${P5SITE}/Bio/SearchIO/megablast.pm
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${P5SITE}/Bio/SearchIO/psl.pm
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${P5SITE}/Bio/SearchIO/rnamotif.pm
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${P5SITE}/Bio/SearchIO/sim4.pm
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${P5SITE}/Bio/SearchIO/waba.pm
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${P5SITE}/Bio/SearchIO/wise.pm
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${P5SITE}/Bio/Seq/
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${P5SITE}/Bio/Seq.pm
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${P5SITE}/Bio/Seq/BaseSeqProcessor.pm
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${P5SITE}/Bio/Seq/EncodedSeq.pm
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${P5SITE}/Bio/Seq/LargeLocatableSeq.pm
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${P5SITE}/Bio/Seq/LargePrimarySeq.pm
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${P5SITE}/Bio/Seq/LargeSeq.pm
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${P5SITE}/Bio/Seq/LargeSeqI.pm
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${P5SITE}/Bio/Seq/Meta/
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${P5SITE}/Bio/Seq/Meta.pm
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${P5SITE}/Bio/Seq/Meta/Array.pm
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${P5SITE}/Bio/Seq/MetaI.pm
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${P5SITE}/Bio/Seq/PrimaryQual.pm
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${P5SITE}/Bio/Seq/PrimedSeq.pm
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${P5SITE}/Bio/Seq/QualI.pm
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${P5SITE}/Bio/Seq/Quality.pm
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${P5SITE}/Bio/Seq/RichSeq.pm
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${P5SITE}/Bio/Seq/RichSeqI.pm
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${P5SITE}/Bio/Seq/SeqBuilder.pm
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${P5SITE}/Bio/Seq/SeqFactory.pm
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${P5SITE}/Bio/Seq/SeqFastaSpeedFactory.pm
|
|
${P5SITE}/Bio/Seq/SequenceTrace.pm
|
|
${P5SITE}/Bio/Seq/SimulatedRead.pm
|
|
${P5SITE}/Bio/Seq/TraceI.pm
|
|
${P5SITE}/Bio/SeqAnalysisParserI.pm
|
|
${P5SITE}/Bio/SeqFeature/
|
|
${P5SITE}/Bio/SeqFeature/Amplicon.pm
|
|
${P5SITE}/Bio/SeqFeature/AnnotationAdaptor.pm
|
|
${P5SITE}/Bio/SeqFeature/Collection.pm
|
|
${P5SITE}/Bio/SeqFeature/CollectionI.pm
|
|
${P5SITE}/Bio/SeqFeature/Computation.pm
|
|
${P5SITE}/Bio/SeqFeature/FeaturePair.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/
|
|
${P5SITE}/Bio/SeqFeature/Gene/Exon.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/ExonI.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/GeneStructure.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/GeneStructureI.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/Intron.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/NC_Feature.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/Poly_A_site.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/Promoter.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/Transcript.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/TranscriptI.pm
|
|
${P5SITE}/Bio/SeqFeature/Gene/UTR.pm
|
|
${P5SITE}/Bio/SeqFeature/Generic.pm
|
|
${P5SITE}/Bio/SeqFeature/Lite.pm
|
|
${P5SITE}/Bio/SeqFeature/PositionProxy.pm
|
|
${P5SITE}/Bio/SeqFeature/Primer.pm
|
|
${P5SITE}/Bio/SeqFeature/Similarity.pm
|
|
${P5SITE}/Bio/SeqFeature/SimilarityPair.pm
|
|
${P5SITE}/Bio/SeqFeature/SubSeq.pm
|
|
${P5SITE}/Bio/SeqFeature/Tools/
|
|
${P5SITE}/Bio/SeqFeature/Tools/FeatureNamer.pm
|
|
${P5SITE}/Bio/SeqFeature/Tools/IDHandler.pm
|
|
${P5SITE}/Bio/SeqFeature/Tools/TypeMapper.pm
|
|
${P5SITE}/Bio/SeqFeature/Tools/Unflattener.pm
|
|
${P5SITE}/Bio/SeqFeature/TypedSeqFeatureI.pm
|
|
${P5SITE}/Bio/SeqFeatureI.pm
|
|
${P5SITE}/Bio/SeqI.pm
|
|
${P5SITE}/Bio/SeqIO/
|
|
${P5SITE}/Bio/SeqIO.pm
|
|
${P5SITE}/Bio/SeqIO/FTHelper.pm
|
|
${P5SITE}/Bio/SeqIO/Handler/
|
|
${P5SITE}/Bio/SeqIO/Handler/GenericRichSeqHandler.pm
|
|
${P5SITE}/Bio/SeqIO/MultiFile.pm
|
|
${P5SITE}/Bio/SeqIO/ace.pm
|
|
${P5SITE}/Bio/SeqIO/asciitree.pm
|
|
${P5SITE}/Bio/SeqIO/bsml.pm
|
|
${P5SITE}/Bio/SeqIO/bsml_sax.pm
|
|
${P5SITE}/Bio/SeqIO/embl.pm
|
|
${P5SITE}/Bio/SeqIO/embldriver.pm
|
|
${P5SITE}/Bio/SeqIO/fasta.pm
|
|
${P5SITE}/Bio/SeqIO/fastq.pm
|
|
${P5SITE}/Bio/SeqIO/game/
|
|
${P5SITE}/Bio/SeqIO/game.pm
|
|
${P5SITE}/Bio/SeqIO/game/featHandler.pm
|
|
${P5SITE}/Bio/SeqIO/game/gameHandler.pm
|
|
${P5SITE}/Bio/SeqIO/game/gameSubs.pm
|
|
${P5SITE}/Bio/SeqIO/game/gameWriter.pm
|
|
${P5SITE}/Bio/SeqIO/game/seqHandler.pm
|
|
${P5SITE}/Bio/SeqIO/gbdriver.pm
|
|
${P5SITE}/Bio/SeqIO/gbxml.pm
|
|
${P5SITE}/Bio/SeqIO/gcg.pm
|
|
${P5SITE}/Bio/SeqIO/genbank.pm
|
|
${P5SITE}/Bio/SeqIO/kegg.pm
|
|
${P5SITE}/Bio/SeqIO/largefasta.pm
|
|
${P5SITE}/Bio/SeqIO/locuslink.pm
|
|
${P5SITE}/Bio/SeqIO/mbsout.pm
|
|
${P5SITE}/Bio/SeqIO/metafasta.pm
|
|
${P5SITE}/Bio/SeqIO/msout.pm
|
|
${P5SITE}/Bio/SeqIO/phd.pm
|
|
${P5SITE}/Bio/SeqIO/pir.pm
|
|
${P5SITE}/Bio/SeqIO/qual.pm
|
|
${P5SITE}/Bio/SeqIO/raw.pm
|
|
${P5SITE}/Bio/SeqIO/scf.pm
|
|
${P5SITE}/Bio/SeqIO/seqxml.pm
|
|
${P5SITE}/Bio/SeqIO/swiss.pm
|
|
${P5SITE}/Bio/SeqIO/swissdriver.pm
|
|
${P5SITE}/Bio/SeqIO/tab.pm
|
|
${P5SITE}/Bio/SeqIO/table.pm
|
|
${P5SITE}/Bio/SeqIO/tigr.pm
|
|
${P5SITE}/Bio/SeqIO/tigrxml.pm
|
|
${P5SITE}/Bio/SeqIO/tinyseq/
|
|
${P5SITE}/Bio/SeqIO/tinyseq.pm
|
|
${P5SITE}/Bio/SeqIO/tinyseq/tinyseqHandler.pm
|
|
${P5SITE}/Bio/SeqUtils.pm
|
|
${P5SITE}/Bio/SimpleAlign.pm
|
|
${P5SITE}/Bio/SimpleAnalysisI.pm
|
|
${P5SITE}/Bio/Species.pm
|
|
${P5SITE}/Bio/Taxon.pm
|
|
${P5SITE}/Bio/Tools/
|
|
${P5SITE}/Bio/Tools/Alignment/
|
|
${P5SITE}/Bio/Tools/Alignment/Consed.pm
|
|
${P5SITE}/Bio/Tools/Alignment/Trim.pm
|
|
${P5SITE}/Bio/Tools/AmpliconSearch.pm
|
|
${P5SITE}/Bio/Tools/Analysis/
|
|
${P5SITE}/Bio/Tools/Analysis/SimpleAnalysisBase.pm
|
|
${P5SITE}/Bio/Tools/AnalysisResult.pm
|
|
${P5SITE}/Bio/Tools/Blat.pm
|
|
${P5SITE}/Bio/Tools/CodonTable.pm
|
|
${P5SITE}/Bio/Tools/Coil.pm
|
|
${P5SITE}/Bio/Tools/ECnumber.pm
|
|
${P5SITE}/Bio/Tools/EMBOSS/
|
|
${P5SITE}/Bio/Tools/EMBOSS/Palindrome.pm
|
|
${P5SITE}/Bio/Tools/EPCR.pm
|
|
${P5SITE}/Bio/Tools/ESTScan.pm
|
|
${P5SITE}/Bio/Tools/Eponine.pm
|
|
${P5SITE}/Bio/Tools/Est2Genome.pm
|
|
${P5SITE}/Bio/Tools/Fgenesh.pm
|
|
${P5SITE}/Bio/Tools/FootPrinter.pm
|
|
${P5SITE}/Bio/Tools/GFF.pm
|
|
${P5SITE}/Bio/Tools/Geneid.pm
|
|
${P5SITE}/Bio/Tools/Genemark.pm
|
|
${P5SITE}/Bio/Tools/Genewise.pm
|
|
${P5SITE}/Bio/Tools/Genomewise.pm
|
|
${P5SITE}/Bio/Tools/Genscan.pm
|
|
${P5SITE}/Bio/Tools/Glimmer.pm
|
|
${P5SITE}/Bio/Tools/Grail.pm
|
|
${P5SITE}/Bio/Tools/GuessSeqFormat.pm
|
|
${P5SITE}/Bio/Tools/IUPAC.pm
|
|
${P5SITE}/Bio/Tools/Lucy.pm
|
|
${P5SITE}/Bio/Tools/MZEF.pm
|
|
${P5SITE}/Bio/Tools/Match.pm
|
|
${P5SITE}/Bio/Tools/OddCodes.pm
|
|
