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Author SHA1 Message Date
jgart
a7b40dff2f
gnu: cl-3bmd: Update to 0.0.0-3.4e08d82. 
* gnu/packages/lisp-xyz.scm (sbcl-3bmd): Update to 0.0.0-3.4e08d82.
  [native-inputs]: Add sbcl-fiasco.
  [inputs]: Add python, python-pygments, and use newer inputs guix style.
  [arguments]: Add 'fix-python3-path' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-17 10:01:59 +01:00
jgart
b999ce74ba
gnu: cl-envy: Update to 26a7faa. 
* gnu/packages/lisp-xyz.scm (sbcl-envy): Update to 26a7faa.
  [native-inputs]: Uncomment test inputs and use new style.
  [arguments]: Add 'asd-systems' parameter, Remove 'fix-tests' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-17 09:32:39 +01:00
Ricardo Wurmus
24f7c64bb2
gnu: Add r-ggtern. 
* gnu/packages/cran.scm (r-ggtern): New variable.
 2022-03-17 07:46:19 +01:00
Carl Dong
34e9eae68c
gnu: cross-base: Don't specify mingw --with-newlib 
Previous to this commit, we added a --with-newlib configure flag to
cross-gcc when cross-newlib?, but cross-newlib? is true only when
target-mingw?.

It turns out that specifying --with-newlib disables the
GLIBCXX_CROSSCONFIG check, which is used to detect
_GLIBCXX_HAVE__WFOPEN, which is required in C++17 std::filesystem for
mingw-w64 systems.

Additional context: In gnu/packages/embedded.scm, --with-newlib is
specified explicitly when we're actually using newlib, which seems like
the correct way of handling it.

Situation in other distros:
- Debian's gcc-mingw-w64 doesn't specify --with-newlib
- Fedora's mingw64-gcc-c++ explicitly specifies --without-newlib

Chesterton's fence: Chatting with janneke, who originally added this
mechanism, reveals that this flag is not only no longer required, but
also that removing it doesn't break his guile-mingw builds. See IRC logs
of #guix for 2022-02-15.

* gnu/packages/cross-base.scm (cross-gcc-arguments): Don't check for and
specify --with-newlib.
(cross-libc): Check for mingw and use mingw-w64 directly.
(cross-newlib?): Remove, unexport.
(native-libc): Remove.
 2022-03-16 22:13:48 -04:00
Tobias Geerinckx-Rice
0c6c957a01
gnu: knot: Update to 3.1.6. 
* gnu/packages/dns.scm (knot): Update to 3.1.6.
 2022-03-13 01:00:00 +01:00
Leo Famulari
69d3896c0f
gnu: expat: Update to 2.4.7. 
This fixes some regressions in 2.4.5 and 2.4.6:

https://www.xml.com/news/2022-02-expat-246/
https://www.xml.com/news/2022-03-expat-247/

* gnu/packages/xml.scm (expat/fixed): Update to 2.4.7.
 2022-03-16 17:14:19 -04:00
Leo Famulari
62ea3d510f
gnu: OpenSSL 3: Update to 3.0.2 [fixes CVE-2022-0778]. 
For more information about this vulnerability:

https://www.openssl.org/news/secadv/20220315.txt

* gnu/packages/tls.scm (openssl-3.0): Update to 3.0.2.
 2022-03-16 17:14:19 -04:00
Leo Famulari
139a5cab04
gnu: OpenSSL: Update to 1.1.1n [fixes CVE-2022-0778]. 
For more information about this vulnerability:

https://www.openssl.org/news/secadv/20220315.txt

* gnu/packages/tls.scm (openssl/fixed): Update to 1.1.1n.
 2022-03-16 17:14:08 -04:00
Tobias Geerinckx-Rice
3076e69577
gnu: isc-dhcp: Update bundled BIND to 9.11.37. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]:
Update bind-source-tarball to 9.11.37.
 2022-03-13 01:00:37 +01:00
Tobias Geerinckx-Rice
880e70e8b6
gnu: bind: Update to 9.16.27 [fixes CVE-2022-0396]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.27.
 2022-03-13 01:00:00 +01:00
Tobias Geerinckx-Rice
1ef6203630
gnu: cdrtools: Don't return #t from snippet. 
* gnu/packages/cdrom.scm (cdrtools)[source]: Don't return #t from snippet.
 2022-03-13 01:00:01 +01:00
Tobias Geerinckx-Rice
0ac0f43a90
gnu: cdrtools: Use G-expressions. 
* gnu/packages/cdrom.scm (cdrtools)[arguments]:
Rewrite as G-expressions.  Don't return #t from phases.
 2022-03-13 01:00:00 +01:00
Tobias Geerinckx-Rice
b97a8b8941
gnu: cdrtools: Link dynamically. 
* gnu/packages/cdrom.scm (cdrtools)[arguments]: Add "LINKMODE=dynamic" to
the #:configure-flags.
 2022-03-13 01:00:00 +01:00
Tobias Geerinckx-Rice
53ac77389c
gnu: cdrtools: Prepare for cross-compilation. 
* gnu/packages/cdrom.scm (cdrtools)[arguments]: Use CC-FOR-TARGET.
 2022-03-13 01:00:00 +01:00
Efraim Flashner
21457fb31e
gnu: ruby-stackprof: Adjust skipped test on powerpc-linux. 
* gnu/packages/ruby.scm (ruby-stackprof)[arguments]: On powerpc-linux
adjust the 'skip-dubious-test phase.
 2022-03-16 20:24:52 +02:00
Andrew Tropin
d74d18437e
gnu: i2pd: Update to 2.41.0. 
* gnu/packages/i2p.scm (i2pd): Update to 2.41.0.
  [arguments]: Remove trailing slash to match all libi2pd entries.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-16 16:48:11 +01:00
jgart
4637b6952c
gnu: cl-mito: Update to 47ba486. 
* gnu/packages/lisp-xyz.scm (sbcl-mito): Update to 47ba486.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-16 16:48:11 +01:00
Guillaume Le Vaillant
2da3c84ab7
gnu: opencpn: Update to 5.6.0. 
* gnu/packages/geo.scm (opencpn): Update to 5.6.0.
  [inputs]: Add alsa-utils, eudev, jasper, libjpeg-turbo and libusb.
 2022-03-16 16:48:11 +01:00
Tanguy Le Carrour
797e308047
gnu: Add tessen. 
* gnu/packages/password-utils.scm (tessen): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:53 +01:00
Denis 'GNUtoo' Carikli
d7a30c6e1d
gnu: matterbridge: update to 1.24.0 
* gnu/packages/messaging.scm (matterbridge): Update to 1.24.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:52 +01:00
Pradana AUMARS
fee68a93d8
gnu: Add python-mathlibtools. 
* gnu/packages/lean.scm (python-mathlibtools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:52 +01:00
Jai Vetrivelan
f1aa1f3412
gnu: dunst: Update to 1.8.1. 
* gnu/packages/dunst.scm (dunst): Update to 1.8.1.
* gnu/packages/patches/dunst-1.7.3-fix-crash.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:52 +01:00
Denis 'GNUtoo' Carikli
4ba792fa15
gnu: python-gitlab: update to 3.2.0 
* gnu/packages/python-web.scm (python-gitlab): Update to 3.2.0

