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27630 Commits

Author SHA1 Message Date
pimi
4f9355c360
gnu: Add gffcompare. 
gnu/packages/bioinformatics.scm (gffcompare): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-29 14:13:49 -04:00
pimi
9e21f2170e
gnu: Add r-abcoptim. 
gnu/packages/cran.scm (r-abcoptim): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-29 14:13:46 -04:00
Danny Milosavljevic
15c56e8273
gnu: Add solaar. 
* gnu/packages/admin.scm (solaar): New variable.
 2018-08-29 17:18:30 +02:00
Danny Milosavljevic
ac94ccb9b4
gnu: Add python-pyudev. 
* gnu/packages/admin.scm (python-pyudev): New variable.
 2018-08-29 17:18:28 +02:00
Ricardo Wurmus
c7fe888b42
gnu: Add python-scanpy. 
* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus
22b770ce00
gnu: Add python-anndata. 
* gnu/packages/python.scm (python-anndata): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus
d8b8eb3ff5
gnu: Add python-numba. 
* gnu/packages/python.scm (python-numba): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus
8892cac329
gnu: Add python-llvmlite. 
* gnu/packages/llvm.scm (python-llvmlite): New variable.
 2018-08-29 17:06:13 +02:00
Marius Bakke
9e17757ff5
Revert "gnu: snappy: Optimise." 
This causes too many rebuilds for the master branch.

This reverts commit f96ed06805.
 2018-08-29 16:58:54 +02:00
Ricardo Wurmus
9587544b44
gnu: Add ghc 8.4.3. 
* gnu/packages/haskell.scm (ghc-8): Rename this...
(ghc-8.0): ...to this.
(ghc): Point at ghc-8.0.
(ghc-8): New variable for GHC 8.4.3.

Co-authored-by: Timothy Samplet <samplet@ngyro.com>
 2018-08-29 16:56:35 +02:00
Ricardo Wurmus
59b55def00
gnu: Add r-infotheo. 
* gnu/packages/cran.scm (r-infotheo): New variable.
 2018-08-29 13:11:17 +02:00
Tobias Geerinckx-Rice
acf18cb190
gnu: capstone: Use HTTPS home page. 
* gnu/packages/engineering.scm (capstone)[home-page]: Use HTTPS.
 2018-08-28 22:46:38 +02:00
Tobias Geerinckx-Rice
2c3d30ef51
gnu: r-plotrix: Update to 3.7-3. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-3.
 2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice
f882d7c7c5
gnu: python-apipkg: Update home page. 
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
 2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice
e29bb27d88
gnu: r-pracma: Update to 2.1.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
 2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice
7bbdd943e7
gnu: claws-mail: Update to 3.17.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.1.
 2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice
4fca5a44f6
gnu: libntlm: Update to 1.5. 
* gnu/packages/gsasl.scm (libntlm): Update to 1.5.
[source]: Use HTTPS.
 2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice
f96ed06805
gnu: snappy: Optimise. 
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-08-28 22:30:59 +02:00
Efraim Flashner
dc8675afa7
gnu: Add urlscan. 
* gnu/packages/mail.scm (urlscan): New variable.
 2018-08-28 22:48:32 +03:00
Efraim Flashner
967de7c5b0
gnu: Add ephoto. 
* gnu/packages/enlightenment.scm (ephoto): New variable.
 2018-08-28 22:45:55 +03:00
Vagrant Cascadian
84fbb4b223
gnu: electron-cash: Update to 3.3.1. 
* gnu/packages/finance.scm (electron-cash): Update to 3.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-28 15:30:13 -04:00
Leo Famulari
8a5a1eff42
gnu: dropbear: Fix CVE-2018-15599. 
* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (dropbear)[source]: Use it.
 2018-08-28 14:44:11 -04:00
Ludovic Courtès
1ae29e3f5a
gnu: dico: Update to 2.6. 
* gnu/packages/dico.scm (dico): Update to 2.6.