${P5SITE}/Bio/Tools/Phylo/
|
|
${P5SITE}/Bio/Tools/Phylo/Gerp.pm
|
|
${P5SITE}/Bio/Tools/Phylo/Molphy/
|
|
${P5SITE}/Bio/Tools/Phylo/Molphy.pm
|
|
${P5SITE}/Bio/Tools/Phylo/Molphy/Result.pm
|
|
${P5SITE}/Bio/Tools/Phylo/Phylip/
|
|
${P5SITE}/Bio/Tools/Phylo/Phylip/ProtDist.pm
|
|
${P5SITE}/Bio/Tools/Prediction/
|
|
${P5SITE}/Bio/Tools/Prediction/Exon.pm
|
|
${P5SITE}/Bio/Tools/Prediction/Gene.pm
|
|
${P5SITE}/Bio/Tools/Primer/
|
|
${P5SITE}/Bio/Tools/Primer/Assessor/
|
|
${P5SITE}/Bio/Tools/Primer/Assessor/Base.pm
|
|
${P5SITE}/Bio/Tools/Primer/AssessorI.pm
|
|
${P5SITE}/Bio/Tools/Primer/Feature.pm
|
|
${P5SITE}/Bio/Tools/Primer/Pair.pm
|
|
${P5SITE}/Bio/Tools/Primer3.pm
|
|
${P5SITE}/Bio/Tools/Prints.pm
|
|
${P5SITE}/Bio/Tools/Profile.pm
|
|
${P5SITE}/Bio/Tools/Promoterwise.pm
|
|
${P5SITE}/Bio/Tools/PrositeScan.pm
|
|
${P5SITE}/Bio/Tools/Pseudowise.pm
|
|
${P5SITE}/Bio/Tools/QRNA.pm
|
|
${P5SITE}/Bio/Tools/RandomDistFunctions.pm
|
|
${P5SITE}/Bio/Tools/RepeatMasker.pm
|
|
${P5SITE}/Bio/Tools/Run/
|
|
${P5SITE}/Bio/Tools/Run/Analysis.pm
|
|
${P5SITE}/Bio/Tools/Run/AnalysisFactory.pm
|
|
${P5SITE}/Bio/Tools/Run/GenericParameters.pm
|
|
${P5SITE}/Bio/Tools/Run/ParametersI.pm
|
|
${P5SITE}/Bio/Tools/Run/Phylo/
|
|
${P5SITE}/Bio/Tools/Run/Phylo/PhyloBase.pm
|
|
${P5SITE}/Bio/Tools/Run/WrapperBase/
|
|
${P5SITE}/Bio/Tools/Run/WrapperBase.pm
|
|
${P5SITE}/Bio/Tools/Run/WrapperBase/CommandExts.pm
|
|
${P5SITE}/Bio/Tools/Seg.pm
|
|
${P5SITE}/Bio/Tools/SeqPattern/
|
|
${P5SITE}/Bio/Tools/SeqPattern.pm
|
|
${P5SITE}/Bio/Tools/SeqPattern/Backtranslate.pm
|
|
${P5SITE}/Bio/Tools/SeqStats.pm
|
|
${P5SITE}/Bio/Tools/SeqWords.pm
|
|
${P5SITE}/Bio/Tools/Sigcleave.pm
|
|
${P5SITE}/Bio/Tools/Signalp/
|
|
${P5SITE}/Bio/Tools/Signalp.pm
|
|
${P5SITE}/Bio/Tools/Signalp/ExtendedSignalp.pm
|
|
${P5SITE}/Bio/Tools/Sim4/
|
|
${P5SITE}/Bio/Tools/Sim4/Exon.pm
|
|
${P5SITE}/Bio/Tools/Sim4/Results.pm
|
|
${P5SITE}/Bio/Tools/Spidey/
|
|
${P5SITE}/Bio/Tools/Spidey/Exon.pm
|
|
${P5SITE}/Bio/Tools/Spidey/Results.pm
|
|
${P5SITE}/Bio/Tools/TandemRepeatsFinder.pm
|
|
${P5SITE}/Bio/Tools/TargetP.pm
|
|
${P5SITE}/Bio/Tools/Tmhmm.pm
|
|
${P5SITE}/Bio/Tools/ipcress.pm
|
|
${P5SITE}/Bio/Tools/isPcr.pm
|
|
${P5SITE}/Bio/Tools/pICalculator.pm
|
|
${P5SITE}/Bio/Tools/tRNAscanSE.pm
|
|
${P5SITE}/Bio/Tree/
|
|
${P5SITE}/Bio/Tree/AnnotatableNode.pm
|
|
${P5SITE}/Bio/Tree/Compatible.pm
|
|
${P5SITE}/Bio/Tree/DistanceFactory.pm
|
|
${P5SITE}/Bio/Tree/Node.pm
|
|
${P5SITE}/Bio/Tree/NodeI.pm
|
|
${P5SITE}/Bio/Tree/NodeNHX.pm
|
|
${P5SITE}/Bio/Tree/RandomFactory.pm
|
|
${P5SITE}/Bio/Tree/Statistics.pm
|
|
${P5SITE}/Bio/Tree/Tree.pm
|
|
${P5SITE}/Bio/Tree/TreeFunctionsI.pm
|
|
${P5SITE}/Bio/Tree/TreeI.pm
|
|
${P5SITE}/Bio/TreeIO/
|
|
${P5SITE}/Bio/TreeIO.pm
|
|
${P5SITE}/Bio/TreeIO/NewickParser.pm
|
|
${P5SITE}/Bio/TreeIO/TreeEventBuilder.pm
|
|
${P5SITE}/Bio/TreeIO/cluster.pm
|
|
${P5SITE}/Bio/TreeIO/lintree.pm
|
|
${P5SITE}/Bio/TreeIO/newick.pm
|
|
${P5SITE}/Bio/TreeIO/nexus.pm
|
|
${P5SITE}/Bio/TreeIO/nhx.pm
|
|
${P5SITE}/Bio/TreeIO/pag.pm
|
|
${P5SITE}/Bio/TreeIO/phyloxml.pm
|
|
${P5SITE}/Bio/TreeIO/tabtree.pm
|
|
${P5SITE}/Bio/UpdateableSeqI.pm
|
|
${P5SITE}/Bio/WebAgent.pm
|
|
${P5SITE}/BioPerl.pm
|
|
@man man/man1/bp_aacomp.1
|
|
@man man/man1/bp_bioflat_index.1
|
|
@man man/man1/bp_biogetseq.1
|
|
@man man/man1/bp_dbsplit.1
|
|
@man man/man1/bp_extract_feature_seq.1
|
|
@man man/man1/bp_fastam9_to_table.1
|
|
@man man/man1/bp_fetch.1
|
|
@man man/man1/bp_filter_search.1
|
|
@man man/man1/bp_find-blast-matches.1
|
|
@man man/man1/bp_gccalc.1
|
|
@man man/man1/bp_genbank2gff3.1
|
|
@man man/man1/bp_index.1
|
|
@man man/man1/bp_local_taxonomydb_query.1
|
|
@man man/man1/bp_make_mrna_protein.1
|
|
@man man/man1/bp_mask_by_search.1
|
|
@man man/man1/bp_mrtrans.1
|
|
@man man/man1/bp_mutate.1
|
|
@man man/man1/bp_nexus2nh.1
|
|
@man man/man1/bp_nrdb.1
|
|
@man man/man1/bp_oligo_count.1
|
|
@man man/man1/bp_process_gadfly.1
|
|
@man man/man1/bp_process_sgd.1
|
|
@man man/man1/bp_revtrans-motif.1
|
|
@man man/man1/bp_search2alnblocks.1
|
|
@man man/man1/bp_search2gff.1
|
|
@man man/man1/bp_search2table.1
|
|
@man man/man1/bp_search2tribe.1
|
|
@man man/man1/bp_seq_length.1
|
|
@man man/man1/bp_seqconvert.1
|
|
@man man/man1/bp_seqcut.1
|
|
@man man/man1/bp_seqpart.1
|
|
@man man/man1/bp_seqret.1
|
|
@man man/man1/bp_seqretsplit.1
|
|
@man man/man1/bp_split_seq.1
|
|
@man man/man1/bp_sreformat.1
|
|
@man man/man1/bp_taxid4species.1
|
|
@man man/man1/bp_taxonomy2tree.1
|
|
@man man/man1/bp_translate_seq.1
|
|
@man man/man1/bp_tree2pag.1
|
|
@man man/man1/bp_unflatten_seq.1
|
|
@man man/man3p/Bio::Align::AlignI.3p
|
|
@man man/man3p/Bio::Align::DNAStatistics.3p
|
|
@man man/man3p/Bio::Align::PairwiseStatistics.3p
|
|
@man man/man3p/Bio::Align::ProteinStatistics.3p
|
|
@man man/man3p/Bio::Align::StatisticsI.3p
|
|
@man man/man3p/Bio::Align::Utilities.3p
|
|
@man man/man3p/Bio::AlignIO.3p
|
|
@man man/man3p/Bio::AlignIO::Handler::GenericAlignHandler.3p
|
|
@man man/man3p/Bio::AlignIO::arp.3p
|
|
@man man/man3p/Bio::AlignIO::bl2seq.3p
|
|
@man man/man3p/Bio::AlignIO::clustalw.3p
|
|
@man man/man3p/Bio::AlignIO::emboss.3p
|
|
@man man/man3p/Bio::AlignIO::fasta.3p
|
|
@man man/man3p/Bio::AlignIO::largemultifasta.3p
|
|
@man man/man3p/Bio::AlignIO::maf.3p
|
|
@man man/man3p/Bio::AlignIO::mase.3p
|
|
@man man/man3p/Bio::AlignIO::mega.3p
|
|
@man man/man3p/Bio::AlignIO::meme.3p
|
|
@man man/man3p/Bio::AlignIO::metafasta.3p
|
|
@man man/man3p/Bio::AlignIO::msf.3p
|
|
@man man/man3p/Bio::AlignIO::nexus.3p
|
|
@man man/man3p/Bio::AlignIO::pfam.3p
|
|
@man man/man3p/Bio::AlignIO::phylip.3p
|
|
@man man/man3p/Bio::AlignIO::po.3p
|
|
@man man/man3p/Bio::AlignIO::proda.3p
|
|
@man man/man3p/Bio::AlignIO::prodom.3p
|
|
@man man/man3p/Bio::AlignIO::psi.3p
|
|
@man man/man3p/Bio::AlignIO::selex.3p
|
|
@man man/man3p/Bio::AlignIO::xmfa.3p
|
|
@man man/man3p/Bio::AnalysisI.3p
|
|
@man man/man3p/Bio::AnalysisParserI.3p
|
|
@man man/man3p/Bio::AnalysisResultI.3p
|
|
@man man/man3p/Bio::AnnotatableI.3p
|
|
@man man/man3p/Bio::Annotation::AnnotationFactory.3p
|
|
@man man/man3p/Bio::Annotation::Collection.3p
|
|
@man man/man3p/Bio::Annotation::Comment.3p
|
|
@man man/man3p/Bio::Annotation::DBLink.3p
|
|
@man man/man3p/Bio::Annotation::OntologyTerm.3p
|
|
@man man/man3p/Bio::Annotation::Reference.3p
|
|
@man man/man3p/Bio::Annotation::Relation.3p
|
|
@man man/man3p/Bio::Annotation::SimpleValue.3p
|
|
@man man/man3p/Bio::Annotation::StructuredValue.3p
|
|
@man man/man3p/Bio::Annotation::TagTree.3p
|
|
@man man/man3p/Bio::Annotation::Target.3p
|
|
@man man/man3p/Bio::Annotation::Tree.3p
|
|
@man man/man3p/Bio::Annotation::TypeManager.3p
|
|
@man man/man3p/Bio::AnnotationCollectionI.3p
|
|
@man man/man3p/Bio::AnnotationI.3p
|
|
@man man/man3p/Bio::CodonUsage::IO.3p
|
|
@man man/man3p/Bio::CodonUsage::Table.3p
|
|
@man man/man3p/Bio::DB::DBFetch.3p
|
|
@man man/man3p/Bio::DB::Failover.3p
|
|
@man man/man3p/Bio::DB::Fasta.3p
|
|
@man man/man3p/Bio::DB::FileCache.3p
|
|