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:52 +01:00
Ludovic Courtès
47960b5526
system: Improve 'read-boot-parameters' incompatibility diagnostic. 
Previously, when reading an incompatible "parameters" file, 'guix
system' would print a warning and then crash with a wrong-type-arg
backtrace because code expects 'read-boot-parameters' to always return a
<boot-parameters> record.

* gnu/system.scm (read-boot-parameters): Upon incompatibility, raise an
error instead of returning #f.  Also raise a '&fix-hint' condition.
* tests/boot-parameters.scm ("read, construction, mandatory fields"):
Define 'test-read-boot-parameters' as a macro; expect
'formatted-message?' exceptions rather than #f returns.
 2022-03-16 15:48:52 +01:00
Brendan Tildesley
5d4af22ef2
gnu: cryfs: Update to 0.11.2. 
* gnu/packages/crypto.scm (cryfs): Update to 0.11.2.
[arguments]: Fix build with boost 1.77

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:52 +01:00
Fatima Toothpaste
66a4a5ecb2
gnu : nicotine+: Update to 3.2.1. 
* gnu/packages/nicotine.scm (nicotine+): Update to 3.2.1.
  [source]: Delete network requried tests in snippet.
  [arguments]: Remove trailing #t.
  Replae 'check phase to run proper test.
  [inputs]: Add bash-minimal, gspell, libappindicator.
  [native-inputs]: Remove python-pytest. Add xvfb-run.
  [home-page]: Update URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-16 15:48:51 +01:00
Efraim Flashner
53d986215f
Revert "gnu: %boot3-inputs: Add missing input." 
This reverts commit ed2ca2dcb5.

This is no longer needed after the gcc STARTFILE_PREFIX_SPEC commit.
 2022-03-16 12:17:09 +02:00
Efraim Flashner
030900747b
Revert "gnu: Add %final-inputs-riscv64." 
This reverts commit 0444be8689.

This is no longer necessary after the gcc STARTFILE_PREFIX_SPEC commit.
 2022-03-16 12:16:15 +02:00
Efraim Flashner
32f52f82b3
gnu: gcc: For riscv64-linux remove STARTFILE_PREFIX_SPEC. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: When building for
riscv64-linux and the 'gcc/configure/riscv' directory exists adjust the
STARTFILE_PREFIX_SPEC so it doesn't do anything.
 2022-03-16 12:09:42 +02:00
kiasoc5
53370c7b03
gnu: httpie: Update to 3.1.0 [security fixes]. 
Fixes CVE-2022-24737 and CVE-2022-0430.