[inputs]: Switch to GUILE-2.2.
 2018-08-28 12:35:02 +02:00
Ison111
d2434b6966
gnu: Add SpaceFM. 
* gnu/packages/lxde.scm (spacefm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-28 12:35:02 +02:00
Alex Kost
40f7ebac66
gnu: Add emacs-build-farm. 
* gnu/packages/emacs.scm (emacs-build-farm): New variable.
 2018-08-28 12:23:52 +03:00
Alex Kost
8b1f8f64c8
gnu: openmw: Update to 0.44.0. 
* gnu/packages/game-development.scm (openmw): Update to 0.44.0.
 2018-08-28 12:23:52 +03:00
Marius Bakke
526ce41930
gnu: GRUB: Check for errors from efibootmgr. 
* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): New field.
 2018-08-28 01:19:28 +02:00
Marius Bakke
2987b2e0d2
gnu: seabios: Update source URI. 
* gnu/packages/firmware.scm (seabios)[source](uri): Download from seabios.org.
 2018-08-28 01:19:28 +02:00
Marius Bakke
eb87b634a7
gnu: slang: Update to 2.3.2. 
* gnu/packages/slang.scm (slang): Update to 2.3.2.
 2018-08-28 01:19:28 +02:00
Marius Bakke
3c3c3d1d92
gnu: emacs-async: Download using git. 
The MELPA tarball hash changed.  Prevent this problem in the future
by downloading a git checkout.

* gnu/packages/emacs.scm (emacs-async)[home-page]: Update to actual.
[source]: Use GIT-FETCH.
 2018-08-28 01:19:28 +02:00
Leo Famulari
0de33cb364
gnu: feh: Enable EXIF support. 
* gnu/packages/image-viewers.scm (feh)[arguments]: Enable EXIF support.
(inputs): Add libexif.
 2018-08-27 17:04:57 -04:00
Leo Famulari
f2d2dc70fc
gnu: libexif: Update home-page URL. 
* gnu/packages/photo.scm (libexif)[home-page]: Update URL.
 2018-08-27 17:04:57 -04:00
Leo Famulari
6635a3cc7f
gnu: python-pygit2: Update to 0.26.4. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-27 15:13:46 -04:00
Clément Lassieur
a30cbd5dfb
gnu: cuirass: Update to 8d40c49. 
* gnu/packages/ci.scm (cuirass): Update to 8d40c49.
 2018-08-27 16:12:56 +02:00
Pierre Neidhardt
4715f92ef0
Update email for Pierre Neidhardt. 
* .mailmap: Add name and email for Pierre Neidhardt.
* gnu/packages/c.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/disk.scm, gnu/packages/emacs.scm, gnu/packages/freedesktop.scm,
gnu/packages/golang.scm, gnu/packages/image.scm, gnu/packages/music.scm,
gnu/packages/networking.scm, gnu/packages/password-utils.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/textutils.scm, gnu/packages/video.scm, gnu/packages/xdisorg.scm:
Update email for Pierre Neidhardt.
 2018-08-27 14:46:26 +02:00
Rutger Helling
2aeee872a6
gnu: weston: Update to 5.0.0. 
* gnu/packages/freedesktop.scm (weston): Update to 5.0.0.
 2018-08-27 10:11:30 +02:00
Ludovic Courtès
1ca54999db
gnu: Add Lepton-EDA. 
* gnu/packages/engineering.scm (lepton-eda): New variable.
 2018-08-27 01:13:23 +02:00
Ludovic Courtès
69502b5eb4
gnu: Add guile-aa-tree. 
* gnu/packages/guile.scm (guile-aa-tree): New variable.
 2018-08-27 01:13:23 +02:00
Christopher Lemmer Webber
6948fa0875
gnu: emacs-racket-mode: Update to commit add0190. 
* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit add0190.
 2018-08-26 07:02:04 -04:00
Arun Isaac
2cad58ca6f
gnu: ghc-scientific: Update to 0.3.6.2. 