@man man/man3p/Bio::DB::Flat.3p
|
|
@man man/man3p/Bio::DB::Flat::BDB.3p
|
|
@man man/man3p/Bio::DB::Flat::BDB::embl.3p
|
|
@man man/man3p/Bio::DB::Flat::BDB::fasta.3p
|
|
@man man/man3p/Bio::DB::Flat::BDB::genbank.3p
|
|
@man man/man3p/Bio::DB::Flat::BDB::swiss.3p
|
|
@man man/man3p/Bio::DB::Flat::BinarySearch.3p
|
|
@man man/man3p/Bio::DB::GFF::Util::Binning.3p
|
|
@man man/man3p/Bio::DB::GFF::Util::Rearrange.3p
|
|
@man man/man3p/Bio::DB::GenericWebAgent.3p
|
|
@man man/man3p/Bio::DB::InMemoryCache.3p
|
|
@man man/man3p/Bio::DB::IndexedBase.3p
|
|
@man man/man3p/Bio::DB::LocationI.3p
|
|
@man man/man3p/Bio::DB::Qual.3p
|
|
@man man/man3p/Bio::DB::Query::WebQuery.3p
|
|
@man man/man3p/Bio::DB::QueryI.3p
|
|
@man man/man3p/Bio::DB::RandomAccessI.3p
|
|
@man man/man3p/Bio::DB::ReferenceI.3p
|
|
@man man/man3p/Bio::DB::Registry.3p
|
|
@man man/man3p/Bio::DB::SeqI.3p
|
|
@man man/man3p/Bio::DB::Taxonomy.3p
|
|
@man man/man3p/Bio::DB::Taxonomy::flatfile.3p
|
|
@man man/man3p/Bio::DB::Taxonomy::greengenes.3p
|
|
@man man/man3p/Bio::DB::Taxonomy::list.3p
|
|
@man man/man3p/Bio::DB::Taxonomy::silva.3p
|
|
@man man/man3p/Bio::DB::UpdateableSeqI.3p
|
|
@man man/man3p/Bio::DB::WebDBSeqI.3p
|
|
@man man/man3p/Bio::DBLinkContainerI.3p
|
|
@man man/man3p/Bio::Das::FeatureTypeI.3p
|
|
@man man/man3p/Bio::Das::SegmentI.3p
|
|
@man man/man3p/Bio::DasI.3p
|
|
@man man/man3p/Bio::DescribableI.3p
|
|
@man man/man3p/Bio::Event::EventGeneratorI.3p
|
|
@man man/man3p/Bio::Event::EventHandlerI.3p
|
|
@man man/man3p/Bio::Factory::AnalysisI.3p
|
|
@man man/man3p/Bio::Factory::ApplicationFactoryI.3p
|
|
@man man/man3p/Bio::Factory::DriverFactory.3p
|
|
@man man/man3p/Bio::Factory::FTLocationFactory.3p
|
|
@man man/man3p/Bio::Factory::LocationFactoryI.3p
|
|
@man man/man3p/Bio::Factory::ObjectBuilderI.3p
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@man man/man3p/Bio::Factory::ObjectFactory.3p
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@man man/man3p/Bio::Factory::ObjectFactoryI.3p
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@man man/man3p/Bio::Factory::SeqAnalysisParserFactory.3p
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@man man/man3p/Bio::Factory::SeqAnalysisParserFactoryI.3p
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@man man/man3p/Bio::Factory::SequenceFactoryI.3p
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@man man/man3p/Bio::Factory::SequenceProcessorI.3p
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@man man/man3p/Bio::Factory::SequenceStreamI.3p
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@man man/man3p/Bio::Factory::TreeFactoryI.3p
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@man man/man3p/Bio::FeatureHolderI.3p
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@man man/man3p/Bio::HandlerBaseI.3p
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@man man/man3p/Bio::IdCollectionI.3p
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@man man/man3p/Bio::IdentifiableI.3p
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@man man/man3p/Bio::Index::Abstract.3p
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@man man/man3p/Bio::Index::AbstractSeq.3p
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@man man/man3p/Bio::Index::Blast.3p
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@man man/man3p/Bio::Index::BlastTable.3p
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@man man/man3p/Bio::Index::EMBL.3p
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@man man/man3p/Bio::Index::Fasta.3p
|
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@man man/man3p/Bio::Index::Fastq.3p
|
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@man man/man3p/Bio::Index::GenBank.3p
|
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@man man/man3p/Bio::Index::Qual.3p
|
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@man man/man3p/Bio::Index::SwissPfam.3p
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@man man/man3p/Bio::Index::Swissprot.3p
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@man man/man3p/Bio::LocatableSeq.3p
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@man man/man3p/Bio::Location::Atomic.3p
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@man man/man3p/Bio::Location::AvWithinCoordPolicy.3p
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@man man/man3p/Bio::Location::CoordinatePolicyI.3p
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@man man/man3p/Bio::Location::Fuzzy.3p
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@man man/man3p/Bio::Location::FuzzyLocationI.3p
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@man man/man3p/Bio::Location::NarrowestCoordPolicy.3p
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@man man/man3p/Bio::Location::Simple.3p
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@man man/man3p/Bio::Location::Split.3p
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@man man/man3p/Bio::Location::SplitLocationI.3p
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@man man/man3p/Bio::Location::WidestCoordPolicy.3p
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@man man/man3p/Bio::LocationI.3p
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@man man/man3p/Bio::Matrix::Generic.3p
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@man man/man3p/Bio::Matrix::IO.3p
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@man man/man3p/Bio::Matrix::IO::mlagan.3p
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@man man/man3p/Bio::Matrix::IO::phylip.3p
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@man man/man3p/Bio::Matrix::IO::scoring.3p
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@man man/man3p/Bio::Matrix::MatrixI.3p
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@man man/man3p/Bio::Matrix::Mlagan.3p
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@man man/man3p/Bio::Matrix::PSM::IO.3p
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@man man/man3p/Bio::Matrix::PSM::IO::mast.3p
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@man man/man3p/Bio::Matrix::PSM::IO::masta.3p
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@man man/man3p/Bio::Matrix::PSM::IO::meme.3p
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@man man/man3p/Bio::Matrix::PSM::IO::psiblast.3p
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@man man/man3p/Bio::Matrix::PSM::IO::transfac.3p
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@man man/man3p/Bio::Matrix::PSM::InstanceSite.3p
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@man man/man3p/Bio::Matrix::PSM::InstanceSiteI.3p
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@man man/man3p/Bio::Matrix::PSM::ProtMatrix.3p
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@man man/man3p/Bio::Matrix::PSM::ProtPsm.3p
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@man man/man3p/Bio::Matrix::PSM::Psm.3p
|
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@man man/man3p/Bio::Matrix::PSM::PsmHeader.3p
|