* gnu/packages/python-web.scm (httpie): Update to 3.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-15 20:01:33 -04:00
zimoun
8a0713aef2
gnu: Add r-diffcyt. 
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
 2022-03-15 22:55:37 +01:00
zimoun
69af58e9a1
gnu: Add r-ga. 
* gnu/packages/cran.scm (r-ga): New variable.
 2022-03-15 22:55:01 +01:00
zimoun
76f96c891c
gnu: Add r-carrier. 
* gnu/packages/cran.scm (r-carrier): New variable.
 2022-03-15 22:54:14 +01:00
zimoun
71ec67ef3f
gnu: Add r-babelwhale. 
* gnu/packages/cran.scm (r-babelwhale): New variable.
 2022-03-15 22:53:09 +01:00
zimoun
59978546fe
gnu: Add r-polychrome. 
* gnu/packages/cran.scm (r-polychrome): New variable.
 2022-03-15 22:52:37 +01:00
zimoun
fdbc472bd1
gnu: Add r-scannotatr. 
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
 2022-03-15 22:50:42 +01:00
Ricardo Wurmus
bec806e2fc
gnu: r-sn: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-sn): Update to 2.0.2.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
b3dbb32bb3
gnu: r-dt: Update to 0.21. 
* gnu/packages/statistics.scm (r-dt): Update to 0.21.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
b6a1cc89d4
gnu: r-simr: Update to 1.0.6. 
* gnu/packages/statistics.scm (r-simr): Update to 1.0.6.
[propagated-inputs]: Add r-lmertest.
[synopsis]: Change case and spelling.
[description]: Use complete sentences.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
6c30609f23
gnu: r-rmarkdown: Update to 2.13. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.13.
[propagated-inputs]: Add r-bslib.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
be72c056f6
gnu: r-withr: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
f077fa0fd0
gnu: r-openssl: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
2af90fa53e
gnu: r-commonmark: Update to 1.8.0. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.8.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
46a1b44782
gnu: r-desc: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-desc): Update to 1.4.1.
[propagated-inputs]: Remove r-crayon; add r-cli.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
f2386cafcf
gnu: r-bbmisc: Update to 1.12. 
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.12.
[propagated-inputs]: Add r-data-table.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
4bc8d24e16
gnu: r-locfit: Update to 1.5-9.5. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.5.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
b0e3061665
gnu: r-rlang: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.2.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
4f9f37cfa9
gnu: r-survival: Update to 3.3-1. 
* gnu/packages/statistics.scm (r-survival): Update to 3.3-1.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
7751e96df2
gnu: r-bien: Update to 1.2.5. 
* gnu/packages/cran.scm (r-bien): Update to 1.2.5.
[native-inputs]: Remove r-testthat.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
d66b958b6d
gnu: r-filehash: Update to 2.4-3. 
* gnu/packages/cran.scm (r-filehash): Update to 2.4-3.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
88716a4694
gnu: r-pdftools: Update to 3.1.1. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.1.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
aaec4f36a8
gnu: r-mlr3tuning: Update to 0.12.1. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.12.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
4ad704ee05
gnu: r-bbotk: Update to 0.5.1. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.5.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
c01ae306ad
gnu: r-mlr3: Update to 0.13.3. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.13.3.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
e14b368dfe
gnu: r-parsnip: Update to 0.2.0. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.2.0.
[propagated-inputs]: Add r-cli, r-ggplot2, and r-withr.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
f4e5ed1120
gnu: r-posterior: Update to 1.2.1. 
* gnu/packages/cran.scm (r-posterior): Update to 1.2.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
bb98e8bbf6
gnu: r-latex2exp: Update to 0.9.4. 
* gnu/packages/cran.scm (r-latex2exp): Update to 0.9.4.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
5fc38f7ab6
gnu: r-shinystan: Update to 2.6.0. 
* gnu/packages/cran.scm (r-shinystan): Update to 2.6.0.
[propagated-inputs]: Remove r-rsconnect.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
682d4a4b64
gnu: r-semplot: Update to 1.1.5. 
* gnu/packages/cran.scm (r-semplot): Update to 1.1.5.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
3a7e5bb521
gnu: r-qgraph: Update to 1.9.2. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.2.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
5b992f4b42
gnu: r-openmx: Update to 2.20.6. 
* gnu/packages/cran.scm (r-openmx): Update to 2.20.6.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
1e2b297a56
gnu: r-sem: Update to 3.1-14. 
* gnu/packages/cran.scm (r-sem): Update to 3.1-14.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
183581903e
gnu: r-quanteda: Update to 3.2.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 3.2.1.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
37d4f83a2c
gnu: r-torch: Update to 0.7.2. 
* gnu/packages/cran.scm (r-torch): Update to 0.7.2.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
e8104d1d63
gnu: r-caret: Update to 6.0-91. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-91.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
e910b87515
gnu: r-imager: Update to 0.42.13. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.13.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
2cc2e440dc
gnu: r-seewave: Update to 2.2.0. 
* gnu/packages/cran.scm (r-seewave): Update to 2.2.0.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
0d76859355
gnu: r-sysfonts: Update to 0.8.8. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.8.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
13bb00192c
gnu: r-bio3d: Update to 2.4-3. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-3.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
f4f1a353ae
gnu: r-pracma: Update to 2.3.8. 
* gnu/packages/cran.scm (r-pracma): Update to 2.3.8.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
84e5b9fac2
gnu: r-parameters: Update to 0.17.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.17.0.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
766f8ea02c
gnu: r-styler: Update to 1.7.0. 
* gnu/packages/cran.scm (r-styler): Update to 1.7.0.
[propagated-inputs]: Remove r-backports, r-glue, and r-xfun.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
c0d132d4d1
gnu: r-mcmcpack: Update to 1.6-1. 
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.6-1.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
03800a95b0
gnu: r-float: Update to 0.2-6.1. 
* gnu/packages/cran.scm (r-float): Update to 0.2-6.1.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
15970c6e21
gnu: r-sf: Update to 1.0-7. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-7.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
4a3b7e497b
gnu: r-udunits2: Update to 0.13.2.1. 
* gnu/packages/cran.scm (r-udunits2): Update to 0.13.2.1.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
4e8e54a47f
gnu: r-gamlss-dist: Update to 6.0-3. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 6.0-3.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
507123b893
gnu: r-densityclust: Update to 0.3.2. 
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.2.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
b1d358e742
gnu: r-tidytree: Update to 0.3.9. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.9.
