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Author SHA1 Message Date
Brett Gilio
638850e68c
gnu: emacs-helm-org: Update to 1.0-2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org): Update to 1.0-2.
 2019-12-15 15:22:21 -06:00
Brett Gilio
426ab00aae
gnu: emacs-helm: Update to 3.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.6.0.
 2019-12-15 15:19:31 -06:00
Brett Gilio
fb4b5d2ea9
gnu: emacs-writeroom: Update to 3.9. 
* gnu/packages/emacs-xyz.scm (emacs-writeroom): Update to 3.9.
 2019-12-15 15:15:22 -06:00
Brett Gilio
467ad2120a
gnu: emacs-rainbow-delimiters: Update to 2.1.4. 
* gnu/packages/emacs-xyz.scm (emacs-rainbow-delimiters): Update to 2.1.4.
 2019-12-15 15:13:42 -06:00
Vagrant Cascadian
bc685e1ca3
gnu: diffoscope: Add support for zstd compression. 
* gnu/packages/diffoscope (diffoscope)[native-inputs]: Add zstd.
  [arguments]: Add add-known-tools phase with support for zstd.
 2019-12-15 13:01:10 -08:00
Brett Gilio
5487ddac22
gnu: emacs-find-file-in-project: Update to 5.7.7. 
* gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 5.7.7.
[arguments]: Modify tests to use ert.
 2019-12-15 14:58:18 -06:00
Brett Gilio
317cc18180
gnu: emacs-elfeed: Update to 3.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.3.0.
 2019-12-15 14:44:35 -06:00
Brett Gilio
e3c4fcaae3
gnu: emacs-org-trello: Update to 0.8.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-trello): Update to 0.8.1.
 2019-12-15 14:33:08 -06:00
Brett Gilio
503f9aadc4
gnu: emacs-jedi: Update to 0.2.8. 
* gnu/packages/emacs-xyz.scm (emacs-jedi): Update to 0.2.8.
 2019-12-15 14:32:48 -06:00
Brett Gilio
0da921dce7
gnu: emacs-ob-ipython: Update to 20180224. 
* gnu/packages/emacs-xyz.scm (emacs-ob-ipython): Update to 20180224.
 2019-12-15 14:15:52 -06:00
Brett Gilio
1bd94e3a65
gnu: emacs-rich-minority: Update to 1.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-rich-minority): Update to 1.0.3.
 2019-12-15 14:11:39 -06:00
Brett Gilio
44e7222bf7
gnu: emacs-paren-face: Update to 1.0.4. 
* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.4.
 2019-12-15 14:09:25 -06:00
Brett Gilio
6694b67f4f
gnu: emacs-undercover: Update to 0.6.1. 
* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.6.1.
 2019-12-15 14:07:26 -06:00
Brett Gilio
12bf15ffe4
gnu: emacs-fill-column-indicator: Update to 1.90. 
* gnu/packages/emacs-xyz.scm (emacs-fill-column-indicator): Update to 1.90.
 2019-12-15 14:00:06 -06:00
Brett Gilio
00895524ec
gnu: emacs-direnv: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 2.0.0.
 2019-12-15 13:52:58 -06:00
Brett Gilio
b425426236
gnu: emacs-async: Update to 1.9.4. 
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.4.
 2019-12-15 13:50:19 -06:00
Brett Gilio
9a27551b39
gnu: emacs-doom-modeline: Update to 2.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.2.
 2019-12-15 13:43:46 -06:00
Vagrant Cascadian
6a65185ee4
gnu: diffoscope: Update to 133. 
* gnu/packages/diffoscope (diffoscope): Update to 133.
 2019-12-15 10:19:04 -08:00
Carlo Zancanaro
514001e9ce
gnu: abcl: Update to 1.6.0. 
* gnu/packages/java.scm (abcl): Update to 1.6.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-12-15 18:44:43 +02:00
Mathieu Othacehe
a13116b60c
gnu: texinfo: Add missing include. 
* gnu/packages/texinfo.scm (info-reader): Fix missing include, introduced by
f5d670606354728a453b8cc962c4f85516007d13.
 2019-12-15 17:11:18 +01:00
Pierre Neidhardt
97115892b9
gnu: Add theorafile. 