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@man man/man3p/Bio::Matrix::PSM::PsmHeaderI.3p
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@man man/man3p/Bio::Matrix::PSM::PsmI.3p
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@man man/man3p/Bio::Matrix::PSM::SiteMatrix.3p
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@man man/man3p/Bio::Matrix::PSM::SiteMatrixI.3p
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@man man/man3p/Bio::Matrix::PhylipDist.3p
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@man man/man3p/Bio::Matrix::Scoring.3p
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@man man/man3p/Bio::Ontology::DocumentRegistry.3p
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@man man/man3p/Bio::Ontology::GOterm.3p
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@man man/man3p/Bio::Ontology::InterProTerm.3p
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@man man/man3p/Bio::Ontology::OBOEngine.3p
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@man man/man3p/Bio::Ontology::OBOterm.3p
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@man man/man3p/Bio::Ontology::Ontology.3p
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@man man/man3p/Bio::Ontology::OntologyEngineI.3p
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@man man/man3p/Bio::Ontology::OntologyI.3p
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@man man/man3p/Bio::Ontology::OntologyStore.3p
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@man man/man3p/Bio::Ontology::Path.3p
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@man man/man3p/Bio::Ontology::PathI.3p
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@man man/man3p/Bio::Ontology::Relationship.3p
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@man man/man3p/Bio::Ontology::RelationshipFactory.3p
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@man man/man3p/Bio::Ontology::RelationshipI.3p
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@man man/man3p/Bio::Ontology::RelationshipType.3p
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@man man/man3p/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3p
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@man man/man3p/Bio::Ontology::SimpleOntologyEngine.3p
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@man man/man3p/Bio::Ontology::Term.3p
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@man man/man3p/Bio::Ontology::TermFactory.3p
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@man man/man3p/Bio::Ontology::TermI.3p
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@man man/man3p/Bio::OntologyIO.3p
|
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@man man/man3p/Bio::OntologyIO::Handlers::BaseSAXHandler.3p
|
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@man man/man3p/Bio::OntologyIO::Handlers::InterProHandler.3p
|
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@man man/man3p/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3p
|
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@man man/man3p/Bio::OntologyIO::InterProParser.3p
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@man man/man3p/Bio::OntologyIO::dagflat.3p
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@man man/man3p/Bio::OntologyIO::goflat.3p
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@man man/man3p/Bio::OntologyIO::obo.3p
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@man man/man3p/Bio::OntologyIO::simplehierarchy.3p
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@man man/man3p/Bio::OntologyIO::soflat.3p
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@man man/man3p/Bio::ParameterBaseI.3p
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@man man/man3p/Bio::PrimarySeq.3p
|
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@man man/man3p/Bio::PrimarySeqI.3p
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@man man/man3p/Bio::PullParserI.3p
|
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@man man/man3p/Bio::Range.3p
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@man man/man3p/Bio::RangeI.3p
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@man man/man3p/Bio::Root::Exception.3p
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@man man/man3p/Bio::Root::HTTPget.3p
|
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@man man/man3p/Bio::Root::IO.3p
|
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@man man/man3p/Bio::Root::Root.3p
|
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@man man/man3p/Bio::Root::RootI.3p
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@man man/man3p/Bio::Root::Storable.3p
|
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@man man/man3p/Bio::Root::Test.3p
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@man man/man3p/Bio::Root::TestObject.3p
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@man man/man3p/Bio::Root::Utilities.3p
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@man man/man3p/Bio::Root::Version.3p
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@man man/man3p/Bio::Search::BlastStatistics.3p
|
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@man man/man3p/Bio::Search::BlastUtils.3p
|
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@man man/man3p/Bio::Search::DatabaseI.3p
|
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@man man/man3p/Bio::Search::GenericDatabase.3p
|
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@man man/man3p/Bio::Search::GenericStatistics.3p
|
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@man man/man3p/Bio::Search::HSP::BlastHSP.3p
|
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@man man/man3p/Bio::Search::HSP::BlastPullHSP.3p
|
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@man man/man3p/Bio::Search::HSP::FastaHSP.3p
|
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@man man/man3p/Bio::Search::HSP::GenericHSP.3p
|
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@man man/man3p/Bio::Search::HSP::HSPFactory.3p
|
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@man man/man3p/Bio::Search::HSP::HSPI.3p
|
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@man man/man3p/Bio::Search::HSP::ModelHSP.3p
|
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@man man/man3p/Bio::Search::HSP::PSLHSP.3p
|
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@man man/man3p/Bio::Search::HSP::PsiBlastHSP.3p
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@man man/man3p/Bio::Search::HSP::PullHSPI.3p
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@man man/man3p/Bio::Search::HSP::WABAHSP.3p
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@man man/man3p/Bio::Search::Hit::BlastHit.3p
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@man man/man3p/Bio::Search::Hit::BlastPullHit.3p
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@man man/man3p/Bio::Search::Hit::Fasta.3p
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@man man/man3p/Bio::Search::Hit::GenericHit.3p