[propagated-inputs]: Add r-pillar.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
edbe5a7c31
gnu: r-admisc: Update to 0.25. 
* gnu/packages/cran.scm (r-admisc): Update to 0.25.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
464580c907
gnu: r-fmsb: Update to 0.7.3. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.3.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
f180f43645
gnu: r-circular: Update to 0.4-94. 
* gnu/packages/cran.scm (r-circular): Update to 0.4-94.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
51cb6e9a4e
gnu: r-rcppgsl: Update to 0.3.11. 
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.11.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
e796678766
gnu: r-glmmtmb: Update to 1.1.3. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.3.
[native-inputs]: Add r-rmarkdown.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
aa9a3a69e0
gnu: r-tmb: Update to 1.8.0. 
* gnu/packages/cran.scm (r-tmb): Update to 1.8.0.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
d147bf7a1f
gnu: r-bayesplot: Update to 1.9.0. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.9.0.
[propagated-inputs]: Add r-posterior.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
6515fff157
gnu: r-gam: Update to 1.20.1. 
* gnu/packages/cran.scm (r-gam): Update to 1.20.1.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
56ba9331df
gnu: r-precrec: Update to 0.12.9. 
* gnu/packages/cran.scm (r-precrec): Update to 0.12.9.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
95350fb1d7
gnu: r-flextable: Update to 0.7.0. 
* gnu/packages/cran.scm (r-flextable): Update to 0.7.0.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
4199e47865
gnu: r-renv: Update to 0.15.4. 
* gnu/packages/cran.scm (r-renv): Update to 0.15.4.
 2022-03-15 22:14:41 +01:00
Ricardo Wurmus
d0321cd18f
gnu: r-maptools: Update to 1.1-3. 
* gnu/packages/cran.scm (r-maptools): Update to 1.1-3.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
8fae1d0c9b
gnu: r-xfun: Update to 0.30. 
* gnu/packages/cran.scm (r-xfun): Update to 0.30.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
145f5db8ba
gnu: r-seriation: Update to 1.3.3. 
* gnu/packages/cran.scm (r-seriation): Update to 1.3.3.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
b4ce58746e
gnu: r-ddalpha: Update to 1.3.12. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.12.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
9995771129
gnu: r-linprog: Update to 0.9-4. 
* gnu/packages/cran.scm (r-linprog): Update to 0.9-4.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
8c9f00644c
gnu: r-dimred: Update to 0.2.5. 
* gnu/packages/cran.scm (r-dimred): Update to 0.2.5.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
3c8dd4448a
gnu: r-fitdistrplus: Update to 1.1-8. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-8.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
96554a0d47
gnu: r-rcppthread: Update to 2.1.2. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.2.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
8fb8b40c05
gnu: r-rcpp: Update to 1.0.8.2. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.8.2.
 2022-03-15 22:14:40 +01:00
Ricardo Wurmus
013395f942
gnu: r-ape: Update to 5.6-2. 
* gnu/packages/cran.scm (r-ape): Update to 5.6-2.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
d0000637c5
gnu: r-rticles: Update to 0.23. 
* gnu/packages/cran.scm (r-rticles): Update to 0.23.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
9cd04ea305
gnu: r-emdist: Update to 0.3-2. 
* gnu/packages/cran.scm (r-emdist): Update to 0.3-2.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
f9172cf611
gnu: r-datawizard: Update to 0.3.0. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.3.0.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
e378e7a855
gnu: liblantern: Update to 0.7.2. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2.
 2022-03-15 22:14:39 +01:00
Efraim Flashner
652b26d489
gnu: ncdu2: Update to 2.1. 
* gnu/packages/ncdu.scm (ncdu2): Update to 2.1.
 2022-03-15 22:29:11 +02:00
Efraim Flashner
bb9b3645e8
gnu: mariadb: Fix building for powerpc-linux. 
* gnu/packages/databases.scm (mariadb)[arguments]: Add custom phase for
powerpc-linux to apply patch.
[native-inputs]: When building for powerpc-linux add patch and a patch
file.
* gnu/packages/patches/mariadb-link-libatomic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-03-15 22:20:15 +02:00
jgart
32cf6a8e87
gnu: zig: Update to 0.9.1. 
* gnu/packages/zig.scm (zig): Update to 0.9.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-15 21:55:46 +02:00
Ricardo Wurmus
231841f9b9
gnu: r-afex: Add vignette builder. 
* gnu/packages/cran.scm (r-afex)[native-inputs]: Add r-r-rsp.
[arguments]: Add build phase to set HOME variable.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
5b325ab18d
gnu: r-lme4: Update to 1.1-28. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-28.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
1ba0dd9cac
gnu: r-quantreg: Update to 5.88. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.88.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
7ba037dc10
gnu: r-vgam: Update to 1.1-6. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-6.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
21abb27570
gnu: r-robust: Update to 0.7-0. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-0.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
ce8de14973
gnu: r-rrcov: Update to 1.6-2. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-2.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
77e7a09080
gnu: r-randomforest: Update to 4.7-1. 
* gnu/packages/statistics.scm (r-randomforest): Update to 4.7-1.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
140be554d1
gnu: r-tidyr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.2.0.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
ca1bb35c50
gnu: r-tidyselect: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.1.2.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
93e5add9e2
gnu: r-domc: Update to 1.3.8. 
* gnu/packages/statistics.scm (r-domc): Update to 1.3.8.
 2022-03-15 20:18:54 +01:00
Ricardo Wurmus
ba2ccdf7b4
gnu: r-doparallel: Update to 1.0.17. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.17.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
187bd9d74f
gnu: r-foreach: Update to 1.5.2. 
* gnu/packages/statistics.scm (r-foreach): Update to 1.5.2.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
1141bcde2d
gnu: r-iterators: Update to 1.0.14. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.14.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
41ff5abb5c
gnu: r-xml: Update to 3.99-0.9. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.9.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
0e407e53df
gnu: r-rsqlite: Update to 2.2.10. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.10.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
308c2841bf
gnu: r-brew: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-brew): Update to 1.0-7.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
fdfbc3926b
gnu: r-dplyr: Update to 1.0.8. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.8.
[propagated-inputs]: Remove r-ellipsis.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
82661cdbb3
gnu: r-rlang: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.1.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
e7058ed633
gnu: r-crayon: Update to 1.5.0. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.5.0.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
cdf77791f1
gnu: r-yaml: Update to 2.3.5. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.3.5.
