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abyss
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2022-09-07 23:58:51 +02:00 |
ad2vcf
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2022-09-07 23:58:51 +02:00 |
artemis
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2022-09-07 23:58:51 +02:00 |
augustus
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biology/augustus: New port: Genome annotation tool
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2022-11-25 15:55:09 -08:00 |
avida
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2022-09-07 23:58:51 +02:00 |
babel
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2022-09-07 23:58:51 +02:00 |
bamtools
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2022-09-07 23:58:51 +02:00 |
bamutil
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2022-09-07 23:58:51 +02:00 |
barrnap
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biology/barrnap: Update descr
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2022-11-24 19:12:18 -08:00 |
bbmap
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2022-09-07 23:58:51 +02:00 |
bcftools
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2022-09-07 23:58:51 +02:00 |
bedtools
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2022-09-07 23:58:51 +02:00 |
bfc
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2022-09-07 23:58:51 +02:00 |
bio-mocha
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2022-09-07 23:58:51 +02:00 |
bioawk
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2022-09-07 23:58:51 +02:00 |
biococoa
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2022-09-07 23:58:51 +02:00 |
biolibc
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biology/biolibc: Update to 0.2.4
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2022-12-11 14:06:23 -06:00 |
biolibc-tools
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biology/biolibc-tools: Update to 0.1.4.1
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2022-12-13 18:11:56 -06:00 |
bioparser
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2022-09-07 23:58:51 +02:00 |
biosig
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*/*: bump PORTREVISION after the upgrade of math/suitesparse*
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2022-11-27 12:09:57 +01:00 |
biosoup
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biology/biosoup: Update g20201216 -> 0.10.0-2
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2022-10-10 23:10:56 -07:00 |
biostar-tools
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2022-09-07 23:58:51 +02:00 |
bolt-lmm
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2022-09-07 23:58:51 +02:00 |
bowtie
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2022-09-07 23:58:51 +02:00 |
bowtie2
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biology/bowtie2: fix build on powerpc64*
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2022-11-09 23:50:41 +01:00 |
bwa
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2022-09-07 23:58:51 +02:00 |
canu
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2022-09-07 23:58:51 +02:00 |
cd-hit
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2022-09-07 23:58:51 +02:00 |
cdbfasta
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2022-09-07 23:58:51 +02:00 |
checkm
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2022-09-07 23:58:51 +02:00 |
clustal-omega
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2022-09-07 23:58:51 +02:00 |
clustalw
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2022-09-07 23:58:51 +02:00 |
cufflinks
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2022-09-07 23:58:51 +02:00 |
cytoscape
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biology/cytoscape: Broken on armv6, armv7
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2022-12-10 23:41:04 -08:00 |
ddocent
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2022-09-07 23:58:51 +02:00 |
diamond
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2022-09-07 23:58:51 +02:00 |
dsr-pdb
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2022-09-07 23:58:51 +02:00 |
edlib
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2022-09-07 23:58:51 +02:00 |
emboss
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2022-09-07 23:58:51 +02:00 |
erminej
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2022-09-07 23:58:51 +02:00 |
exonerate
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2022-09-07 23:58:51 +02:00 |
fasda
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biology/fasda: Fast and simple differential analysis
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2022-12-12 11:17:22 -06:00 |
fasta
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2022-09-07 23:58:51 +02:00 |
fasta3
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2022-09-07 23:58:51 +02:00 |
fastahack
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2022-09-07 23:58:51 +02:00 |
fastdnaml
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2022-09-07 23:58:51 +02:00 |
fastool
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2022-09-07 23:58:51 +02:00 |
fastp
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2022-09-07 23:58:51 +02:00 |
fastq-trim
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biology/fastq-trim: Update to 0.1.2
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2022-12-11 15:24:05 -06:00 |
fastqc
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2022-09-07 23:58:51 +02:00 |
fasttree
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2022-09-07 23:58:51 +02:00 |
fastx-toolkit
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2022-09-07 23:58:51 +02:00 |
figtree
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2022-09-07 23:58:51 +02:00 |
flash
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2022-09-07 23:58:51 +02:00 |
fluctuate
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2022-09-07 23:58:51 +02:00 |
freebayes
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2022-09-07 23:58:51 +02:00 |
garlic
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2022-09-07 23:58:51 +02:00 |
gatk