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@man man/man3p/Bio::Search::Hit::HitFactory.3p
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@man man/man3p/Bio::Search::Hit::HitI.3p
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@man man/man3p/Bio::Search::Hit::ModelHit.3p
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@man man/man3p/Bio::Search::Hit::PsiBlastHit.3p
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@man man/man3p/Bio::Search::Hit::PullHitI.3p
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@man man/man3p/Bio::Search::Iteration::GenericIteration.3p
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@man man/man3p/Bio::Search::Iteration::IterationI.3p
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@man man/man3p/Bio::Search::Processor.3p
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@man man/man3p/Bio::Search::Result::BlastPullResult.3p
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@man man/man3p/Bio::Search::Result::BlastResult.3p
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@man man/man3p/Bio::Search::Result::CrossMatchResult.3p
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@man man/man3p/Bio::Search::Result::GenericResult.3p
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@man man/man3p/Bio::Search::Result::INFERNALResult.3p
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@man man/man3p/Bio::Search::Result::PullResultI.3p
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@man man/man3p/Bio::Search::Result::ResultFactory.3p
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@man man/man3p/Bio::Search::Result::ResultI.3p
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@man man/man3p/Bio::Search::Result::WABAResult.3p
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@man man/man3p/Bio::Search::SearchUtils.3p
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@man man/man3p/Bio::Search::StatisticsI.3p
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@man man/man3p/Bio::Search::Tiling::MapTileUtils.3p
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@man man/man3p/Bio::Search::Tiling::MapTiling.3p
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@man man/man3p/Bio::Search::Tiling::TilingI.3p
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@man man/man3p/Bio::SearchIO.3p
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@man man/man3p/Bio::SearchIO::EventHandlerI.3p
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@man man/man3p/Bio::SearchIO::FastHitEventBuilder.3p
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@man man/man3p/Bio::SearchIO::IteratedSearchResultEventBuilder.3p
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@man man/man3p/Bio::SearchIO::SearchResultEventBuilder.3p
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@man man/man3p/Bio::SearchIO::SearchWriterI.3p
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@man man/man3p/Bio::SearchIO::Writer::GbrowseGFF.3p
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@man man/man3p/Bio::SearchIO::Writer::HSPTableWriter.3p
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@man man/man3p/Bio::SearchIO::Writer::HTMLResultWriter.3p
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@man man/man3p/Bio::SearchIO::Writer::HitTableWriter.3p
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@man man/man3p/Bio::SearchIO::Writer::ResultTableWriter.3p
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@man man/man3p/Bio::SearchIO::Writer::TextResultWriter.3p
|
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@man man/man3p/Bio::SearchIO::axt.3p
|
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@man man/man3p/Bio::SearchIO::blast.3p
|
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@man man/man3p/Bio::SearchIO::blast_pull.3p
|
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@man man/man3p/Bio::SearchIO::blasttable.3p
|
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@man man/man3p/Bio::SearchIO::cross_match.3p
|
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@man man/man3p/Bio::SearchIO::erpin.3p
|
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@man man/man3p/Bio::SearchIO::exonerate.3p
|
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@man man/man3p/Bio::SearchIO::fasta.3p
|
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@man man/man3p/Bio::SearchIO::gmap_f9.3p
|
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@man man/man3p/Bio::SearchIO::infernal.3p
|
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@man man/man3p/Bio::SearchIO::megablast.3p
|
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@man man/man3p/Bio::SearchIO::psl.3p
|
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@man man/man3p/Bio::SearchIO::rnamotif.3p
|
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@man man/man3p/Bio::SearchIO::sim4.3p
|
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@man man/man3p/Bio::SearchIO::waba.3p
|
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@man man/man3p/Bio::SearchIO::wise.3p
|
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@man man/man3p/Bio::Seq.3p
|
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@man man/man3p/Bio::Seq::BaseSeqProcessor.3p
|
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@man man/man3p/Bio::Seq::EncodedSeq.3p
|
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@man man/man3p/Bio::Seq::LargeLocatableSeq.3p
|
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@man man/man3p/Bio::Seq::LargePrimarySeq.3p
|
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@man man/man3p/Bio::Seq::LargeSeq.3p
|
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@man man/man3p/Bio::Seq::LargeSeqI.3p
|
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@man man/man3p/Bio::Seq::Meta.3p
|
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@man man/man3p/Bio::Seq::Meta::Array.3p
|
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@man man/man3p/Bio::Seq::MetaI.3p
|
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@man man/man3p/Bio::Seq::PrimaryQual.3p
|
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@man man/man3p/Bio::Seq::PrimedSeq.3p
|
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@man man/man3p/Bio::Seq::QualI.3p
|
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@man man/man3p/Bio::Seq::Quality.3p
|
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@man man/man3p/Bio::Seq::RichSeq.3p
|
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@man man/man3p/Bio::Seq::RichSeqI.3p
|
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@man man/man3p/Bio::Seq::SeqBuilder.3p
|
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@man man/man3p/Bio::Seq::SeqFactory.3p
|
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@man man/man3p/Bio::Seq::SeqFastaSpeedFactory.3p
|
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@man man/man3p/Bio::Seq::SequenceTrace.3p
|
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@man man/man3p/Bio::Seq::SimulatedRead.3p
|
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@man man/man3p/Bio::Seq::TraceI.3p