* gnu/packages/video.scm (theorafile): New variable.
 2019-12-15 16:21:19 +01:00
Mathieu Othacehe
614a1e3fa2
gnu: info-reader: Fix cross-compilation. 
* gnu/packages/texinfo.scm (info-reader)[arguments]: Add keep-only-info-reader
phase to inherited texinfo package phases, so that fix-cross-configure phase
is preserved.
 2019-12-15 15:48:15 +01:00
Ricardo Wurmus
6e10ac0780
gnu: r-destiny: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b4ee414880
gnu: r-siggenes: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
4efdac562b
gnu: r-bumphunter: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
dfd4287cba
gnu: r-minfi: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b57cffb974
gnu: r-methylumi: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
8f7bc872e1
gnu: r-lumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus
a2877d6970
gnu: r-linnorm: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
1b890c3231
gnu: r-ioniser: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
a18f325e0a
gnu: r-triform: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
9b72bbf784
gnu: r-varianttools: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
9f218627d6
gnu: r-heatplus: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
c245ec3d49
gnu: r-gosemsim: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
5ed767521c
gnu: r-anota: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
869965df1c
gnu: r-sigpathway: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
b4e1268c7b
gnu: r-fgsea: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
166b3c2da6
gnu: r-dose: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus
0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
6374984a20
gnu: r-mlinterfaces: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
fc4a9dd579
gnu: r-annaffy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
4ed18ddc0f
gnu: r-a4core: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
102b982cbe
gnu: r-a4classif: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
977a7802c1
gnu: r-a4reporting: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
85c945aa97
gnu: r-a4base: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
344eb4c404
gnu: r-a4: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus
aef4b34669
gnu: r-abseqr: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
32b471f4a7
gnu: r-bacon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
6dfe5056c9
gnu: r-rgadem: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
35a1b3ec4c
gnu: r-motiv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
dda936ca9a
gnu: r-motifstack: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
e89f16e646
gnu: r-genomicscores: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
36aecb2105
gnu: r-atacseqqc: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
4997e0254a
gnu: r-gofuncr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
307667c4ef
gnu: r-abaenrichment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
eda4908556
gnu: r-annotationtools: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a35d27450
gnu: r-aucell: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
ca7192a1c9
gnu: r-ebimage: Update to 4.28.1. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
3796e2442b
gnu: r-yamss: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
580e434267
gnu: r-yapsa: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
2f90bab8d1
gnu: r-gcrma: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
eb697ff5bb
gnu: r-quantro: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
94fdea1267
gnu: r-yarn: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
f0dd0fec40
gnu: r-roar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1f0101ae01
gnu: r-xbseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4fb52345b2
gnu: r-xcms: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
92f40538d3
gnu: r-wrench: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1a2569e4cc
gnu: r-widgettools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
316bcd07a8
gnu: r-webbioc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
18b93e0350
gnu: r-zfpkm: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
053a2127bc
gnu: r-genomegraphs: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e13f977312
gnu: r-wavetiling: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e2f481dad0
gnu: r-variancepartition: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
0b0906c845
gnu: r-htqpcr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
0726645eca
gnu: r-genefilter: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.68.0.
[propagated-inputs]: Remove r-s4vectors and add r-biocgenerics.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
867018e138
gnu: r-deseq2: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.26.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
ebc81e300c
gnu: r-dexseq: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.32.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
12c4555d44
gnu: r-annotationforge: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.28.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
33a2acb757
gnu: r-rbgl: Update to 1.62.1. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.62.1.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
d2661841be
gnu: r-gseabase: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.48.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
4afcf941d2
gnu: r-category: Update to 2.52.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.52.1.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
545730891e
gnu: r-gostats: Update to 2.52.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.52.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
f29c9f0d33
gnu: r-shortread: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
58fd68b299
gnu: r-systempiper: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.20.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
f8f815667d
gnu: r-grohmm: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.20.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
74d59b6748
gnu: r-biocviews: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.54.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
ef96154433
gnu: r-biocstyle: Update to 2.14.2. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.2.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
7758d5205c
gnu: r-bioccheck: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.22.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
d37daf8929
gnu: r-s4vectors: Update to 0.24.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.1.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
d2723484f6
gnu: r-iranges: Update to 2.20.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.1.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
937f3a46eb
gnu: r-genomeinfodb: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da03fa3c90
gnu: r-edger: Update to 3.28.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
8f5d2c3abc
gnu: r-variantannotation: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.32.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
eea491e5c6
gnu: r-limma: Update to 3.42.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus
da6edb199d
gnu: r-xvector: Update to 0.26.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.26.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
0202b13e8b
gnu: r-genomicranges: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.38.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
8d1c3666d7
gnu: r-biobase: Update to 2.46.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.46.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
de9ae3e7b1
gnu: r-annotationdbi: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.48.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
68a9d9f26a
gnu: r-biomart: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.42.0.