 2022-03-15 20:18:53 +01:00
Ricardo Wurmus
30567b23b5
gnu: r-evaluate: Update to 0.15. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.15.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
f7304f0afb
gnu: r-svglite: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 2.1.0.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
59212ce38a
gnu: r-gdtools: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.4.
[inputs]: Add fontconfig.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
1f2816a3b1
gnu: r-ggdendro: Update to 0.1.23. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.23.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
5ca2a180c8
gnu: r-mgcv: Update to 1.8-39. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-39.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
7f648ff20b
gnu: r-mockery: Update to 0.4.3. 
* gnu/packages/cran.scm (r-mockery): Update to 0.4.3.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
b7ea496740
gnu: r-paws-common: Update to 0.3.16. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.16.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
bb7d87784d
gnu: r-keras: Update to 2.8.0. 
* gnu/packages/cran.scm (r-keras): Update to 2.8.0.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
da46ff71d0
gnu: r-tensorflow: Update to 2.8.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.8.0.
 2022-03-15 20:18:52 +01:00
Ricardo Wurmus
0c854abb2f
gnu: r-qs: Update to 0.25.3. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.3.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
51eafee209
gnu: r-opencpu: Update to 2.2.7. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.7.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
070504923b
gnu: r-pdftools: Update to 3.1.0. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.1.0.
[description]: Use complete sentences.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
6e53ce2672
gnu: r-ragg: Update to 1.2.2. 
* gnu/packages/cran.scm (r-ragg): Update to 1.2.2.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
b1fae9a855
gnu: r-mlr3tuning: Update to 0.12.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.12.0.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
74bf3b55dc
gnu: r-mlr3: Update to 0.13.2. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.13.2.
[propagated-inputs]: Add r-evaluate.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
ece2ba8c57
gnu: r-scattermore: Update to 0.8. 
* gnu/packages/cran.scm (r-scattermore): Update to 0.8.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
4b7368f12f
gnu: r-seqminer: Update to 8.4. 
* gnu/packages/cran.scm (r-seqminer): Update to 8.4.
 2022-03-15 20:18:51 +01:00
Ricardo Wurmus
e202b04e80
gnu: r-dials: Update to 0.1.0. 
* gnu/packages/cran.scm (r-dials): Update to 0.1.0.
[propagated-inputs]: Add r-hardhat and r-lifecycle.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
f74a6e8096
gnu: r-rfast: Update to 2.0.6. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.6.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
026aa0aec0
gnu: r-spatstat: Update to 2.3-3. 
* gnu/packages/cran.scm (r-spatstat): Update to 2.3-3.
[propagated-inputs]: Add r-spatstat-random.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
2bb7c7095c
gnu: r-spatstat-linnet: Update to 2.3-2. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-2.
[propagated-inputs]: Add r-spatstat-random.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
b85b8aefdd
gnu: r-spatstat-core: Update to 2.4-0. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.4-0.
[propagated-inputs]: Add r-spatstat-random.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
1cbcb03a0e
gnu: r-spatstat-geom: Update to 2.3-2. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.3-2.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
15d3374553
gnu: r-conquer: Update to 1.2.2. 
* gnu/packages/cran.scm (r-conquer): Update to 1.2.2.
[propagated-inputs]: Remove r-caret.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
734c6d3c48
gnu: r-latex2exp: Update to 0.9.3. 
* gnu/packages/cran.scm (r-latex2exp): Update to 0.9.3.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
a6bccab948
gnu: r-semplot: Update to 1.1.4. 
* gnu/packages/cran.scm (r-semplot): Update to 1.1.4.
[propagated-inputs]: Remove r-regsem.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
5612ebe051
gnu: r-qgraph: Update to 1.9.1. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.1.
 2022-03-15 20:18:50 +01:00
Ricardo Wurmus
6f6287f6c4
gnu: r-rockchalk: Update to 1.8.151. 
* gnu/packages/cran.scm (r-rockchalk): Update to 1.8.151.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
d82069628b
gnu: r-openmx: Update to 2.20.3. 
* gnu/packages/cran.scm (r-openmx): Update to 2.20.3.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
b4b3e113ff
gnu: r-ltm: Update to 1.2-0. 
* gnu/packages/cran.scm (r-ltm): Update to 1.2-0.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
02772c9ed4
gnu: r-rsvg: Update to 2.2.0. 
* gnu/packages/cran.scm (r-rsvg): Update to 2.2.0.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
3fafc8e8f3
gnu: r-gamlss: Update to 5.4-1. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.4-1.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
027a1de102
gnu: r-lhs: Update to 1.1.4. 
* gnu/packages/cran.scm (r-lhs): Update to 1.1.4.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
5554412bad
gnu: r-showtext: Update to 0.9-5. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-5.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
fcba8e0cff
gnu: r-terra: Update to 1.5-21. 
* gnu/packages/cran.scm (r-terra): Update to 1.5-21.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
01af4c2a81
gnu: r-systemfonts: Update to 1.0.4. 
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.4.
[inputs]: Add freetype.
 2022-03-15 20:18:49 +01:00
Ricardo Wurmus
00bd4e82b2
gnu: r-xgboost: Update to 1.5.2.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.5.2.1.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
948eb6625f
gnu: r-dalex: Update to 2.4.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.4.0.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
4fa92d643c
gnu: r-arrow: Update to 7.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 7.0.0.
[propagated-inputs]: Add r-cpp11.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
962cefe18a
gnu: r-ggnewscale: Update to 0.4.6. 
* gnu/packages/cran.scm (r-ggnewscale): Update to 0.4.6.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
050c58be9d
gnu: r-rttf2pt1: Update to 1.3.10. 
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.10.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
0070e1ee25
gnu: r-sf: Update to 1.0-6. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-6.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
734e44b6aa
gnu: r-units: Update to 0.8-0. 
* gnu/packages/cran.scm (r-units): Update to 0.8-0.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
e3db5d94c3
gnu: r-brobdingnag: Update to 1.2-7. 
* gnu/packages/cran.scm (r-brobdingnag): Update to 1.2-7.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
3b46b0260b
gnu: r-sets: Update to 1.0-21. 
* gnu/packages/cran.scm (r-sets): Update to 1.0-21.
 2022-03-15 20:18:48 +01:00
Ricardo Wurmus
fad6b50da6
gnu: r-pbdzmq: Update to 0.3-7. 
* gnu/packages/cran.scm (r-pbdzmq): Update to 0.3-7.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
dec50763fd
gnu: r-future: Update to 1.24.0. 
* gnu/packages/cran.scm (r-future): Update to 1.24.0.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
fab51f88f5