|
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@man man/man3p/Bio::SeqAnalysisParserI.3p
|
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@man man/man3p/Bio::SeqFeature::Amplicon.3p
|
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@man man/man3p/Bio::SeqFeature::AnnotationAdaptor.3p
|
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@man man/man3p/Bio::SeqFeature::Collection.3p
|
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@man man/man3p/Bio::SeqFeature::CollectionI.3p
|
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@man man/man3p/Bio::SeqFeature::Computation.3p
|
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@man man/man3p/Bio::SeqFeature::FeaturePair.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::Exon.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::ExonI.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::GeneStructure.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::GeneStructureI.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::Intron.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::NC_Feature.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::Poly_A_site.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::Promoter.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::Transcript.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::TranscriptI.3p
|
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@man man/man3p/Bio::SeqFeature::Gene::UTR.3p
|
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@man man/man3p/Bio::SeqFeature::Generic.3p
|
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@man man/man3p/Bio::SeqFeature::Lite.3p
|
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@man man/man3p/Bio::SeqFeature::PositionProxy.3p
|
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@man man/man3p/Bio::SeqFeature::Primer.3p
|
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@man man/man3p/Bio::SeqFeature::Similarity.3p
|
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@man man/man3p/Bio::SeqFeature::SimilarityPair.3p
|
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@man man/man3p/Bio::SeqFeature::SubSeq.3p
|
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@man man/man3p/Bio::SeqFeature::Tools::FeatureNamer.3p
|
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@man man/man3p/Bio::SeqFeature::Tools::IDHandler.3p
|
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@man man/man3p/Bio::SeqFeature::Tools::TypeMapper.3p
|
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@man man/man3p/Bio::SeqFeature::Tools::Unflattener.3p
|
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@man man/man3p/Bio::SeqFeature::TypedSeqFeatureI.3p
|
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@man man/man3p/Bio::SeqFeatureI.3p
|
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@man man/man3p/Bio::SeqI.3p
|
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@man man/man3p/Bio::SeqIO.3p
|
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@man man/man3p/Bio::SeqIO::FTHelper.3p
|
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@man man/man3p/Bio::SeqIO::Handler::GenericRichSeqHandler.3p
|
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@man man/man3p/Bio::SeqIO::MultiFile.3p
|
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@man man/man3p/Bio::SeqIO::ace.3p
|
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@man man/man3p/Bio::SeqIO::asciitree.3p
|
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@man man/man3p/Bio::SeqIO::bsml.3p
|
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@man man/man3p/Bio::SeqIO::bsml_sax.3p
|
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@man man/man3p/Bio::SeqIO::embl.3p
|
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@man man/man3p/Bio::SeqIO::embldriver.3p
|
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@man man/man3p/Bio::SeqIO::fasta.3p
|
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@man man/man3p/Bio::SeqIO::fastq.3p
|
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@man man/man3p/Bio::SeqIO::game.3p
|
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@man man/man3p/Bio::SeqIO::game::featHandler.3p
|
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@man man/man3p/Bio::SeqIO::game::gameHandler.3p
|
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@man man/man3p/Bio::SeqIO::game::gameSubs.3p
|
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@man man/man3p/Bio::SeqIO::game::gameWriter.3p
|
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@man man/man3p/Bio::SeqIO::game::seqHandler.3p
|
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@man man/man3p/Bio::SeqIO::gbdriver.3p
|
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@man man/man3p/Bio::SeqIO::gbxml.3p
|
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@man man/man3p/Bio::SeqIO::gcg.3p
|
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@man man/man3p/Bio::SeqIO::genbank.3p
|
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@man man/man3p/Bio::SeqIO::kegg.3p
|
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@man man/man3p/Bio::SeqIO::largefasta.3p
|
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@man man/man3p/Bio::SeqIO::locuslink.3p
|
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@man man/man3p/Bio::SeqIO::mbsout.3p
|
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@man man/man3p/Bio::SeqIO::metafasta.3p
|
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@man man/man3p/Bio::SeqIO::msout.3p
|
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@man man/man3p/Bio::SeqIO::phd.3p
|
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@man man/man3p/Bio::SeqIO::pir.3p
|
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@man man/man3p/Bio::SeqIO::qual.3p
|
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@man man/man3p/Bio::SeqIO::raw.3p
|
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@man man/man3p/Bio::SeqIO::scf.3p
|
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@man man/man3p/Bio::SeqIO::seqxml.3p
|
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@man man/man3p/Bio::SeqIO::swiss.3p
|
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@man man/man3p/Bio::SeqIO::swissdriver.3p
|
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@man man/man3p/Bio::SeqIO::tab.3p
|
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@man man/man3p/Bio::SeqIO::table.3p
|
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@man man/man3p/Bio::SeqIO::tigr.3p
|
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@man man/man3p/Bio::SeqIO::tigrxml.3p
|
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@man man/man3p/Bio::SeqIO::tinyseq.3p
|
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@man man/man3p/Bio::SeqIO::tinyseq::tinyseqHandler.3p
|
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@man man/man3p/Bio::SeqUtils.3p
|
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@man man/man3p/Bio::SimpleAlign.3p
