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c86b04b3b8
freebsd-ports/biology
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Sunpoet Po-Chuan Hsieh c86b04b3b8 - Update to 2.6.0 
- Update MASTER_SITES
- Add my LOCAL to MASTER_SITES
- Use USE_CSTD
- Use MAKE_CMD
- Reformat pkg-descr
- Update WWW
- Take maintainership
- Bump PORTREVISION for devel/protobuf shlib change

Changes:	https://code.google.com/p/protobuf/source/browse/trunk/CHANGES.txt
2014-10-04 15:12:44 +00:00
..
ariadne Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
artemis
avida
babel
biococoa Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
biojava
blat
boinc-simap biology/boinc-simap: Deprecate, project shutting down on 2015-01-01 2014-09-19 23:05:44 +00:00
chemeq
clustalw
consed update ports: 2014-08-23 18:04:58 +00:00
crux Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
emboss
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap Fix MASTER_SITES 2014-09-05 09:25:45 +00:00
gperiodic
grappa
hmmer
iolib
jalview
lagan
lamarc
libsbml - Update to 5.10.2 2014-08-10 06:21:53 +00:00
linux-foldingathome
mafft Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
mapm3
migrate
molden Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mopac - Switch to USES=libtool, drop .la files 2014-08-06 16:05:49 +00:00
mrbayes Fix build on -current by un-clobbering LDFLAGS. Also, don't 2014-08-15 16:37:37 +00:00
mummer
muscle
ncbi-toolkit
njplot
ortep3 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-AcePerl Fix build. Hopefully it doesn't break the app. 2014-08-22 00:33:16 +00:00
p5-Bio-ASN1-EntrezGene Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl biology/p5-bioperl: fix pkg-descr sidenote link 2014-08-04 04:32:38 +00:00
p5-bioperl-run biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify 2014-08-04 08:54:10 +00:00
paml Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
phrap update ports: 2014-08-23 18:04:58 +00:00
phred update ports: 2014-08-23 18:04:58 +00:00
phylip
phyml
platon Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plink Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plinkseq - Update to 2.6.0 2014-10-04 15:12:44 +00:00
povchem
primer3
protomol Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
psi88 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-biopython Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pycogent Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pyfasta Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
python-nexus
recombine
ruby-bio - any version for RUN_DEPENDS 2014-09-21 13:44:58 +00:00
seaview Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
seqan Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
seqio
seqtools USES=execinfo 2014-08-04 23:06:21 +00:00
sim4
ssaha
t_coffee Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tinker Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
treepuzzle
treeviewx Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tRNAscan-SE Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ugene Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
velvet Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
wise
xmolwt devel/glib12 x11-toolkits/gtk12: 2014-09-13 15:11:27 +00:00
Makefile Second run at cleaning out non staged ports without pending PR 2014-09-02 12:45:01 +00:00