gnu: r-gmp: Update to 0.6-4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.6-4.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
91152a97be
gnu: r-rnifti: Update to 1.4.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.4.0.
[inputs]: Add zlib.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
27a453cdc0
gnu: r-rnexml: Update to 2.4.6. 
* gnu/packages/cran.scm (r-rnexml): Update to 2.4.6.
[propagated-inputs]: Add r-rlang.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
6434420538
gnu: r-densityclust: Update to 0.3.1. 
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.1.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
f8924f7e51
gnu: r-speedglm: Update to 0.3-4. 
* gnu/packages/cran.scm (r-speedglm): Update to 0.3-4.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
2386d6f8b1
gnu: r-tidytree: Update to 0.3.8. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.8.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
89d0dac10c
gnu: r-admisc: Update to 0.24. 
* gnu/packages/cran.scm (r-admisc): Update to 0.24.
 2022-03-15 20:18:47 +01:00
Ricardo Wurmus
054e06f168
gnu: r-ks: Update to 1.13.4. 
* gnu/packages/cran.scm (r-ks): Update to 1.13.4.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
db9ddd20c3
gnu: r-chk: Update to 0.8.0. 
* gnu/packages/cran.scm (r-chk): Update to 0.8.0.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
8f6c93bec4
gnu: r-mvabund: Update to 4.2.1. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.2.1.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
710a8f93c2
gnu: r-gee: Update to 4.13-22. 
* gnu/packages/cran.scm (r-gee): Update to 4.13-22.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
31454078f9
gnu: r-abjutils: Update to 0.3.2. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.3.2.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
c191a90357
gnu: r-doby: Update to 4.6.12. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.12.
[propagated-inputs]: Remove r-curry.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
0121716497
gnu: r-insight: Update to 0.16.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.16.0.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
910e9b88a9
gnu: r-rdpack: Update to 2.1.4. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.4.
 2022-03-15 20:18:46 +01:00
Ricardo Wurmus
6e28b3beae
gnu: r-fst: Update to 0.9.8. 
* gnu/packages/cran.scm (r-fst): Update to 0.9.8.
[propagated-inputs]: Add r-fstcore.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
cd994f8497
gnu: r-dosnow: Update to 1.0.20. 
* gnu/packages/cran.scm (r-dosnow): Update to 1.0.20.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
8c0021fee2
gnu: r-parsedate: Update to 1.3.0. 
* gnu/packages/cran.scm (r-parsedate): Update to 1.3.0.
[propagated-inputs]: Remove r-rematch2.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
c68c5e4ff2
gnu: r-tinytex: Update to 0.37. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.37.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
6a18addb0f
gnu: r-pillar: Update to 1.7.0. 
* gnu/packages/cran.scm (r-pillar): Update to 1.7.0.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
9cc0253167
gnu: r-seriation: Update to 1.3.2. 
* gnu/packages/cran.scm (r-seriation): Update to 1.3.2.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
e085aee822
gnu: r-tsp: Update to 1.2-0. 
* gnu/packages/cran.scm (r-tsp): Update to 1.2-0.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
24fe3f379f
gnu: r-cli: Update to 3.2.0. 
* gnu/packages/cran.scm (r-cli): Update to 3.2.0.
 2022-03-15 20:18:45 +01:00
Ricardo Wurmus
1383dde1b2
gnu: r-jomo: Update to 2.7-3. 
* gnu/packages/cran.scm (r-jomo): Update to 2.7-3.
[propagated-inputs]: Add r-tibble.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
421e82ae88
gnu: r-recipes: Update to 0.2.0. 
* gnu/packages/cran.scm (r-recipes): Update to 0.2.0.
[propagated-inputs]: Add r-hardhat.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
4b2060cd5f
gnu: r-generics: Update to 0.1.2. 
* gnu/packages/cran.scm (r-generics): Update to 0.1.2.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
f0381eb5ce
gnu: r-gower: Update to 1.0.0. 
* gnu/packages/cran.scm (r-gower): Update to 1.0.0.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
9fe1ba50e9
gnu: r-magic: Update to 1.6-0. 
* gnu/packages/cran.scm (r-magic): Update to 1.6-0.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
7ed3d5d2bd
gnu: r-cvst: Update to 0.2-3. 
* gnu/packages/cran.scm (r-cvst): Update to 0.2-3.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
87981e94f7
gnu: r-circlize: Update to 0.4.14. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.14.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
a743923d23
gnu: r-rcppthread: Update to 2.0.2. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.0.2.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
79a8f31d8f
gnu: r-glue: Update to 1.6.2. 
* gnu/packages/cran.scm (r-glue): Update to 1.6.2.
 2022-03-15 20:18:44 +01:00
Ricardo Wurmus
77470c2a34
gnu: r-colorspace: Update to 2.0-3. 
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-3.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
86ad25e9ab
gnu: r-jsonlite: Update to 1.8.0. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.0.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
ba4a6487f6
gnu: r-ashr: Update to 2.2-54. 
* gnu/packages/cran.scm (r-ashr): Update to 2.2-54.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
17349440cb
gnu: r-clipr: Update to 0.8.0. 
* gnu/packages/cran.scm (r-clipr): Update to 0.8.0.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
09957aa2c7
gnu: r-v8: Update to 4.1.0. 
* gnu/packages/cran.scm (r-v8): Update to 4.1.0.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
4989e09cc0
gnu: Add r-fstcore. 
* gnu/packages/cran.scm (r-fstcore): New variable.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
70c8a412f6
gnu: Add r-spatstat-random. 
* gnu/packages/cran.scm (r-spatstat-random): New variable.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
0d5a01ab0f
gnu: r-torch: Update to 0.7.0. 
* gnu/packages/cran.scm (r-torch): Update to 0.7.0.
 2022-03-15 20:18:43 +01:00
Ricardo Wurmus
95f9c44362
gnu: liblantern: Update to 0.7.0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
d7636c8bb7
gnu: python-pytorch-for-r-torch: Reuse python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use
definition on python-pytorch, thereby updating to 1.10.2.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
6472ccf4db
gnu: r-leaflet: Update to 2.1.0. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.0.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
feb6bb28b4
gnu: apache-arrow: Update to 7.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 7.0.0.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
79607549e2
gnu: r-shinyjqui: Update to 0.4.1. 
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.1.
[source]: Delete minified JavaScript file.
[arguments]: Minify additional JavaScript file from source.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add jquery.ui.touch-punch.js.
 2022-03-15 20:18:38 +01:00
Mathieu Othacehe
2543cb4854
images: novena: Fix build. 
* gnu/system/images/novena.scm (novena-barebones-os)[kernel]: Use the
linux-libre-arm-generic kernel.
[initrd-modules]: Do not specify any modules as sdhci-esdhc-imx, ahci_imx and
i2c-dev are built-in in the arm-generic kernel.
 2022-03-15 13:14:29 +01:00
Vagrant Cascadian
af8d568f82
gnu: diffoscope: Update to 207. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 207.
 2022-03-14 16:06:05 -07:00
Brendan Tildesley
57fe92dded
gnu: crypto++: Update to 8.6.0. 
* gnu/packages/crypto.scm (crypto++): Update to 8.6.0.

