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Author SHA1 Message Date
Brian Kubisiak
a006b7d347
gnu: lsof: Fix cross-compilation. 
* gnu/packages/lsof (lsof)[arguments]: Add LINUX_CONF_CC environment
variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-30 11:50:58 +02:00
Leo Famulari
457999ce36
gnu: Mutt: Update to 2.2.2. 
* gnu/packages/mail.scm (mutt): Update to 2.2.2.
 2022-03-29 23:33:07 -04:00
Leo Famulari
1d62b15dc1
gnu: linux-libre 4.9: Update to 4.9.309. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.309.
(linux-libre-4.9-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
555b2b0bd0
gnu: linux-libre 4.14: Update to 4.14.274. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.274.
(linux-libre-4.14-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
ef57c59046
gnu: linux-libre 4.19: Update to 4.19.237. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.237.
(linux-libre-4.19-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
5721cb284a
gnu: linux-libre 5.4: Update to 5.4.188. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.188.
(linux-libre-5.4-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
ded6beb9a7
gnu: linux-libre 5.10: Update to 5.10.109. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.109.
(linux-libre-5.10-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
916b333e86
gnu: linux-libre 5.15: Update to 5.15.32. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.32.
(linux-libre-5.15-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
c2a141156e
gnu: linux-libre 5.16: Update to 5.16.18. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.18.
(linux-libre-5.16-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
89af5cd2a9
gnu: linux-libre 5.17: Update to 5.17.1. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.1.
(linux-libre-5.17-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
cage
4b8500e7cb
gnu: gmid: Update to 1.8.2. 
* gnu/packages/web.scm (gmid): Update to 1.8.2.
[native-inputs]: Remove which.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
6c317e02ee
gnu: git-annex: Update to 10.20220322. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322.
[inputs]: Add ghc-http-client-restricted.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
e59069fe2b
gnu: Add ghc-http-client-restricted. 
* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
f40c72327e
gnu: ghc-http-client-tls: Update to 0.3.6.1. 
* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
d2984784fd
gnu: ghc-http-client: Update to 0.7.11. 
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11.
[inputs]: Add ghc-iproute.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:25 -04:00
Mădălin Ionel Patrașcu
591007f7d1
gnu: r-signac: Update to 1.6.0-2.458e647. 
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647.
[propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings,
r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 17:40:17 +02:00
Ricardo Wurmus
977a33139e
gnu: plink-ng: Update to 2.00a3-20220315. 
* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
 2022-03-29 15:33:55 +02:00
Mădălin Ionel Patrașcu
d710f01957
gnu: Add r-cytobackbone. 
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 14:03:44 +02:00
Ricardo Wurmus
6d5964e804
gnu: pigx-sars-cov2-ww: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5.
[source]: Remove patch.
[arguments]: Disable tests.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Ricardo Wurmus
847acc3206
gnu: pigx-rnaseq: Update to 0.0.20. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20.
[source]: Remove patch.
[inputs]: Add megadepth.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Efraim Flashner
3b0c9e4c20
gnu: kpeoplevcard: Use mirror URI. 
* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI.
 2022-03-29 14:43:21 +03:00
Efraim Flashner
d9710380a4
gnu: pulseaudio-qt: Use mirror URI. 
* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde
mirror URI.
 2022-03-29 14:43:20 +03:00
Efraim Flashner
67213a2759
download: Use https for main KDE source. 
* guix/download.scm (%mirrors)[kde]: Use https URIs for main KDE mirrors.
* tests/lint.scm ("mirror-url: kde suggestion"): New test.
 2022-03-29 14:43:14 +03:00
Luis Henrique Gomes Higino
53b04339fe
gnu: neovim: Update to 0.6.1. 
* gnu/packages/vim.scm (neovim): Update to 0.6.1.

Build neovim with LuaJIT in the supported platforms.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:52 +02:00
Luis Henrique Gomes Higino
1e2a25579c
gnu: Add tree-sitter. 
* gnu/packages/text-editors.scm (tree-sitter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:49 +02:00
Feng Shu
5cabe24e56
gnu: Add xfce4-dict. 
* gnu/packages/xfce.scm (xfce4-dict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:36:15 +02:00
jgart
ddfebdab86
gnu: poezio: Update to 0.13.2. 
* gnu/packages/messaging.scm (poezio): Update to 0.13.2.
[arguments]: Remove trailing boolean and use new style.
[inputs]: Remove unused python input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:30:25 +02:00
Philippe SWARTVAGHER
39b27a17ec
gnu: openmpi: Update to 4.1.2 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.2

