gnu: Add r-cytoml.
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
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@ -40,6 +40,7 @@
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages web)
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#:use-module (gnu packages xml)
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#:use-module (srfi srfi-1))
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@ -5627,6 +5628,53 @@ package.")
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sequential way to mimic the manual gating strategy.")
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(license license:artistic2.0)))
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(define-public r-cytoml
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(package
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(name "r-cytoml")
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(version "1.12.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "CytoML" version))
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(sha256
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(base32
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"0m8x18wkvis85cawv7j07pk59w76wnzy93ia99gd24j82z4h97p1"))))
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(properties `((upstream-name . "CytoML")))
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(build-system r-build-system)
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(inputs
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`(("libxml2" ,libxml2)))
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(propagated-inputs
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`(("r-base64enc" ,r-base64enc)
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("r-bh" ,r-bh)
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("r-biobase" ,r-biobase)
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("r-corpcor" ,r-corpcor)
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("r-cytolib" ,r-cytolib)
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("r-data-table" ,r-data-table)
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("r-dplyr" ,r-dplyr)
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("r-flowcore" ,r-flowcore)
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("r-flowworkspace" ,r-flowworkspace)
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("r-ggcyto" ,r-ggcyto)
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("r-graph" ,r-graph)
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("r-jsonlite" ,r-jsonlite)
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("r-lattice" ,r-lattice)
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("r-ncdfflow" ,r-ncdfflow)
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("r-opencyto" ,r-opencyto)
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("r-plyr" ,r-plyr)
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("r-rbgl" ,r-rbgl)
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("r-rcpp" ,r-rcpp)
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("r-rcppparallel" ,r-rcppparallel)
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("r-rgraphviz" ,r-rgraphviz)
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("r-rprotobuflib" ,r-rprotobuflib)
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("r-runit" ,r-runit)
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("r-xml" ,r-xml)
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("r-yaml" ,r-yaml)))
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(home-page "https://github.com/RGLab/CytoML")
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(synopsis "GatingML interface for cross platform cytometry data sharing")
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(description
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"This package provides an interface to implementations of the GatingML2.0
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standard to exchange gated cytometry data with other software platforms.")
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(license license:artistic2.0)))
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(define-public r-flowsom
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(package
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(name "r-flowsom")
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