..
2d-rewriter
abinit
science/abinit: Update 8.10.3 -> 9.2.2
2021-01-02 00:42:00 +00:00
afni
science/afni: update to 20.3.04
2020-12-27 13:06:51 +00:00
agrum
science/agrum: Update 0.18.1 -> 0.18.2
2020-11-13 07:14:41 +00:00
aircraft-datcom
science/aircraft-datcom: Unbreak build with GCC 10
2020-07-04 11:07:57 +00:00
ALPSCore
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
antioch
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
apbs
science/apbs: fix build on current
2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
axom
New port: science/axom: Infrastructure for development of multi-physics applications and tools
2020-10-09 03:42:21 +00:00
bagel
bddsolve
berkeleygw
Mark BROKEN on i386 and GCC 10:
2020-11-17 21:37:49 +00:00
bodr
buddy
cdcl
science/cdcl: fix build on recent current
2020-08-28 16:09:15 +00:00
cdf
science/cdf: Unbreak build with GCC 10
2020-07-04 10:40:42 +00:00
cdk
cdo
graphics/proj: Update to 7.2.0
2020-11-18 05:27:28 +00:00
cgnslib
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
2020-12-26 11:48:36 +00:00
cgribex
checkmol
- Bump PORTREVISION. fpc was updated to 3.2.0
2020-11-25 03:13:18 +00:00
chemical-mime-data
Prefer graphics/ligvrsvg2-rust over graphics/librsvg2
2020-11-09 17:08:12 +00:00
chemps2
chemtool
science/chemtool: Update dependency transfig:print/transfig -> fig2dev:print/fig2dev
2020-10-18 17:53:03 +00:00
chemtool-devel
science/chemtool-devel: replace transfig with fig2dev
2020-10-18 20:10:56 +00:00
chrono
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
clhep
clipper
code_saturne
Upgrade to 6.1.3 and enable Python bindings for PLE.
2020-12-23 18:37:11 +00:00
colt
conduit
science/conduit: Update 0.5.1 -> 0.6.0
2020-11-03 19:57:57 +00:00
coordgenlibs
science/coordgenlibs: Update 1.4.1 -> 1.4.2
2020-10-14 08:11:18 +00:00
cp2k
cp2k-data
crf++
Clean up some things
2020-09-24 08:50:25 +00:00
dalton
science/dalton: Update 2018.2 -> 2020.0
2020-11-16 02:14:25 +00:00
dcl
science/dcl: Unbreak build with GCC 10
2020-07-04 06:54:39 +00:00
devisor
dftbplus
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:28:16 +00:00
dkh
dlib-cpp
science/dlib-cpp: Build shared library instead of static one.
2020-11-03 08:03:19 +00:00
dlpoly-classic
Mark as BROKEN with GCC 10:
2020-11-17 21:34:30 +00:00
drawxtl
dvc
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
eccodes
Update to 2.19.1
2020-11-21 09:18:19 +00:00
elk
MFH: r560369
2021-01-05 07:43:38 +00:00
elmerfem
- Upgrade cad/opencascade to 7.5.0
2020-11-14 17:25:20 +00:00
epte
science/epte: fix build on recent current
2020-08-28 20:59:08 +00:00
erd
ergo
erkale
math/armadillo: Update to 10.1.1
2020-10-29 22:30:44 +00:00
erkale-pseudopotentials
fastcap
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
2021-01-01 23:51:48 +00:00
fasthenry
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
2021-01-01 23:51:48 +00:00
fastjet
fisicalab
Add education virtual category
2020-11-20 07:16:06 +00:00
fsom
fvcom
fvcom-mpi
gabedit
science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13
2020-09-20 22:12:22 +00:00
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
gpaw-setups
gramps
Prefer graphics/ligvrsvg2-rust over graphics/librsvg2
2020-11-09 17:08:12 +00:00
grib_api
gromacs
science/gromacs: Turn the option FLOAT to OFF by default
2020-12-18 05:40:05 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
Add workaround for Fortran frontend to GCC 10.
2020-11-17 22:21:03 +00:00
hdf5
hdf5-18
healpix
hepmc3
science/hepmc3: Update 3.2.2 -> 3.2.3
2020-12-17 04:23:50 +00:00
highfive
science/highfive: Update 2.2.1 -> 2.2.2
2020-08-03 03:29:56 +00:00
hypre
science/hypre: Update 2.19.0 -> 2.20.0
2020-09-25 19:01:00 +00:00
iboview
InsightToolkit
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
isaac-cfd
science/isaac-cfd: Unbreak build with GCC 10
2020-07-04 08:00:41 +00:00
jdftx
jmol
science/jmol: Update 14.31.18 -> 14.31.20
2020-12-20 06:30:17 +00:00
jstrack
kalzium
Update KDE Applications to 20.12
2020-12-11 19:18:03 +00:00
kim-api
science/kim-api: Update 2.2.0 -> 2.2.1
2020-12-14 05:31:14 +00:00
kst2
Force to rebuild after math/matio update
2020-09-26 16:30:14 +00:00
lammps
science/lammps: Update 30Nov2020 -> 24Dec2020
2020-12-24 21:05:44 +00:00
lamprop
latte
Do not include bsd.port.mk twice
2020-12-08 09:30:36 +00:00
libaec
Use the release tag instead of commit hash
2020-10-10 07:44:37 +00:00
libccp4
Add education virtual category
2020-11-20 07:16:06 +00:00
libcint
science/libcint: Update 4.0.6 -> 4.0.7
2020-12-20 01:00:36 +00:00
libctl
science/libctl: Update to 4.5.0
2020-10-31 15:59:08 +00:00
libefp
libgeodecomp
Modify cad/scotch to support int64.