* gnu/packages/haskell.scm (ghc-scientific): Update to 0.3.6.2.
[inputs]: Move ghc-tasty ...
[native-inputs]: ... to here.
 2018-08-26 11:48:22 +05:30
Arun Isaac
7550f4b0ef
gnu: ghc-integer-logarithms: Update to 1.0.2.1. 
* gnu/packages/haskell.scm (ghc-integer-logarithms): Update to 1.0.2.1.
[inputs]: Move ghc-quickcheck, ghc-smallcheck, ghc-tasty, ghc-tasty-hunit,
ghc-tasty-quickcheck, ghc-tasty-smallcheck ...
[native-inputs]: ... to here.
[home-page]: Update URI.
 2018-08-26 11:37:25 +05:30
Arun Isaac
b625f3a5fb
gnu: ghc-smallcheck: Update to 1.1.5. 
* gnu/packages/haskell.scm (ghc-smallcheck): Update to 1.1.5.
 2018-08-26 11:33:48 +05:30
Arun Isaac
3c30054290
gnu: ghc-optparse-applicative: Update to 0.14.2.0. 
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.14.2.0.
[arguments]: Enable tests.
 2018-08-26 11:27:00 +05:30
Mark H Weaver
cfb15a5163
gnu: linux-libre: Update to 4.18.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.5.
(%linux-libre-hash): Update hash.
 2018-08-26 00:38:41 -04:00
Mark H Weaver
fabe2c7354
gnu: linux-libre@4.14: Update to 4.14.67. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.67.
(%linux-libre-4.14-hash): Update hash.
 2018-08-26 00:36:42 -04:00
Mark H Weaver
8d55adfa67
gnu: linux-libre@4.9: Update to 4.9.124. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.124.
 2018-08-26 00:36:11 -04:00
Mark H Weaver
032712f621
gnu: linux-libre@4.4: Update to 4.4.152. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.152.
 2018-08-26 00:35:30 -04:00
Ludovic Courtès
64daf2177f
gnu: emacs-recent-addresses: Switch to a branch that works with Helm. 
* gnu/packages/emacs.scm (emacs-recent-addresses)[source]: Change URL
and update to afbbfdc.
 2018-08-26 01:47:41 +02:00
Kyle Meyer
bff861ece5
gnu: Add emacs-git-annex. 
* gnu/packages/emacs.scm (emacs-git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-26 01:47:40 +02:00
Kyle Meyer
8a9e0b6ebf
gnu: emacs-recent-addresses: Add missing words to description. 
* gnu/packages/emacs.scm (emacs-recent-addresses)[description]: Add missing
words.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-26 01:47:40 +02:00
Kei Kebreau
7d01ee66d4
gnu: Add avogadro. 
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2018-08-25 17:05:30 -04:00
Marius Bakke
94e9d750a2
gnu: libx11: Replace with 1.6.6 [security fixes]. 
This fixes CVE-2018-14599, CVE-2018-14600, and CVE-2018-14598.

* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11-1.6.6): New public variable.
 2018-08-25 16:32:06 +02:00
宋文武
7789bf9531
gnu: dante: Disable preloading to make 'sockd' work. 
* gnu/packages/networking.scm (dante)[arguments]: Pass '--disable-preload'
to #:configure-flags.
 2018-08-25 16:40:21 +08:00
Leo Famulari
36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-24 17:04:58 -04:00
Ludovic Courtès
c1352b4bad
gnu: font-gnu-unifont: Update to 11.0.02. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.02.
[arguments]: Adjust code to install 'unifont.info.gz' in 'install'
phase.
 2018-08-24 17:54:10 +02:00
Ludovic Courtès
bf0bb925ea
gnu: gdb: Update to 8.1.1. 
* gnu/packages/gdb.scm (gdb): Update to 8.1.1.
 2018-08-24 17:50:52 +02:00
Ricardo Wurmus
079cdd9c15
gnu: Add find-circ. 