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biology/gatk: Update 4.2.6.1 -> 4.3.0.0
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2022-11-26 20:06:47 -08:00 |
gcta
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2022-09-07 23:58:51 +02:00 |
gemma
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2022-09-07 23:58:51 +02:00 |
generand
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2022-09-07 23:58:51 +02:00 |
gff2ps
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2022-09-07 23:58:51 +02:00 |
gffread
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2022-09-07 23:58:51 +02:00 |
gmap
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2022-09-07 23:58:51 +02:00 |
gperiodic
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2022-09-07 23:58:51 +02:00 |
graphlan
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2022-09-07 23:58:51 +02:00 |
groopm
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2022-09-07 23:58:51 +02:00 |
haplohseq
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2022-09-07 23:58:51 +02:00 |
hhsuite
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biology/hhsuite: Disable on 32-bit architectures following upstream advice
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2022-10-01 11:16:04 -07:00 |
hisat2
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2022-09-07 23:58:51 +02:00 |
hmmer
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biology/hmmer: Update to 3.3.2
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2022-10-11 15:13:01 -05:00 |
htslib
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2022-09-07 23:58:51 +02:00 |
hyphy
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biology/hyphy: Not broken on systems where OpenMP isn't available
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2022-10-01 13:59:13 -07:00 |
igv
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2022-09-07 23:58:51 +02:00 |
infernal
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biology/infernal: Update to 1.1.4
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2022-10-12 11:15:54 +01:00 |
iolib
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2022-09-07 23:58:51 +02:00 |
iqtree
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2022-09-07 23:58:51 +02:00 |
jalview
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biology/jalview: Update 2.11.1.4 -> 2.11.2.5
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2022-10-11 23:58:18 -07:00 |
jellyfish
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2022-09-07 23:58:51 +02:00 |
kallisto
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2022-09-07 23:58:51 +02:00 |
kmcp
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-12-11 06:17:27 -05:00 |
lamarc
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2022-09-07 23:58:51 +02:00 |
libbigwig
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2022-09-07 23:58:51 +02:00 |
libcombine
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biology/libcombine: Update 0.2.19 -> 0.2.20
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2022-12-08 03:11:24 -08:00 |
libgff
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2022-09-07 23:58:51 +02:00 |
libgtextutils
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2022-09-07 23:58:51 +02:00 |
libneurosim
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2022-09-07 23:58:51 +02:00 |
libnuml
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2022-09-07 23:58:51 +02:00 |
libsbml
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2022-09-07 23:58:51 +02:00 |
libsedml
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2022-09-07 23:58:51 +02:00 |
linux-foldingathome
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2022-09-07 23:58:51 +02:00 |
mafft
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2022-09-07 23:58:51 +02:00 |
mapm3
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2022-09-07 23:58:51 +02:00 |
megahit
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biology/megahit: Add cmake patch to respect ports build flags
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2022-11-24 08:10:13 -06:00 |
metaeuk
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biology/metaeuk: Fix build on systems withour OpenMP enabled
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2022-12-10 01:51:02 -08:00 |
migrate
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2022-09-07 23:58:51 +02:00 |
minimap2
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2022-09-07 23:58:51 +02:00 |
mmseqs2
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2022-09-07 23:58:51 +02:00 |
molden
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2022-09-07 23:58:51 +02:00 |
mothur
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2022-09-07 23:58:51 +02:00 |
mrbayes
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2022-09-07 23:58:51 +02:00 |
mummer
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2022-09-07 23:58:51 +02:00 |
muscle
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2022-09-07 23:58:51 +02:00 |
ncbi-blast+
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devel/grpc: Update to 1.49.0
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2022-10-03 10:14:06 +08:00 |
ncbi-cxx-toolkit
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graphics/proj: Update to 9.1.0
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2022-11-17 09:20:57 +01:00 |
ncbi-entrez-direct
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-12-11 06:17:27 -05:00 |
ncbi-toolkit
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*/*: Bump PORTREVISION for consumers of libunistring
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2022-10-22 11:36:07 +02:00 |
ncbi-vdb
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2022-09-07 23:58:51 +02:00 |
ngs-sdk
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2022-09-07 23:58:51 +02:00 |
p5-AcePerl
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2022-09-07 23:58:51 +02:00 |
p5-Bio-ASN1-EntrezGene
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Cluster
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Coordinate