|
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@man man/man3p/Bio::SimpleAnalysisI.3p
|
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@man man/man3p/Bio::Species.3p
|
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@man man/man3p/Bio::Taxon.3p
|
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@man man/man3p/Bio::Tools::Alignment::Consed.3p
|
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@man man/man3p/Bio::Tools::Alignment::Trim.3p
|
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@man man/man3p/Bio::Tools::AmpliconSearch.3p
|
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@man man/man3p/Bio::Tools::Analysis::SimpleAnalysisBase.3p
|
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@man man/man3p/Bio::Tools::AnalysisResult.3p
|
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@man man/man3p/Bio::Tools::Blat.3p
|
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@man man/man3p/Bio::Tools::CodonTable.3p
|
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@man man/man3p/Bio::Tools::Coil.3p
|
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@man man/man3p/Bio::Tools::ECnumber.3p
|
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@man man/man3p/Bio::Tools::EMBOSS::Palindrome.3p
|
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@man man/man3p/Bio::Tools::EPCR.3p
|
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@man man/man3p/Bio::Tools::ESTScan.3p
|
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@man man/man3p/Bio::Tools::Eponine.3p
|
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@man man/man3p/Bio::Tools::Est2Genome.3p
|
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@man man/man3p/Bio::Tools::Fgenesh.3p
|
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@man man/man3p/Bio::Tools::FootPrinter.3p
|
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@man man/man3p/Bio::Tools::GFF.3p
|
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@man man/man3p/Bio::Tools::Geneid.3p
|
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@man man/man3p/Bio::Tools::Genemark.3p
|
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@man man/man3p/Bio::Tools::Genewise.3p
|
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@man man/man3p/Bio::Tools::Genomewise.3p
|
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@man man/man3p/Bio::Tools::Genscan.3p
|
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@man man/man3p/Bio::Tools::Glimmer.3p
|
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@man man/man3p/Bio::Tools::Grail.3p
|
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@man man/man3p/Bio::Tools::GuessSeqFormat.3p
|
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@man man/man3p/Bio::Tools::IUPAC.3p
|
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@man man/man3p/Bio::Tools::Lucy.3p
|
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@man man/man3p/Bio::Tools::MZEF.3p
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@man man/man3p/Bio::Tools::Match.3p
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@man man/man3p/Bio::Tools::OddCodes.3p
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@man man/man3p/Bio::Tools::Phylo::Gerp.3p
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@man man/man3p/Bio::Tools::Phylo::Molphy.3p
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@man man/man3p/Bio::Tools::Phylo::Molphy::Result.3p
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@man man/man3p/Bio::Tools::Phylo::Phylip::ProtDist.3p
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@man man/man3p/Bio::Tools::Prediction::Exon.3p
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@man man/man3p/Bio::Tools::Prediction::Gene.3p
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@man man/man3p/Bio::Tools::Primer3.3p
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@man man/man3p/Bio::Tools::Primer::Assessor::Base.3p
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@man man/man3p/Bio::Tools::Primer::AssessorI.3p
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@man man/man3p/Bio::Tools::Primer::Feature.3p
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@man man/man3p/Bio::Tools::Primer::Pair.3p
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@man man/man3p/Bio::Tools::Prints.3p
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@man man/man3p/Bio::Tools::Profile.3p
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@man man/man3p/Bio::Tools::Promoterwise.3p
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@man man/man3p/Bio::Tools::PrositeScan.3p
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@man man/man3p/Bio::Tools::Pseudowise.3p
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@man man/man3p/Bio::Tools::QRNA.3p
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@man man/man3p/Bio::Tools::RandomDistFunctions.3p
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@man man/man3p/Bio::Tools::RepeatMasker.3p
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@man man/man3p/Bio::Tools::Run::Analysis.3p
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@man man/man3p/Bio::Tools::Run::AnalysisFactory.3p
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@man man/man3p/Bio::Tools::Run::GenericParameters.3p
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@man man/man3p/Bio::Tools::Run::ParametersI.3p
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@man man/man3p/Bio::Tools::Run::Phylo::PhyloBase.3p
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@man man/man3p/Bio::Tools::Run::WrapperBase.3p
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@man man/man3p/Bio::Tools::Run::WrapperBase::CommandExts.3p
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@man man/man3p/Bio::Tools::Seg.3p
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@man man/man3p/Bio::Tools::SeqPattern.3p
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@man man/man3p/Bio::Tools::SeqPattern::Backtranslate.3p
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@man man/man3p/Bio::Tools::SeqStats.3p
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@man man/man3p/Bio::Tools::SeqWords.3p
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@man man/man3p/Bio::Tools::Sigcleave.3p
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@man man/man3p/Bio::Tools::Signalp.3p
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@man man/man3p/Bio::Tools::Signalp::ExtendedSignalp.3p
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@man man/man3p/Bio::Tools::Sim4::Exon.3p
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@man man/man3p/Bio::Tools::Sim4::Results.3p
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@man man/man3p/Bio::Tools::Spidey::Exon.3p
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@man man/man3p/Bio::Tools::Spidey::Results.3p
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@man man/man3p/Bio::Tools::TandemRepeatsFinder.3p
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@man man/man3p/Bio::Tools::TargetP.3p