* gnu/packages/bioinformatics.scm (find-circ): New variable.
 2018-08-24 11:20:19 +02:00
Tobias Geerinckx-Rice
4a3cf8929f
gnu: r-catools: Update to 1.17.1.1. 
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.1.
 2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice
0e5d66abf6
gnu: keepassxc: Update to 2.3.4. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.4.
[arguments]: Remove obsolete ‘patch-sources’ phase.
 2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice
a7b14a1b39
gnu: capstone: Update to 3.0.5. 
* gnu/packages/engineering.scm (capstone): Update to 3.0.5.
[arguments]: Set cstool's LDFLAGS in the environment instead of
SUBSTITUTE*ing the Makefile.
 2018-08-24 03:04:56 +02:00
Tobias Geerinckx-Rice
77c027b98b
gnu: r-trimcluster: Update to 0.1-2.1. 
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-2.1.
 2018-08-24 02:30:43 +02:00
Tobias Geerinckx-Rice
6d83cd1f9a
gnu: r-synchronicity: Update to 1.3.5. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.5.
 2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice
6a9a50fd2f
gnu: guile-lib: Update to 0.2.6.1. 
* gnu/packages/guile.scm (guile-lib): Update to 0.2.6.1.
[source]: Remove obsolete snippet.
 2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice
a0a7e42500
gnu: tuxguitar: Update to 1.5.2. 
* gnu/packages/music.scm (tuxguitar): Update to 1.5.2.
[source]: Remove obsolete snippet.
 2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice
38146797e6
gnu: libgig: Update to 4.1.0. 
* gnu/packages/music.scm (libgig): Update to 4.1.0.
 2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice
f6181921e5
gnu: denemo: Use INVOKE. 
* gnu/packages/music.scm (denemo)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice
fbde7b08e5
gnu: ncmpc: Update to 0.29. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.29.
[build-system]: Switch to Meson.
[arguments]: Find ncurses.h.
[native-inputs]: Add gettext.
 2018-08-24 02:30:41 +02:00
Ludovic Courtès
0b4e5f7e5b
gnu: parallel: Update to 20180822. 
* gnu/packages/parallel.scm (parallel): Update to 20180822.
 2018-08-24 00:40:09 +02:00
Ludovic Courtès
444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm. 
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
 2018-08-24 00:36:04 +02:00
Tobias Geerinckx-Rice
d32da49c76
gnu: r-devtools: Update to 1.13.6. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.6.
 2018-08-23 23:11:52 +02:00
Tobias Geerinckx-Rice
c95f9f09a7
gnu: drumkv1: Update to 0.9.2. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.2.
 2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice
69b4d24871
gnu: synthv1: Update to 0.9.2. 
* gnu/packages/music.scm (synthv1): Update to 0.9.2.
 2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice
29618d6722
gnu: samplv1: Update to 0.9.2. 
* gnu/packages/music.scm (samplv1): Update to 0.9.2.
 2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice
2c59066f6a
gnu: padthv1: Update to 0.9.2. 
* gnu/packages/music.scm (padthv1): Update to 0.9.2.
 2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice
9459216aa1
gnu: Update home pages for the V1 synth family. 
* gnu/packages/music.scm (synthv1, drumkv1, samplv1, padthv1)
[home-page]: Update & use HTTPS.
 2018-08-23 23:01:55 +02:00
pimi
16b0e8da48
gnu: Add r-a3. 
gnu/packages/cran.scm (r-a3): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-23 16:26:40 -04:00
pimi
881cc61c1b
gnu: Add r-manipulatewidget. 
gnu/packages/cran.scm (r-manipulatewidget): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-23 16:26:40 -04:00
pimi
87b576aa8b
gnu: Add r-slam. 
gnu/packages/cran.scm (r-slam): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-23 16:26:40 -04:00
pimi
c994418b8c
gnu: Add r-abcanalysis. 
gnu/packages/cran.scm (r-abcanalysis): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-23 16:26:40 -04:00
pimi
67cf070239
gnu: Add r-miniui. 
gnu/packages/web.scm (r-miniui): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-23 16:26:40 -04:00
Tobias Geerinckx-Rice
694765e1d6
gnu: qjackctl: Update to 0.5.3. 