[propagated-inputs]: Add r-biocfilecache, r-openssl, and r-rappdirs; remove
r-rcurl.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
5854a4a265
gnu: r-biocparallel: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
15cd3f6ef5
gnu: r-biostrings: Update to 2.54.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.54.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
e1d681e2af
gnu: r-rsamtools: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.1.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
4ada4fb745
gnu: r-delayedarray: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
264db038c6
gnu: r-summarizedexperiment: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus
55e515d206
gnu: r-genomicalignments: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.22.1.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
15187da9e7
gnu: r-rtracklayer: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.46.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
9fec340391
gnu: r-genomicfeatures: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
323f42b2ca
gnu: r-topgo: Update to 2.37.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.37.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e3a2b96c80
gnu: r-bsgenome: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.54.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
bca1c45e4e
gnu: r-impute: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.60.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
b590742362
gnu: r-seqpattern: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.18.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
e06b34e8c6
gnu: r-genomation: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.18.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a9790190d1
gnu: r-seqlogo: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.52.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
a5f9b30338
gnu: r-motifrg: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.30.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
2f15045400
gnu: r-zlibbioc: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.32.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
108c03a8eb
gnu: r-rhtslib: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.0.
[propagated-inputs]: Add curl.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus
7b6c008960
gnu: r-bamsignals: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.18.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
f375d74072
gnu: r-rcas: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3964f2c24e
gnu: r-mutationalpatterns: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3a0229eba0
gnu: r-tximport: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
126539d1ae
gnu: r-rhdf5: Update to 2.30.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.30.1.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
4e5c217684
gnu: r-pcamethods: Update to 1.78.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.78.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
589939937d
gnu: r-msnbase: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
597aeb8a34
gnu: r-msnid: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.20.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
3ccf1e3c20
gnu: r-aroma-light: Update to 3.16.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.16.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
783bbe3ace
gnu: r-deseq: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.38.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus
0a6704e226
gnu: r-edaseq: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.20.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2beffcb558
gnu: r-interactivedisplaybase: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.24.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
6339ea22f1
gnu: r-annotationhub: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.18.0.
[propagated-inputs]: Add r-biocversion.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
c21bf901e2
gnu: r-fastseg: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.32.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
fedba48bb5
gnu: r-keggrest: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.26.1.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
b342b20a24
gnu: r-gage: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.36.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
48c7ee93b7
gnu: r-genomicfiles: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.22.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
dac706c322
gnu: r-complexheatmap: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.2.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
2edb116c1c
gnu: r-dirichletmultinomial: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.28.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e107f3df54
gnu: r-ensembldb: Update to 2.10.2. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.10.2.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
e89032667d
gnu: r-organismdbi: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.28.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
866810e686
gnu: r-biovizbase: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.34.1.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus
81600df302
gnu: r-ggbio: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.34.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
89a41696ab
gnu: r-gqtlbase: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
67d4fd523d
gnu: r-erma: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.2.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
14eb0978a8
gnu: r-snpstats: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.36.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
6fff104191
gnu: r-ldblock: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.16.0.