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@man man/man3p/Bio::Tools::Tmhmm.3p
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@man man/man3p/Bio::Tools::ipcress.3p
|
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@man man/man3p/Bio::Tools::isPcr.3p
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@man man/man3p/Bio::Tools::pICalculator.3p
|
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@man man/man3p/Bio::Tools::tRNAscanSE.3p
|
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@man man/man3p/Bio::Tree::AnnotatableNode.3p
|
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@man man/man3p/Bio::Tree::Compatible.3p
|
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@man man/man3p/Bio::Tree::DistanceFactory.3p
|
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@man man/man3p/Bio::Tree::Node.3p
|
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@man man/man3p/Bio::Tree::NodeI.3p
|
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@man man/man3p/Bio::Tree::NodeNHX.3p
|
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@man man/man3p/Bio::Tree::RandomFactory.3p
|
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@man man/man3p/Bio::Tree::Statistics.3p
|
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@man man/man3p/Bio::Tree::Tree.3p
|
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@man man/man3p/Bio::Tree::TreeFunctionsI.3p
|
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@man man/man3p/Bio::Tree::TreeI.3p
|
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@man man/man3p/Bio::TreeIO.3p
|
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@man man/man3p/Bio::TreeIO::NewickParser.3p
|
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@man man/man3p/Bio::TreeIO::TreeEventBuilder.3p
|
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@man man/man3p/Bio::TreeIO::cluster.3p
|
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@man man/man3p/Bio::TreeIO::lintree.3p
|
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@man man/man3p/Bio::TreeIO::newick.3p
|
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@man man/man3p/Bio::TreeIO::nexus.3p
|
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@man man/man3p/Bio::TreeIO::nhx.3p
|
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@man man/man3p/Bio::TreeIO::pag.3p
|
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@man man/man3p/Bio::TreeIO::phyloxml.3p
|
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@man man/man3p/Bio::TreeIO::tabtree.3p
|
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@man man/man3p/Bio::UpdateableSeqI.3p
|
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@man man/man3p/Bio::WebAgent.3p
|
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@man man/man3p/BioPerl.3p
|
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share/examples/bioperl/
|
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share/examples/bioperl/Bio-DB-GFF/
|
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share/examples/bioperl/Bio-DB-GFF/load_ucsc.pl
|
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share/examples/bioperl/align/
|
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share/examples/bioperl/align/FastAlign.pl
|
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share/examples/bioperl/align/align_on_codons.pl
|
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share/examples/bioperl/align/aligntutorial.pl
|
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share/examples/bioperl/align/simplealign.pl
|
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share/examples/bioperl/classify_hits_kingdom
|
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share/examples/bioperl/contributed/
|
|
share/examples/bioperl/contributed/nmrpdb_parse.pl
|
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share/examples/bioperl/contributed/prosite2perl.pl
|
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share/examples/bioperl/contributed/rebase2list.pl
|
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share/examples/bioperl/db/
|
|
share/examples/bioperl/db/est_tissue_query.pl
|
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share/examples/bioperl/db/get_seqs.pl
|
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share/examples/bioperl/db/rfetch.pl
|
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share/examples/bioperl/db/use_registry.pl
|
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share/examples/bioperl/generate_random_seq.pl
|
|
share/examples/bioperl/longorf.pl
|
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share/examples/bioperl/make_primers.pl
|
|
share/examples/bioperl/quality/
|
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share/examples/bioperl/quality/svgtrace.pl
|
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share/examples/bioperl/rev_and_trans.pl
|
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share/examples/bioperl/revcom_dir.pl
|
|
share/examples/bioperl/root/
|
|
share/examples/bioperl/root/README
|
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share/examples/bioperl/root/exceptions1.pl
|
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share/examples/bioperl/root/exceptions2.pl
|
|
share/examples/bioperl/root/exceptions3.pl
|
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share/examples/bioperl/root/exceptions4.pl
|
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share/examples/bioperl/searchio/
|
|
share/examples/bioperl/searchio/blast_example.pl
|
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share/examples/bioperl/searchio/custom_writer.pl
|
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share/examples/bioperl/searchio/hitwriter.pl
|
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share/examples/bioperl/searchio/hspwriter.pl
|
|
share/examples/bioperl/searchio/htmlwriter.pl
|
|
share/examples/bioperl/searchio/psiblast_features.pl
|
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share/examples/bioperl/searchio/psiblast_iterations.pl
|
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share/examples/bioperl/searchio/rawwriter.pl
|
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share/examples/bioperl/searchio/resultwriter.pl
|
|
share/examples/bioperl/searchio/waba2gff.pl
|
|
share/examples/bioperl/searchio/waba2gff3.pl
|
|
share/examples/bioperl/tk/
|
|
share/examples/bioperl/tk/gsequence.pl
|
|
share/examples/bioperl/tk/hitdisplay.pl
|
|
share/examples/bioperl/tools/
|
|
share/examples/bioperl/tools/extract_genes.pl
|
|
share/examples/bioperl/tools/gb_to_gff.pl
|
|
share/examples/bioperl/tools/gff2ps.pl
|
|
share/examples/bioperl/tools/parse_codeml.pl
|
|
share/examples/bioperl/tools/reverse-translate.pl
|
|
share/examples/bioperl/tools/run_genscan.pl
|
|
share/examples/bioperl/tools/run_primer3.pl
|
|
share/examples/bioperl/tools/seq_pattern.pl
|
|
share/examples/bioperl/tools/standaloneblast.pl
|
|
share/examples/bioperl/tree/
|
|
share/examples/bioperl/tree/paup2phylip.pl
|