* gnu/packages/audio.scm (qjackctl): Update to 0.5.3.
 2018-08-23 17:16:42 +02:00
Tobias Geerinckx-Rice
97353dfb69
gnu: byobu: Update home page. 
* gnu/packages/screen.scm (byobu)[home-page]: Update & use HTTPS.
 2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice
9e29921162
gnu: byobu: Update to 5.127. 
* gnu/packages/screen.scm (byobu): Update to 5.127.
* gnu/packages/patches/byobu-writable-status.patch: Adjust context
accordingly.
 2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice
f868276b8a
gnu: wine-staging-patchset-data: Don't use unstable archive. 
* gnu/packages/wine.scm (wine-staging-patchset-data)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
[native-inputs]: Remove unzip.
[arguments]: Adjust and refactor accordingly.
 2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice
574e2ee8ea
gnu: yubico-piv-tool: Update to 1.6.1. 
* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.1.
 2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice
fa5511b6e9
gnu: r-car: Update to 3.0-1. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice
39bb1cc77a
gnu: r-digest: Update to 0.6.16. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice
ed61c44895
gnu: r-dplyr: Update to 0.7.6. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice
51dbad04c5
gnu: r-rcpp: Update to 0.12.18. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
 2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice
02489a6646
gnu: duplicity: Update to 0.7.18. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
 2018-08-23 17:16:39 +02:00
Arun Isaac
72816ebed2
gnu: darcs: Update to 2.14.1. 
* gnu/packages/version-control.scm (darcs): Update to 2.14.1.
[arguments]: Add patch-sh phase. Enable tests.
 2018-08-23 15:51:43 +05:30
Arun Isaac
d3c7e70858
gnu: ghc-zlib: Update to 0.6.2. 
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
 2018-08-23 14:43:48 +05:30
Arun Isaac
cdccdec1f2
gnu: ghc-quickcheck-instances: Update to 0.3.18. 
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18.
[arguments]: Allow building with newer base-compat.
 2018-08-23 14:37:57 +05:30
Arun Isaac
f797a0e987
gnu: ghc-graphviz: Update to 2999.20.0.2. 
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2.
[native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
 2018-08-23 13:21:23 +05:30
Arun Isaac
e173a95ffa
gnu: ghc-wl-pprint-text: Update to 1.2.0.0. 
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0.
[inputs]: Add ghc-base-compat.
 2018-08-23 13:21:23 +05:30
Arun Isaac
0fa2c552fc
gnu: ghc-base-compat: Update to 0.10.4. 
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
 2018-08-23 13:21:23 +05:30
Arun Isaac
a3ab433a14
gnu: ghc-fgl-arbitrary: Allow building with newer hspec. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer hspec.
 2018-08-23 13:00:53 +05:30
Arun Isaac
c4348ca72c
gnu: ghc-shelly: Update to 1.8.1. 
* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1.
[inputs]: Add ghc-hspec-contrib.
 2018-08-23 12:53:47 +05:30
Arun Isaac
66dbe158cf
gnu: ghc-sandi: Update to 0.4.2. 
* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
 2018-08-23 12:44:00 +05:30
Arun Isaac
b1a1600030
gnu: ghc-fgl: Update to 5.6.0.0. 
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0.
[arguments]: Allow building with newer hspec.
 2018-08-23 12:32:46 +05:30
Mark H Weaver
4e51d3e9ae
gnu: guile-redis: Remove duplicate 'home-page' field. 
* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
 2018-08-23 02:30:30 -04:00
Mark H Weaver
efe2e7506e
gnu: guile-gcrypt: Remove duplicate 'home-page' field. 
This is a followup to commit b0cb92b2d4.