[propagated-inputs]: Remove r-go-db and r-homo-sapiens.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
cfa93a30b4
gnu: r-gqtlstats: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
d57b6b4bae
gnu: r-gviz: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
2e13f10e89
gnu: r-sushi: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.24.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
28329991b0
gnu: r-gwascat: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
0a16021241
gnu: r-hitc: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.30.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
8db2915900
gnu: r-fithic: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.12.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus
7557bd0cce
gnu: r-hdf5array: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
1f5d262cfd
gnu: r-rhdf5lib: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
8804e4b48e
gnu: r-beachmat: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
376f2f35b6
gnu: r-singlecellexperiment: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
bf23416fe1
gnu: r-scater: Update to 1.14.5. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
964634fa44
gnu: r-scran: Update to 1.14.5. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
c81ccd3076
gnu: r-delayedmatrixstats: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
758dfc61ee
gnu: r-mzid: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
dc9d4832b9
gnu: r-vsn: Update to 3.54.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
af87ac3aa7
gnu: r-annotationfilter: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
43058ca656
gnu: r-chipseq: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
746e1f062e
gnu: r-copywriter: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus
32f6059635
gnu: r-affy: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
51ca216bdf
gnu: r-affyio: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
065c305ca5
gnu: r-methylkit: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2a6ce98b17
gnu: r-sva: Update to 3.34.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
d12328f9fe
gnu: r-protgenerics: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
3381dc4b5c
gnu: r-mzr: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
418d72142c
gnu: r-illuminaio: Update to 0.28.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
db85744ef3
gnu: r-geoquery: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
048a43d6a5
gnu: r-scone: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2f223b2115
gnu: r-scdd: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
81a125cdb6
gnu: r-noiseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
9732e690a5
gnu: r-monocle: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
dc5237f85e
gnu: r-mast: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
a5cc1f104b
gnu: r-icobra: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
0383bd05ce
gnu: r-ihw: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
a9649c4138
gnu: r-ebseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
96030bf718
gnu: r-deds: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
bba70cda0a
gnu: r-dnacopy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
eb3fd3825c
gnu: r-copynumber: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
84825e5523
gnu: r-chipexoqual: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2e17cbd733
gnu: r-savr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
c88448d4b8
gnu: r-biocsingular: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
12e2aa96dc
gnu: r-biocneighbors: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
efd0934733
gnu: r-ruvseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2d86dc2062
gnu: r-dnabarcodes: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
74bb4cdf57
gnu: r-inspect: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
565bb84b31
gnu: r-plgem: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
9c071144a8
gnu: r-rots: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
728571fbc6
gnu: r-glimma: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
ab7f3cbbeb
gnu: r-goseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b2b5b03115
gnu: r-ctc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b701ed6e83
gnu: r-genomicinteractions: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
bb841742dd
gnu: r-interactionset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
595b6c9a89
gnu: r-riboseqr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
88af7049ea
gnu: r-riboprofiling: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b0897fbf95
gnu: r-chipcomp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
d77228232d
gnu: r-bayseq: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
23ce5ad1d6
gnu: r-qdnaseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8f2a4ea18b
gnu: r-cghcall: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8341f7062e
gnu: r-cghbase: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b6c2f098ba
gnu: r-marray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
cf8968d7e6
gnu: r-chippeakanno: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
70eb483a28
gnu: r-graph: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
16d49c2a7c
gnu: r-multtest: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.42.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
ba74434fc4
gnu: r-ripseeker: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
73883f0f14
gnu: r-diffbind: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.14.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
bcf711b58b
gnu: r-qvalue: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
084c651cbf
gnu: r-oligo: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7778e91a2d
gnu: r-geneplotter: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
2e73ea955b
gnu: r-regioner: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
ddd3673928
gnu: r-hpar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7a111924ee
gnu: r-annotate: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
ce5162d09d
gnu: r-affxparser: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
1693534f76
gnu: r-affycoretools: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f561421d04
gnu: r-affycontam: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c2fa63e905
gnu: r-affycompatible: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
5d87f12615
gnu: r-affycomp: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
2c8433ca0a
gnu: r-depecher: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
7a62d5e0c2
gnu: Add r-cytoml. 
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
6aedc80514
gnu: Add r-opencyto. 
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
b700b9ec21
gnu: Add r-flowstats. 
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
82c1111745
gnu: Add r-flowworkspace. 
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f1964519e7
gnu: Add r-rprotobuflib. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c8ab9eb1b4
gnu: Add r-flowclust. 
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
0dd4b7d732
gnu: Add r-flowviz. 