2020-12-09 19:29:19 +00:00
libghemical
libgridxc
science/libgridxc: Unbreak build by disabling the option that breaks
2020-10-13 05:55:28 +00:00
libint
libint2
libkml
liblinear
Update to 2.42
2020-11-08 17:11:37 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus
science/luscus: Fix build on 13
2020-09-21 16:24:03 +00:00
madness
Update devel/tbb to 2020.3 and bump dependent ports' revisions
2020-07-17 10:12:25 +00:00
maeparser
science/maeparser: Update 1.2.3 -> 1.2.4
2020-10-14 08:15:26 +00:00
massxpert
mbdyn
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:36:02 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:37:32 +00:00
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
- Bump PORTREVISION. fpc was updated to 3.2.0
2020-11-25 03:13:18 +00:00
molgif
molscript
molsketch
mpb
science/mpb: Update to 1.11.1
2020-10-31 16:00:18 +00:00
mpqc
MFH: r559767 r560752
2021-01-09 15:07:18 +00:00
msms
multiwfn
namd
nest
science/nest: Update 2.20.0 -> 2.20.1
2020-12-06 09:22:22 +00:00
netcdf
netcdf-cxx
netcdf-fortran
science/netcdf-fortran: Unbreak build with GCC 10
2020-07-26 17:58:54 +00:00
nifticlib
nwchem
science/nwchem: Update 7.0.1 -> 7.0.2
2020-10-15 06:41:02 +00:00
nwchem-data
science/nwchem-data: Update 7.0.1 -> 7.0.2
2020-10-14 08:19:21 +00:00
octopus
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:39:17 +00:00
openbabel
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
openkim
openkim-models
opensim-core
opensph
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
Update to 1.38
2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
paje
pcmsolver
science/pcmsolver: Update 1.2.3 -> 1.3.0
2020-12-03 10:49:31 +00:00
PETSc
Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x.
2020-12-16 16:19:30 +00:00
plumed
science/plumed: Update 2.6.2 -> 2.7.0
2021-01-03 06:32:47 +00:00
pnetcdf
pulseview
py-abipy
py-asdf
Move devel/py-semantic_version to devel/py-semantic-version
2020-12-05 13:47:27 +00:00
py-ase
science/py-ase: Update 3.20.0 -> 3.20.1
2020-09-05 06:05:19 +00:00
py-avogadrolibs
Mark BROKEN
2020-12-25 09:16:26 +00:00
py-cdo
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-chainer
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-chainer-chemistry
science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1
2020-08-17 20:05:58 +00:00
py-chempy
science/py-chempy: Update 0.7.12 -> 0.8.1
2020-12-06 22:32:36 +00:00
py-coards
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-DendroPy
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-dlib
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-eccodes
Add py-eccodes 1.0.0 (copied from py-eccodes-python)
2020-12-19 20:04:12 +00:00
py-geolinks
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-geomet
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-geometer
Update to 0.2.3
2020-07-09 18:09:16 +00:00
py-geometric
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-gpaw
Relax hardcoded paths to fix build with Python 3.8.7
2020-12-24 13:46:01 +00:00
py-GPy
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-GPyOpt
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-gsd
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-h5json
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-h5py
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-jupyter_jsmol
Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and
2020-12-22 11:48:07 +00:00
py-kim-query
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-kinematics
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-kliff
science/py-kliff: Update 0.1.6 -> 0.1.7
2020-12-23 00:56:10 +00:00
py-liac-arff
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-lifelines
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-MDAnalysis
py-MDAnalysisTests
py-mdp
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-mmtf-python
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-molmod
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-moltemplate
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-netCDF4
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-netcdf-flattener
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-obspy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-openpiv
science/py-openpiv: update to 0.22.3
2020-09-28 21:18:16 +00:00
py-paida
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-paramz
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-phono3py
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-phonopy
science/py-phonopy: Update 2.8.0 -> 2.8.1
2020-10-12 04:37:49 +00:00
py-pupynere
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pyaixi
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pycsw
Update to 2.6.0
2020-12-19 20:10:44 +00:00