* gnu/packages/gnupg.scm (guile-gcrypt): Remove duplicate 'home-page' field.
 2018-08-23 02:29:31 -04:00
Mark H Weaver
12dc04d0b4
gnu: linux-libre: Update to 4.18.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4.
(%linux-libre-hash): Update hash.
 2018-08-23 02:22:57 -04:00
Mark H Weaver
98dfe06e3e
gnu: linux-libre@4.14: Update to 4.14.66. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66.
(%linux-libre-4.14-hash): Update hash.
 2018-08-23 02:21:28 -04:00
Mark H Weaver
bb2efc0384
gnu: linux-libre@4.9: Update to 4.9.123. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
 2018-08-23 02:20:44 -04:00
Mark H Weaver
435722f72c
gnu: linux-libre@4.4: Update to 4.4.151. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
 2018-08-23 02:20:00 -04:00
Ludovic Courtès
b0cb92b2d4
gnu: Add guile-gcrypt. 
* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
 2018-08-23 00:44:55 +02:00
Leo Famulari
58927996d9
gnu: perl-dbd-mysql: Update to 4.046. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-22 15:40:08 -04:00
Paul Garlick
414f620fbb
gnu: python-pkgconfig: Enable tests. 
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:52 -04:00
Paul Garlick
5fab62527c
gnu: python-pkgconfig: Update to 1.3.1. 
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:49 -04:00
Leo Famulari
373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}. 
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
 2018-08-22 13:38:39 -04:00
Leo Famulari
eb88ccf711
gnu: soundtouch: Update to 2.0.0. 
* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
 2018-08-22 13:38:39 -04:00
Leo Famulari
180a8986e5
gnu: ImageMagick: Update to 6.9.10-10. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
 2018-08-22 03:25:47 -04:00
Leo Famulari
09efe9af2d
gnu: GraphicsMagick: Update to 1.3.30. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
 2018-08-22 03:25:46 -04:00
Tobias Geerinckx-Rice
dc695341f7
gnu: r-fpc: Update to 2.1-11.1. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
 2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice
7138c48e6e
gnu: r-survival: Update to 2.42-6. 
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
 2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice
311f06c94a
gnu: Add sqlcrush. 
* gnu/packages/databases.smc (sqlcrush): New public variable.
 2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice
9763102bd7
gnu: Add python-pymysql. 
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
 2018-08-22 00:03:43 +02:00
Raphaël Mélotte
f998453559
gnu: luakit: Fix crash on startup. 
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
  wrapping phase.

This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-08-21 23:27:09 +02:00
Ludovic Courtès
c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a. 
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
 2018-08-21 23:27:08 +02:00
Leo Famulari
6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473]. 
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2018-08-21 11:16:30 -04:00
Leo Famulari
2fbc38e33b
gnu: python-paramiko: Add some missing dependencies. 
* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
 2018-08-21 11:04:47 -04:00
Pierre Neidhardt
15e57838c6
gnu: asymptote: Use minimal texlive-union. 
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
 2018-08-21 16:32:22 +02:00
Pierre Neidhardt
756fc3e1ef
gnu: texlive-latex-base: Include support files. 
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
 2018-08-21 16:32:22 +02:00
Pierre Neidhardt
9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union. 
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
 2018-08-21 16:30:22 +02:00
Tobias Geerinckx-Rice
49dcfb5045
gnu: sl: Don't use unstable tarball. 
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice
20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice
db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
93f9e0d9e9
gnu: r-iterators: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
4370881631
gnu: r-foreign: Update to 0.8-71. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
6d863cdedd
gnu: r-openssl: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
 2018-08-21 03:25:42 +02:00
Tobias Geerinckx-Rice
4481004fa4
gnu: r-modeltools: Update to 0.2-22. 
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
 2018-08-21 03:25:41 +02:00
Tobias Geerinckx-Rice
8ecf3f7ea5
gnu: mysql: Update to 5.7.23. 
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice
7cbf06d8c2
gnu: mysql: Fix build. 
