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freebsd-ports/science
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Mathieu Arnold 2020021309 Update ports in the s* categores to not use GH_COMMIT. 
With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
2015-05-07 17:41:23 +00:00
..
2d-rewriter
afni Fix some _DEPENDS 2015-01-24 19:27:27 +00:00
avogadro - Switch to linguisttools_build 2015-02-27 16:47:04 +00:00
bddsolve science/bddsolve: Set environment, use CXXFLAGS, cleanup 2015-02-25 12:01:52 +00:00
bft
bodr
brian
buddy Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
cdcl
cdf
cdo - Update to 1.6.8 2015-04-04 12:52:11 +00:00
cgnslib 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
cgribex - Use INSTALL_TARGET=install-strip instead of STRIP_CMD 2015-01-19 19:51:01 +00:00
checkmol
chemical-mime-data Split devel/gettext in devel/gettext-runtime and devel/gettext-tools. The 2014-11-29 18:22:32 +00:00
chemtool
chemtool-devel
clhep science/clhep: update 2.2.0.3 -> 2.2.0.4 2015-03-07 20:56:36 +00:00
colt
crf++ Reset maintainership: 2014-12-02 22:40:56 +00:00
dcl
devisor
dlpoly-classic - Update net/openmpi to 1.8.4 2014-12-26 14:24:12 +00:00
ecs Fix with on FreeBSD-8.x and 9.x: stdint.h is needed with scotch. 2015-04-08 22:07:01 +00:00
epte
fastcap
fasthenry
fisicalab Convert to USES=gnustep 2015-04-10 07:33:49 +00:00
fvcom
fvcom-mpi - Update net/openmpi to 1.8.4 2014-12-26 14:24:12 +00:00
fvm - Update to 1.8.14 2015-01-18 10:39:51 +00:00
gchemutils Update gchemutils to 0.14.10. 2015-03-27 08:45:14 +00:00
getdp
ghemical - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
ghmm Reset maintainership: 2014-12-02 22:40:56 +00:00
gnudatalanguage - Upgrade math/plplot to 5.11.0 2015-04-22 20:16:04 +00:00
gramps
grib_api - Update to 1.13.0 2015-04-02 19:13:52 +00:00
gromacs Upgrade to 5.0.4. 2015-02-17 01:46:24 +00:00
gsmc
gtamsanalyzer Convert bsd.gnustep.mk to USES=gnustep 2015-04-09 07:44:41 +00:00
gwyddion Upgrade to 2.40. 2015-02-17 01:33:03 +00:00
h5utils 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
harminv - Switch to guile2 2015-03-10 20:45:19 +00:00
hdf - Use CONFLICTS_INSTALL instead of CONFLICTS 2015-03-18 15:33:52 +00:00
hdf5 - Cleanup -lpthread/-pthread manipulation 2015-03-25 14:59:12 +00:00
hdf-java - Update to 1.8.14 2015-01-18 10:39:51 +00:00
hs-bio
InsightToolkit
isaac-cfd
jmol
jstrack Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
kalzium Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
kst2 - Switch my ports to USE_QT4=linguisttools_build and adjust Qt components 2015-02-24 21:46:28 +00:00
lamprop
libctl science/libctl: update to 3.2.2 2015-01-04 12:56:56 +00:00
libghemical - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
libint
libkml - Use net/uriparser instead of bundled one 2015-04-28 17:50:43 +00:00
liblinear Drop maintainership as I no longer use these software nor have time and 2015-01-16 17:28:13 +00:00
liboglappth
libquantum
libsvm Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
libsvm-python Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
linsmith
massxpert science/massxpert: Fix two logical errors (found by gcc5) 2015-03-22 00:06:34 +00:00
mbdyn - Use blaslapack 2015-02-05 22:51:22 +00:00
mcstas science/mcstas: USE_BISON is not used 2015-01-05 18:23:27 +00:00
mcstas-comps New port: science/mcstas-comps 2015-01-05 09:38:16 +00:00
medit cleanup plist 2014-12-20 19:35:10 +00:00
meep - Switch to guile2 2015-03-10 20:45:19 +00:00
mei
metaf2xml Remove no longer needed patch, this completes r378490. 2015-02-10 20:17:17 +00:00
minc2 Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
mol2ps cleanup plist 2014-12-20 19:35:10 +00:00
mpb 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
mpqc 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
mpqc-mpich
ncs 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
netcdf - Add GitHub repository to WWW 2015-03-21 20:07:39 +00:00
netcdf-cxx - Cleanup WRKSRC: leading v in GH_TAGNAME is removed from DISTNAME in r382120 2015-03-24 18:32:23 +00:00
netcdf-fortran - Cleanup WRKSRC: leading v in GH_TAGNAME is removed from DISTNAME in r382120 2015-03-24 18:24:27 +00:00
nifticlib