py-pydicom
- Update to 2.1.2
2020-12-12 00:54:58 +00:00
py-PyFR
py-pygeodesy
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pygeometa
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pygmo2
science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139
2020-09-19 19:55:21 +00:00
py-pymatgen
py-pymol
science/py-pymol: switch to PYTHON_EXT_SUFFIX
2020-12-24 13:37:40 +00:00
py-pyosf
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-pysal
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-pyteomics
Update to 4.4.0
2020-11-21 09:20:52 +00:00
py-qcelemental
science/py-qcelemental: Update 0.16.0 -> 0.17.0
2020-10-04 19:57:16 +00:00
py-qcengine
science/py-qcengine: Update 0.16.0 -> 0.17.0
2020-10-04 19:57:59 +00:00
py-qspin
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-quantities
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-rmf
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-rmsd
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-ruffus
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-scikit-fuzzy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-scikit-learn
py-scikit-optimize
Update to 0.8.1
2020-09-06 15:37:09 +00:00
py-scikit-sparse
Relax hardcoded paths to fix build with Python 3.8.7
2020-12-24 13:46:01 +00:00
py-scimath
Unbreak bulk -a
2020-10-20 07:02:56 +00:00
py-scipy
MFH: r560348
2021-01-04 21:35:07 +00:00
py-scoria
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
py-segyio
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-SimpleSpectral
py-spglib
Drop python 2.7 support from a few ports
2020-12-28 23:02:12 +00:00
py-tensorflow
devel/icu: update to 68.1
2020-11-03 00:56:26 +00:00
py-veusz
Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to 12.8.1
2020-12-15 17:56:00 +00:00
pybrain
scipy 1.5.4 is only compatible with python 3.6+
2020-12-24 09:03:39 +00:00
pynn
- Update to 0.9.6
2020-12-31 08:19:47 +00:00
qbox
science/qbox: Update 1.72.2 -> 1.72.3
2020-12-15 06:01:05 +00:00
qcl
qiskit-aer
devel/libfmt: Update to 7.0.3
2020-09-07 21:19:41 +00:00
qmcpack
science/qmcpack: Update 3.9.2 -> 3.10.0
2020-11-13 05:10:06 +00:00
quantum-espresso
science/quantum-espresso: Update 6.6 -> 6.7.0
2020-12-03 20:51:28 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
- Update to 1.7-4
2020-10-17 14:19:29 +00:00
R-cran-eco
R-cran-Epi
- Update to 2.42
2020-11-10 11:37:03 +00:00
R-cran-epicalc
R-cran-etm
- Update to 1.1.1
2020-09-09 08:59:47 +00:00
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
MFH: r561531
2021-01-14 03:05:49 +00:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
Update to 2.2.0
2020-11-21 09:43:54 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4
graphics/proj: Update to 7.2.0
2020-11-18 05:27:28 +00:00
rubygem-rgeo-shapefile
Update to 3.0.0
2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0
2020-12-08 20:03:07 +00:00
segyio
science/segyio: Update 1.9.4 -> 1.9.5
2020-12-17 20:35:23 +00:00
siesta
Add workaround for new failure with Fortran GCC 10 frontend:
2020-11-17 22:40:45 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
science/silo: Backport of patches from Debian to support Python 3
2020-09-27 11:32:55 +00:00
simbody
simgrid
science/simgrid: add libunwind to dependencies on powerpc64
2020-09-12 19:19:49 +00:00
simint
simlib
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
2021-01-02 01:46:08 +00:00
simsmith
smoldyn
science/smoldyn: Update 2.62 -> 2.63
2020-12-20 06:45:09 +00:00
sparta
science/sparta: Update 24Jan2020 -> 6Jul2020
2020-07-13 23:41:01 +00:00
spglib
science/spglib: Update 1.15.1 -> 1.16.0
2020-08-03 07:26:08 +00:00
step
- Upgrade math/eigen3 to 3.3.8;
2020-12-12 17:04:37 +00:00
svmlight
szip
teem
tfel
Upgrade to 3.4.0
2020-12-13 14:48:11 +00:00
tfel-edf
Fix for GCC_DEFAULT=10.
2020-12-21 16:37:23 +00:00
tinker
science/tinker: Update 8.8.1 -> 8.8.3
2020-11-10 22:54:52 +00:00
udunits
v_sim
- Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)
2020-08-04 16:00:43 +00:00
vipster
science/vipster: Update 1.18b.20200514 -> 1.19.1b-14
2020-12-22 11:06:15 +00:00
vmd
voro++
votca
science/votca: Update 1.6.2 -> 1.6.3
2020-12-18 05:40:58 +00:00
wannier90
science/wannier90: Rename the shared library libwannier90.so -> libwannier.so to match the static library name that it creates
2021-01-02 00:39:14 +00:00
wwplot
wxmacmolplt
xcrysden
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
2020-12-26 11:48:36 +00:00
xdrawchem
xfce4-equake-plugin
Welcome XFCE 4.16 to the FreeBSD ports tree!
2021-01-02 16:36:33 +00:00
xtb
science/xtb: update to 6.3.3
2020-09-20 21:19:02 +00:00
yoda
science/yoda: Update 1.8.4 -> 1.8.5
2020-12-06 20:30:15 +00:00
Makefile
Remove expired ports not depending on Python 2.7:
2020-12-31 15:07:01 +00:00
4327d46356