Note: This release includes a fix for a bug where code using AVX2
instructions produced incorrect encrypted files:

https://github.com/weidai11/cryptopp/issues/1069
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-14 23:32:30 +01:00
Ludovic Courtès
15bb35d0c4
gnu: gcc@11: Inherit supported micro-architectures from gcc@10. 
Previously, gcc@11 would inherit the 'compiler-cpu-architectures'
property from gcc@8.

* gnu/packages/gcc.scm (gcc-11)[properties]: New field.
 2022-03-14 23:32:26 +01:00
Ludovic Courtès
e86293d250
gnu: ocaml-lacaml: Do not build with "-march=native". 
* gnu/packages/ocaml.scm (ocaml-lacaml)[origin]: Add 'snippet'.
[properties]: New field.
 2022-03-14 23:32:19 +01:00
Guillaume Le Vaillant
f8aa76ab1f
gnu: rtl-sdr: Fix udev rules. 
This is a followup to bcc13ee8a1.

* gnu/packages/radio.scm (rtl-sdr)[arguments]: Add 'fix-udev-rules' phase.
 2022-03-14 15:42:46 +01:00
Efraim Flashner
9ba64d70f1
gnu: gcompris-qt: Update to 2.3. 
* gnu/packages/education.scm (gcompris-qt): Update to 2.3.
 2022-03-14 16:05:03 +02:00
Guillaume Le Vaillant
bcc13ee8a1
gnu: rtl-sdr: Update to 0.6.0.1-5e73f90. 
* gnu/packages/radio.scm (rtl-sdr): Update to 0.6.0.1-5e73f90.
 2022-03-14 14:23:50 +01:00
Efraim Flashner
c0ca63b4da
gnu: coeurl: Add source file-name. 
* gnu/packages/curl.scm (coeurl)[source]: Add file-name field.
 2022-03-14 12:10:30 +02:00
Mathieu Othacehe
4ba35ccd18
gnu: isc-dhcp: Fix cross-compilation. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Move config to ...
[native-inputs]: ... here.
 2022-03-14 09:46:01 +01:00
Pradana AUMARS
857e5ab222
gnu: Add python-ansicolors. 
* gnu/packages/python-xyz.scm (python-ansicolors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-13 23:26:31 +01:00
Cees de Groot
fce9f13b54
gnu: elixir: Don't fix Git executable location during Elixir build. 
The removed code below affected two locations where Elixir uses Git:

* At build-time, Git is used to see if the build is inside a Git repo and if so, git info
  is added to the build information that Elixir returns with `System.build_info()`. The code
  uses PATH + `git` so the Git version from the inputs is used which is just fine.
* At run-time, Git is used by Mix if, and only if, there are any Git-based dependencies. This
  is not the normal case, and in that sense Git is an optional dependency of Elixir - most
  projects will work just fine without Git being present. Here, too, PATH + `git` is used
  so if there is a need on a user's system to use Git-based dependencies, the user can just
  add the package to the profile and things will just work.