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Das
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Das-Lite
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2022-09-07 23:58:51 +02:00 |
p5-Bio-DB-EMBL
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2022-09-07 23:58:51 +02:00 |
p5-Bio-DB-NCBIHelper
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2022-09-07 23:58:51 +02:00 |
p5-Bio-FeatureIO
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2022-09-07 23:58:51 +02:00 |
p5-Bio-GFF3
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Glite
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Graphics
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2022-09-07 23:58:51 +02:00 |
p5-Bio-MAGETAB
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2022-09-07 23:58:51 +02:00 |
p5-Bio-NEXUS
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Phylo
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2022-09-07 23:58:51 +02:00 |
p5-Bio-SCF
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2022-09-07 23:58:51 +02:00 |
p5-Bio-Variation
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2022-09-07 23:58:51 +02:00 |
p5-BioPerl
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2022-09-07 23:58:51 +02:00 |
p5-BioPerl-Run
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2022-09-07 23:58:51 +02:00 |
p5-transdecoder
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2022-09-07 23:58:51 +02:00 |
p5-TrimGalore
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2022-09-07 23:58:51 +02:00 |
paml
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biology/paml: Update to 4.10.6
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2022-11-12 22:35:29 -04:00 |
pbbam
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2022-09-07 23:58:51 +02:00 |
pbseqan
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2022-09-07 23:58:51 +02:00 |
peak-classifier
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biology/peak-classifier: Update to 0.1.4-5
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2022-12-11 14:09:20 -06:00 |
pear-merger
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2022-09-07 23:58:51 +02:00 |
phrap
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2022-09-07 23:58:51 +02:00 |
phred
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2022-09-07 23:58:51 +02:00 |
phyml
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2022-09-07 23:58:51 +02:00 |
picard-tools
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2022-09-07 23:58:51 +02:00 |
plink
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2022-09-07 23:58:51 +02:00 |
pooler
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2022-09-07 23:58:51 +02:00 |
primer3
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2022-09-07 23:58:51 +02:00 |
prodigal
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2022-09-07 23:58:51 +02:00 |
prodigy-lig
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2022-09-07 23:58:51 +02:00 |
protomol
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2022-09-07 23:58:51 +02:00 |
psi88
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2022-09-08 17:46:38 +02:00 |
py-bcbio-gff
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2022-09-07 23:58:51 +02:00 |
py-biom-format
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2022-09-07 23:58:51 +02:00 |
py-biopython
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biology/py-biopython: Update to 1.80
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2022-12-05 19:45:16 +08:00 |
py-bx-python
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2022-09-07 23:58:51 +02:00 |
py-crossmap
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py-cutadapt
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py-deeptools
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2022-09-07 23:58:51 +02:00 |
py-deeptoolsintervals
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2022-09-07 23:58:51 +02:00 |
py-dna-features-viewer
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2022-09-07 23:58:51 +02:00 |
py-dnaio
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py-ete3
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2022-09-07 23:58:51 +02:00 |
py-Genesis-PyAPI
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py-gffutils
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2022-09-07 23:58:51 +02:00 |
py-goatools
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py-gtfparse
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2022-09-07 23:58:51 +02:00 |
py-hits
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2022-09-07 23:58:51 +02:00 |
py-libnuml
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2022-09-07 23:58:51 +02:00 |
py-libsedml
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2022-09-07 23:58:51 +02:00 |
py-loompy
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2022-09-07 23:58:51 +02:00 |
py-macs2
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2022-09-07 23:58:51 +02:00 |
py-mrcfile
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biology/py-mrcfile: Update 1.4.2 -> 1.4.3
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2022-09-24 14:54:24 -07:00 |
py-multiqc
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2022-09-07 23:58:51 +02:00 |
py-ont-fast5-api
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2022-09-07 23:58:51 +02:00 |
py-orange3-bioinformatics
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Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"
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2022-12-06 12:12:04 +01:00 |
py-orange3-single-cell
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Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"
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2022-12-06 12:12:04 +01:00 |
py-pandas-charm
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2022-09-07 23:58:51 +02:00 |
py-py2bit
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2022-09-07 23:58:51 +02:00 |
py-pybigwig
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2022-09-07 23:58:51 +02:00 |
py-pyfaidx
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2022-09-07 23:58:51 +02:00 |