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice
725449bd7a
gnu: python-pyodbc: Update to 4.0.24. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
28635e5266
gnu: python-mysqlclient: Update to 1.3.13. 
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
9c112bee91
gnu: r-energy: Update to 1.7-5. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
8b0701d97a
gnu: r-tinytex: Update to 0.6. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
2045af8035
gnu: r-xfun: Update to 0.3. 
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
9b77f724c0
gnu: r-jomo: Update to 2.6-3. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
cd4abb6d4a
gnu: r-trend: Update to 1.1.1. 
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
dc98bbcad4
gnu: r-lava: Update to 1.6.3. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
632cefdac9
gnu: r-mitml: Update to 0.3-6. 
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
658e37b6e8
gnu: r-vgam: Update to 1.0-6. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Tobias Geerinckx-Rice
c85626bb0f
gnu: xpad: Update to 5.1.0. 
* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0. 
* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
bd0570f21d
gnu: emacs-f: Don't use unstable tarball. 
* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
cb4baa4da6
gnu: gimp: Report bugs to Guix. 
Upstream prints this when running ./configure. Take the hint.

  NOTE: if you plan on packaging GIMP for distribution, it is
        recommended to override the bug report URL with option:
          --with-bug-report-url=https://example.com/
        so that you can filter packaging bugs from core bugs before
        reporting upstream.

* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
0f83d6029e
gnu: gimp: Update to 2.10.6. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
901888a854
gnu: gegl: Update to 0.4.8. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
3cae7f582e
gnu: babl: Update to 0.1.56. 
* gnu/packages/gimp.scm (babl): Update to 0.1.56.
 2018-08-20 16:35:54 +02:00
Ludovic Courtès
64bcc76c00
gnu: guile-ssh: Update to 0.11.3. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès
0ec3800274
gnu: guile-json: Update to 1.1.1. 
* gnu/packages/guile.scm (guile-json): Update to 1.1.1.
[source]: Remove snippet.
[native-inputs]: Add PKG-CONFIG.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès
a50eed201b
gnu: guile-redis: Update to 1.0.0. 
* gnu/packages/guile.scm (guile-redis): Update to 1.0.0.
[source]: Fetch from github.com.  Remove snippet.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and PKG-CONFIG.
 2018-08-20 16:32:17 +02:00
Roel Janssen
e63da346cf
gnu: Update virtuoso-ose to 7.2.5. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
 2018-08-20 16:13:45 +02:00
Rutger Helling
f307a9eca5
gnu: xpra: Update to 2.3.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.3.3.
 2018-08-20 08:48:53 +02:00
Rutger Helling
346c146f7f
gnu: wine-staging: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Rutger Helling
56d4b2163a
gnu: wine-staging-patchset-data: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Leo Famulari
1feaca62d3
gnu: syncthing: Invoke build steps with INVOKE. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Use INVOKE.
 2018-08-19 17:50:48 -04:00
Marius Bakke
146c3b2160
gnu: libconfuse: Update to 3.2.2 [fixes CVE-2018-14447]. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.2.
 2018-08-19 18:40:30 +02:00
Ludovic Courtès
0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue. 
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès
6d1a7ce8ea
gnu: libchop: Fix build and test errors. 
* gnu/packages/backup.scm (libchop)[arguments]: New field.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès
c9f898cd31
gnu: libchop: Require gperf 3.0. 
Fixes <https://bugs.gnu.org/32382>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/backup.scm (libchop)[native-inputs]: Use GPERF-3.0
instead of GPERF.
 2018-08-19 18:21:24 +02:00
Marius Bakke
a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Jan Nieuwenhuizen
8a502c3b60
gnu: mescc-tools: Update to 0.5.2. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.5.2.
 2018-08-19 13:30:57 +02:00
Mark H Weaver
860c37b9f2
gnu: linux-libre: Update to 4.18.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.3.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): Rename to ...