openbabel science/openbabel: Support gcc5 (taken from upstream) 2015-04-18 13:49:18 +00:00
openkim
p5-Algorithm-SVMLight Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-3DBuilder Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Bond-Find Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Canonicalize Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Elements Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-MDLMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-Mopac Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-PDB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SLN Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMARTS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMILES Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-VRML Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-XYZ Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-FormulaPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-InternalCoords Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Isotope Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MacroMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MidasPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Mok Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Mol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Pattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Reaction Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Ring Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-BUFR - Update to 1.31 2015-03-12 15:23:36 +00:00
p5-Geo-Coordinates-Converter Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-Coordinates-Converter-iArea Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-ReadGRIB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.101 2015-01-04 17:12:32 +00:00
p5-PerlMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Physics-Unit Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
paje Convert bsd.gnustep.mk to USES=gnustep 2015-04-09 07:44:41 +00:00
paraview Upgrade Paraview to 4.3.1. 2015-03-10 06:40:55 +00:00
pnetcdf - Update to 1.6.0 2015-02-18 16:20:08 +00:00
psychopy science/psychopy: update to 1.82.01 and overhaul 2015-04-29 13:53:09 +00:00
pulseview
py-cdo - Update to 1.2.5 2015-03-24 17:59:16 +00:00
py-coards
py-DendroPy
py-h5py Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
py-hcluster Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-mdp Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
py-mlpy Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-netCDF4 Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
py-obspy - Update to 0.10.1 2015-04-11 15:14:26 +00:00
py-paida
py-pupynere
py-pyaixi Canonicalize a few licenses 2014-12-07 00:07:47 +00:00
py-pydap
py-pydicom
py-pysal
py-scikit-learn Pet portlint. 2015-04-04 14:19:43 +00:00
py-scimath - Unbreak 2015-03-14 15:07:54 +00:00
py-scipy - Cleanup Makefile 2015-04-04 19:37:30 +00:00
py-ws2300
pybrain Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
pycdf Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
pynn
pyteomics
pyteomics.biolccc
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-snow
R-cran-som
rubygem-ai4r
rubygem-cdo - Add GitHub repository to WWW 2015-03-24 17:59:22 +00:00
rubygem-netcdf science/rubygem-netcdf: fix build with newer ruby-gems 2015-04-07 18:55:52 +00:00
rubygem-ruby-dcl science/rubygem-ruby-dcl: Fix category. 2015-03-09 17:36:19 +00:00
sigrok-cli
sigrok-firmware Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
sigrok-firmware-fx2lafw cleanup plist 2014-12-20 19:35:10 +00:00
sigrok-firmware-utils Switch default python3 version from 3.3 to 3.4. 2015-01-10 23:15:27 +00:00
silo - Switch to linguisttools_build 2015-02-27 16:45:50 +00:00
simlib
simsmith
step Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
svmlight - Add LICENSE 2015-03-07 03:18:42 +00:00
szip - Use LIBS 2015-02-18 16:19:52 +00:00
udunits - Update to 2.2.19 2015-04-03 17:28:32 +00:00
v_sim Upgrade to 3.7.2. 2014-12-22 14:36:52 +00:00
veusz
vmd 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
voro++
xfce4-equake-plugin Update to 1.3.7 2015-04-30 20:51:40 +00:00
xmakemol cleanup plist 2014-12-20 19:35:10 +00:00
Makefile science/rubygem-ruby-dcl: Add port 2015-03-09 16:58:12 +00:00