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:27:21 +02:00
Ludovic Courtès
2ae2a15b07
gnu: slurm: Install libpmi2. 
* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through.
[arguments]: In phase 'install-libpmi', install "contribs/pmi2".
[license]: Add 'non-copyleft'.
 2022-03-29 11:26:58 +02:00
jgart
779acb0ba1
gnu: mercury: Remove trailing #T from phases and snippet. 
* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 11:17:46 +02:00
jgart
c116376542
gnu: python-livereload: Update to 2.6.3. 
* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:59:07 +02:00
jgart
6d0d176580
gnu: solfege: Remove trailing booleans. 
* gnu/packages/music.scm (solfege): Remove trailing booleans.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:56:33 +02:00
jgart
a1c11cc652
gnu: python-port-for: Remove trailing boolean. 
* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing
boolean from lambda function.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:55:02 +02:00
Brian Kubisiak
db7b8d1c9a
gnu: dnsmasq: Fix cross-compilation. 
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:52:45 +02:00
Efraim Flashner
b103d8e490
gnu: munge: Fix cross-compiling. 
* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set
path to libgcrypt prefix.  Add configure flags when cross-compiling to
assume support for pipes.
 2022-03-28 21:34:09 +03:00
Efraim Flashner
bf0389a380
gnu: freeipmi: Fix cross-compiling. 
* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for
/dev/random and /dev/urandom when cross compiling.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
f24ddb1e90
gnu: sdsl-lite: Adjust inputs. 
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move
libdivsufsort from here ...
[propagated-inputs]: ... to here.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
abd8286480
gnu: rdma-core: Fix cross-compiling. 
* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when
cross-compiling to find pkg-config.
 2022-03-28 21:34:04 +03:00
Maxim Cournoyer
e91a525858
gnu: ansible: Use GUIX_PYTHONPATH in the search path specification. 
* gnu/packages/admin.scm (ansible)[native-search-paths]: Use GUIX_PYTHONPATH.
 2022-03-28 13:52:45 -04:00
Maxim Cournoyer
7d136be00f
gnu: openboardview: Do not recursively clone source. 
This is a follow up to commit ad85ca0977.

* gnu/packages/electronics.scm (openboardview)
[source]<git-reference>: Delete the recursive? field.
 2022-03-28 13:52:45 -04:00
Mădălin Ionel Patrașcu
0a5c2816ea
gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
Ricardo Wurmus
8e994ea512
gnu: Add r-homologene. 
* gnu/packages/cran.scm (r-homologene): New variable.
 2022-03-28 15:22:49 +02:00
Efraim Flashner
738da660ff
gnu: zig: Remove unneeded patch. 
* gnu/packages/zig.scm (zig)[source]: Remove one patch.
* gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-28 10:31:54 +03:00
Efraim Flashner
58bc976b5b
gnu: gitolite: Add bash-minimal. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Remove
trailing #t.
[inputs]: Add bash-minimal.
 2022-03-28 10:07:02 +03:00
Efraim Flashner
6d780dc8bf
gnu: gitolite: Don't hardcode path to svnserve. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Adjust custom
'patch-source phase to search for svnserve in $PATH.
 2022-03-28 10:04:03 +03:00
Pier-Hugues Pellerin
fff27ded10
gnu: Go: Update to 1.17.8 [security fixes]. 
Go 1.17.8 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the crypto/x509 and net packages.  See the Go 1.17.8 milestone[1] on the
upstream issue tracker for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[1] https://github.com/golang/go/issues?q=milestone%3AGo1.17.8+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.17): Update to 1.17.8.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Pier-Hugues Pellerin
8731ed8eae
gnu: Go 1.16: Update to 1.16.15 [security fixes]. 
Go 1.16.15 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the net package. See the Go 1.16.15 milestone[1] on the upstream issue tracker
for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[2] https://github.com/golang/go/issues?q=milestone%3AGo1.16.15+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.16): Update to 1.16.15.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Liliana Marie Prikler
2344fb1097
gnu: mcomix: Install messages. 
* gnu/packages/image-viewer.scm (mcomix)[install-data]: Also install messages
subdirectory.
 2022-03-27 09:49:02 +02:00
Leo Famulari
943d4b775b
gnu: linux-libre: Add linux-libre 5.17. 
* gnu/packages/linux.scm (linux-libre-5.17-version,
linux-libre-5.17-gnu-revision, deblob-scripts-5.17,
linux-libre-5.17-pristine-source, linux-libre-5.17-source,
linux-libre-headers-5.17, linux-libre-5.17): New variables.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
 2022-03-26 17:59:57 -04:00
Leo Famulari
50ccffb89e
gnu: Borg: Update to 1.2.0. 
* gnu/packages/backup.scm (borg): Update to 1.2.0.
[source]: Adjust the list of Cython files to rebuild. Remove an obsolete
substitution. Delete the bundled xxhash. Blake2 is no longer bundled.
[native-inputs]: Add python-dateutil.
[inputs]: Add xxhash. Add python-msgpack-1.2. Remove libb2.
[arguments]: Export BORG_LIBXXHASH_PREFIX to ensure the build script can find
xxhash. Adjust the list of skipped tests and make the custom 'check' phase honor
tests?. Install some more documentation.
 2022-03-26 17:53:37 -04:00