py-pyrodigal
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biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder for genomes and metagenomes
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2022-12-06 07:41:19 -08:00 |
py-pysam
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biology/py-pysam: Update 0.19.1 -> 0.20.0
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2022-11-10 09:36:45 -08:00 |
py-PySCeS
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biology/py-PySCeS: Update 1.0.2 -> 1.0.3
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2022-09-26 01:18:31 -07:00 |
py-python-libsbml
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*/*: Update path set in BUILD_DEPENDS for CMake
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2022-09-09 22:32:24 +02:00 |
py-pywgsim
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2022-09-07 23:58:51 +02:00 |
py-resdk
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2022-09-07 23:58:51 +02:00 |
py-scikit-bio
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2022-09-07 23:58:51 +02:00 |
py-valerius
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biology/py-valerius: New port: Python bioinformatics tools
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2022-10-03 21:06:22 -07:00 |
py-xenaPython
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2022-09-07 23:58:51 +02:00 |
pyfasta
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2022-09-07 23:58:51 +02:00 |
python-nexus
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2022-09-07 23:58:51 +02:00 |
rainbow
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2022-09-07 23:58:51 +02:00 |
rampler
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2022-09-07 23:58:51 +02:00 |
readseq
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2022-09-07 23:58:51 +02:00 |
recombine
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2022-09-07 23:58:51 +02:00 |
rna-seq
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biology/rna-seq: Metaport for RNA-Seq analysis
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2022-12-12 11:30:00 -06:00 |
ruby-bio
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2022-09-07 23:58:51 +02:00 |
rubygem-bio
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biology/rubygem-bio: Update to 2.0.4
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2022-10-03 10:17:49 +08:00 |
rubygem-bio-executables
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
rubygem-bio-old-biofetch-emulator
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
rubygem-bio-shell
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
sam2pairwise
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
samtools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
scrm
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seaview
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqan
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqan1
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqan3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqan-apps
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqio
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
seqkit
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-12-11 06:17:27 -05:00 |
seqtk
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
sigviewer
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Mk/Uses: always use colon for build/run suffix
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2022-09-11 12:20:14 +02:00 |
sim4
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Remove WWW lines that have been moved into Makefiles
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2022-09-08 17:46:38 +02:00 |
slclust
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
smithwaterman
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
snpeff
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
spoa
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
sra-tools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
stacks
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
star
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
stringtie
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
subread
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
tabixpp
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
taxonkit
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-12-11 06:17:27 -05:00 |
treekin
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
treepuzzle
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
trimadap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
trimmomatic
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
tRNAscan-SE
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biology/tRNAscan-SE: Update to 2.0.11
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2022-10-12 12:45:24 +01:00 |
ucsc-userapps
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
ugene
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Mk/Uses: always use colon for build/run suffix
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2022-09-11 12:20:14 +02:00 |
unikmer
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-12-11 06:17:27 -05:00 |
vcf2hap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
vcf-split
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biology/vcf-split: Update to 0.1.5-4
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2022-12-11 14:11:33 -06:00 |
vcflib
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
vcftools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
velvet
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
viennarna
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
vsearch
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biology/vsearch: Update to 2.22.1
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2022-09-21 11:24:14 -05:00 |
vt
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
wise
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
Makefile
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biology/rna-seq: Metaport for RNA-Seq analysis
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2022-12-12 11:30:00 -06:00 |