Yuri Victorovich 8ce2f72427 biology/py-biosig: New port: Library for reading and writing different biosignal data format		2022-12-30 00:32:02 -08:00
..
abyss
ad2vcf
artemis
augustus	biology/augustus: New port: Genome annotation tool	2022-11-25 15:55:09 -08:00
avida
babel
bamtools
bamutil
barrnap	biology/barrnap: Update descr	2022-11-24 19:12:18 -08:00
bbmap
bcftools
bedtools
bfc
bio-mocha
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.4	2022-12-11 14:06:23 -06:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.4.1	2022-12-13 18:11:56 -06:00
bioparser
biosig	biology/biosig: Update 2.4.3 -> 2.5.0	2022-12-30 00:32:02 -08:00
biosoup	biology/biosoup: Update g20201216 -> 0.10.0-2	2022-10-10 23:10:56 -07:00
biostar-tools
bolt-lmm
bowtie
bowtie2	biology/bowtie2: fix build on powerpc64*	2022-11-09 23:50:41 +01:00
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape	biology/cytoscape: Broken on armv6, armv7	2022-12-10 23:41:04 -08:00
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda	biology/fasda: Fast and simple differential analysis	2022-12-12 11:17:22 -06:00
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim	biology/fastq-trim: Update to 0.1.2	2022-12-11 15:24:05 -06:00
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk	biology/gatk: Update 4.2.6.1 -> 4.3.0.0	2022-11-26 20:06:47 -08:00
gcta
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite	biology/hhsuite: Disable on 32-bit architectures following upstream advice	2022-10-01 11:16:04 -07:00
hisat2
hmmer	biology/hmmer: Update to 3.3.2	2022-10-11 15:13:01 -05:00
htslib
hyphy	biology/hyphy: Update to 2.5.43	2022-12-25 20:17:42 -04:00
igv
infernal	biology/infernal: Update to 1.1.4	2022-10-12 11:15:54 +01:00
iolib
iqtree
jalview	biology/jalview: Update 2.11.1.4 -> 2.11.2.5	2022-10-11 23:58:18 -07:00
jellyfish
kallisto
kmcp	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
lamarc
libbigwig
libcombine	biology/libcombine: Update 0.2.19 -> 0.2.20	2022-12-08 03:11:24 -08:00
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
mafft
mapm3
megahit	biology/megahit: Add cmake patch to respect ports build flags	2022-11-24 08:10:13 -06:00
metaeuk	biology/metaeuk: Fix build on systems withour OpenMP enabled	2022-12-10 01:51:02 -08:00
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+	devel/grpc: Update to 1.49.0	2022-10-03 10:14:06 +08:00
ncbi-cxx-toolkit	graphics/proj: Update to 9.1.0	2022-11-17 09:20:57 +01:00
ncbi-entrez-direct	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
ncbi-toolkit	*/*: Bump PORTREVISION for consumers of libunistring	2022-10-22 11:36:07 +02:00
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml	biology/paml: Update to 4.10.6	2022-11-12 22:35:29 -04:00
pbbam
pbseqan
peak-classifier	biology/peak-classifier: Update to 0.1.4-5	2022-12-11 14:09:20 -06:00
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler	biology/pooler: update to 1.86	2022-12-19 08:56:15 +01:00
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython	biology/py-biopython: Update to 1.80	2022-12-05 19:45:16 +08:00
py-biosig	biology/py-biosig: New port: Library for reading and writing different biosignal data format	2022-12-30 00:32:02 -08:00
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2
py-mrcfile
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics	Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"	2022-12-06 12:12:04 +01:00
py-orange3-single-cell	Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"	2022-12-06 12:12:04 +01:00
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal	biology/py-pyrodigal: Update 2.0.2 -> 2.0.3	2022-12-22 00:43:31 -08:00
py-pysam	biology/py-pysam: Update 0.19.1 -> 0.20.0	2022-11-10 09:36:45 -08:00
py-PySCeS	biology/py-PySCeS: Update 1.0.2 -> 1.0.3	2022-09-26 01:18:31 -07:00
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius	biology/py-valerius: New port: Python bioinformatics tools	2022-10-03 21:06:22 -07:00
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
rna-seq	biology/rna-seq: Metaport for RNA-Seq analysis	2022-12-12 11:30:00 -06:00
ruby-bio
rubygem-bio	biology/rubygem-bio: Update to 2.0.4	2022-10-03 10:17:49 +08:00
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit	all: Bump PORTREVISION after lang/go{118,119} update	2022-12-11 06:17:27 -05:00
seqtk
sigviewer
sim4
slclust
smithwaterman
snpeff	biology/snpeff: Update to 5.1	2022-12-19 12:50:00 -06:00
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit	biology/taxonkit: Update 0.14.0 -> 0.14.1	2022-12-26 23:50:58 -08:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE	biology/tRNAscan-SE: Update to 2.0.11	2022-10-12 12:45:24 +01:00
ucsc-userapps
ugene
unikmer	biology/unikmer: Update 0.19.0 -> 0.19.1	2022-12-26 23:50:56 -08:00
vcf2hap
vcf-split	biology/vcf-split: Update to 0.1.5-4	2022-12-11 14:11:33 -06:00
vcflib
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	biology/py-biosig: New port: Library for reading and writing different biosignal data format	2022-12-30 00:32:02 -08:00