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
dbfce8ff5b
gnu: r-rgraphviz: Update to 2.30.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.30.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
9d1099eb07
gnu: r-preprocesscore: Update to 1.48.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.48.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
257b3b812c
gnu: Add r-knn-covertree. 
* gnu/packages/cran.scm (r-knn-covertree): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
5aa7e882fa
gnu: Add r-ggplot-multistats. 
* gnu/packages/cran.scm (r-ggplot-multistats): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
f5f440312d
gnu: Add r-ggcyto. 
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
15ac0c195c
gnu: Add r-ncdfflow. 
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4aee31dcb
gnu: Add r-cytolib. 
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4a22ccaaa
gnu: Add r-multidataset. 
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
e5d722fb4c
gnu: Add r-biocversion. 
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
eb15df8dea
gnu: Add r-qqman. 
* gnu/packages/cran.scm (r-qqman): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b5b6e74e15
gnu: Add r-idpmisc. 
* gnu/packages/cran.scm (r-idpmisc): New variable.
 2019-12-15 15:38:51 +01:00
Björn Höfling
58c3a4f596
gnu: java-svg-salamander: Return #t from snippet. 
* gnu/packages/java.scm (java-svg-salamander)[origin]:
Return #t from snippet.
 2019-12-15 12:31:35 +01:00
Brett Gilio
4fb8e2744a
gnu: emacs-cider: Update home-page. 
* gnu/packages/emacs-xyz.scm (emacs-cider)[home-page]: Change to https://cider.mx/.
 2019-12-14 18:46:06 -06:00
Brett Gilio
7d4d881266
gnu: emacs-cider: Update to 0.23.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.23.0.
[propagated-inputs]: Add emacs-seq, emacs-parseedn.
 2019-12-14 18:45:22 -06:00
Brett Gilio
47a9a59270
gnu: Add emacs-parseedn. 
* gnu/packages/emacs-xyz.scm (emacs-parseedn): New variable.
 2019-12-14 18:44:50 -06:00
Brett Gilio
586e1611b9
gnu: Add emacs-parseclj. 
* gnu/packages/emacs-xyz.scm (emacs-parseclj): New variable.
 2019-12-14 18:44:25 -06:00
Konrad Hinsen
4ac5d4fee1
gnu: Add gfortran-toolchain 
* gnu/packages/commencement.scm: (gfortran-toolchain): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 00:34:05 +01:00
Ludovic Courtès
178e550034
gnu: bootloaders: Avoid #:select on (gnu packages …) module. 
* gnu/packages/bootloaders.scm: Remove use of #:select.
 2019-12-15 00:34:05 +01:00
Brett Gilio
9d97a11f04
gnu: emacs-telega: Update to 0.5.3-1. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.3-1.
[version]: Correct the version number used in the package elisp code itself.
 2019-12-14 14:07:22 -06:00
Alex Griffin
d900e1f675
gnu: Add htmlcxx. 
* gnu/packages/web.scm (htmlcxx): New variable.
 2019-12-14 13:22:54 -06:00
Brett Gilio
e9d8dee6c3
gnu: emacs-doom-themes: Update to 2.1.6-2. 
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-2.
[arguments]: Disable byte-compilation regarding issue in upstream.
<https://github.com/hlissner/emacs-doom-themes/issues/314>.
 2019-12-14 13:06:07 -06:00
Julien Lepiller
5c1bd7b8d1
gnu: josm: Update to 15553. 
* gnu/packages/geo.scm (josm): Update to 15553.
 2019-12-14 17:43:17 +01:00
Mathieu Othacehe
94de8d0a7f
gnu: Add u-boot-pine64-lts-bootloader. 
* gnu/bootloader/u-boot.scm (u-boot-pine64-lts-bootloader): New variable.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
db78fc0679
gnu: bootloaders: Fix make-u-boot-sunxi64-package cross-compilation. 
* gnu/packages/bootloaders.scm (make-u-boot-sunxi64-package)[arguments]:
Search in native-inputs to fix cross-compilation.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
af58b275c9
gnu: Add u-boot-pine64-lts. 
* gnu/packages/bootloaders.scm (u-boot-pine64-lts): New variable.
 2019-12-14 17:41:09 +01:00