I feel that leaving this alone is cleaner than trying to fix the dependency (if we want to
keep it, it needs to be in propagated-inputs in order to keep Git around; I stumbled upon
this building a project with Git dependencies after doing a `guix gc`. However, given that
using Git dependencies is the exception and I think that minimizing dependencies is nicer
I opted to just remove the substition completely).

* gnu/packages/elixir.scm (elixir)[arguments]: In 'replace-paths' phase,
remove substitutions of "git".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-13 23:13:46 +01:00
Julien Lepiller
7bdead3fce
gnu: maven: Update to 3.8.5. 
* gnu/packages/maven.scm (maven-pom): Update to 3.8.5.
(maven-model-builder)[arguments]: Build from the subdirectory to work
around a test issue.
(maven-3.0-model-builder)[arguments]: Fix accordingly.
 2022-03-13 22:42:19 +01:00
Julien Lepiller
6dbce7d815
gnu: Add maven-parent-pom-35. 
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-35): New variable.
 2022-03-13 22:41:54 +01:00
Julien Lepiller
ecd735f33d
gnu: Add apache-parent-pom-25. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-25): New
variable.
 2022-03-13 22:41:48 +01:00
Julien Lepiller
67a2f6d6d9
gnu: ocaml-ppx-tools: Update to 6.5. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools): Update to 6.5.
 2022-03-13 22:41:25 +01:00
Julien Lepiller
bd9eb9ef27
gnu: dune: Update to 3.0.3. 
* gnu/packages/ocaml.scm (dune): Update to 3.0.3.
(dune-configurator)[arguments]: Remove vendored dependencies.
(ocaml4.09-dune-configurator)[arguments]: Extend from dune-configurator.
 2022-03-13 22:41:20 +01:00
Jelle Licht
c49b410344
gnu: python-pgpy: Update dependencies. 
* gnu/packages/python-crypto.scm (python-pgpy)[native-inputs]: Move
python-cryptography, python-pyasn1, python-singledispatch, python-six from
here ...
[propagated-inputs]: ... to here.
 2022-03-13 18:09:22 +01:00
Ekaitz Zarraga
178ca9ef13
gnu: Add spike. 
* gnu/packages/virtualization.scm (spike): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-13 11:02:25 +02:00
jgart
f69727278b
gnu: cl-find-port: Update to 0.1-2.811727f and use git-version. 
* gnu/packages/lisp-xyz.scm (cl-find-port): Update to 0.1-2.811727f.
[version]: Use git-version.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-03-13 04:41:51 -04:00
jgart
1a36fb51a8
gnu: janet: Update to 1.20.0. 
* gnu/packages/lisp.scm (janet): Update to 1.20.0.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-03-13 03:25:50 -04:00
Leo Famulari
44cd0a4f37
gnu: linux-libre 4.9: Update to 4.9.306. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.306.
(linux-libre-4.9-pristine-source): Update hash.
 2022-03-12 17:40:10 -05:00
Leo Famulari
5960d07847
gnu: linux-libre 4.14: Update to 4.14.271. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.271.
(linux-libre-4.14-pristine-source): Update hash.
 2022-03-12 17:40:10 -05:00
Leo Famulari
1a5f9fe746
gnu: linux-libre 4.19: Update to 4.19.234. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.234.
(linux-libre-4.19-pristine-source): Update hash.
 2022-03-12 17:40:10 -05:00
Leo Famulari
7822c77930
gnu: linux-libre 5.4: Update to 5.4.184. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.184.
(linux-libre-5.4-pristine-source): Update hash.
 2022-03-12 17:40:09 -05:00
Leo Famulari
317752fedf
gnu: linux-libre 5.10: Update to 5.10.105. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.105.
(linux-libre-5.10-pristine-source): Update hash.
 2022-03-12 17:40:09 -05:00
Leo Famulari
d642f0b80e
gnu: linux-libre 5.15: Update to 5.15.28. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.28.
(linux-libre-5.15-pristine-source): Update hash.
 2022-03-12 17:40:09 -05:00
Leo Famulari
927a5edc38
gnu: linux-libre: Update to 5.16.14. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.14.
(linux-libre-5.16-pristine-source): Update hash.
 2022-03-12 17:39:55 -05:00
Nicolas Goaziou
504d15a593
gnu: denemo: Honor TESTS?. 
* gnu/packages/music.scm (denemo)[arguments]<#:phases>: Honor TESTS? keyword.
 2022-03-12 19:23:09 +01:00
Nicolas Goaziou
33331efc46
gnu: denemo: Improve package style. 
* gnu/packages/music.scm (denemo)[native-inputs]: Remove labels.
[arguments]: Use G-expressions.  Remove trailing #T from phases.
 2022-03-12 19:21:55 +01:00
Nicolas Goaziou
ab042de0f7
gnu: denemo: Update to 2.6.0. 
* gnu/packages/music.scm (denemo): Update to 2.6.0.
 2022-03-12 19:19:22 +01:00