(%linux-libre-4.18-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Apply %linux-libre-4.18-patches.
 2018-08-19 02:19:20 -04:00
Mark H Weaver
08e43eba4e
gnu: linux-libre@4.14: Update to 4.14.65. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.65.
(%linux-libre-4.14-hash): Update hash.
 2018-08-19 02:16:53 -04:00
Mark H Weaver
ad6baf9dc1
gnu: linux-libre@4.9: Update to 4.9.122. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.122.
 2018-08-19 02:16:08 -04:00
Mark H Weaver
1ae8efa57d
gnu: linux-libre@4.4: Update to 4.4.150. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.150.
 2018-08-19 02:15:30 -04:00
Mark H Weaver
4ecd049074
Revert "gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3." 
This reverts commit 50dbd26ce0.
 2018-08-19 02:13:49 -04:00
Kei Kebreau
b13ba3f1ba
gnu: gnuplot: Update to 5.2.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
 2018-08-18 21:21:52 -04:00
Kei Kebreau
e1ecaa836f
gnu: xtensor: Update to 0.17.1. 
* gnu/packages/algebra.scm (xtensor): Update to 0.17.1.
[source]: Use git-fetch.
 2018-08-18 19:48:24 -04:00
Kei Kebreau
0bb41aec99
gnu: xtl: Update to 0.4.14. 
* gnu/packages/cpp.scm (xtl): Update to 0.4.14.
[source]: Use git-fetch.
 2018-08-18 19:48:18 -04:00
Mark H Weaver
50dbd26ce0
gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3. 
This adds the sole fix included in upstream versions 4.18.3, 4.14.65,
4.9.122, and 4.4.150.

* gnu/packages/linux.scm
(%linux-libre-exempt-zeroed-PTEs-from-inversion-patch): New variable.
(%linux-libre-patches): Repurposed for patches applicable to all versions.
Add the aforementioned fix.
(%linux-libre-4.18-patches): New variable, with definition based on the
previous %linux-libre-patches.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Add %linux-libre-4.18-patches.
(linux-libre-4.14, linux-libre-arm-generic-4.14)
(linux-libre-arm-omap2plus-4.14, linux-libre-4.9)
(linux-libre-4.4): Add %linux-libre-patches.
 2018-08-18 15:40:02 -04:00
Mark H Weaver
863e61994c
gnu: linux-libre: Update to 4.18.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.2.
(%linux-libre-hash): Update hash.
 2018-08-18 15:39:59 -04:00
Mark H Weaver
b8b2247803
gnu: linux-libre@4.14: Update to 4.14.64. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.64.
(%linux-libre-4.14-hash): Update hash.
 2018-08-18 15:39:57 -04:00
Mark H Weaver
32f4859399
gnu: linux-libre@4.9: Update to 4.9.121. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.121.
 2018-08-18 15:39:55 -04:00
Mark H Weaver
f36f5170b2
gnu: linux-libre@4.4: Update to 4.4.149. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.149.
 2018-08-18 15:39:48 -04:00
Tobias Geerinckx-Rice
8e950ee99c
gnu: sudo: Update to 1.8.24. 
* gnu/packages/admin.scm (sudo): Update to 1.8.24.
 2018-08-18 21:18:21 +02:00
Kei Kebreau
f35c3bbb68
gnu: singular: Update to 4.1.1p3. 
* gnu/packages/algebra.scm (singular): Update to 4.1.1p3.
 2018-08-18 12:04:54 -04:00
Kei Kebreau
7fe491fbc8
gnu: cddlib: Update to 0.94i. 
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
 2018-08-18 12:04:54 -04:00
Tobias Geerinckx-Rice
8cd80a4b61
gnu: eigen: Update to 3.3.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.3.5.
[source]: Remove upstreamed ARM patch and obsolete substitutions.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-18 16:40:31 +02:00
Tobias Geerinckx-Rice
fbe9c80fb7
gnu: eigen: Throw exceptions on test failure. 
* gnu/packages/algebra.scm (eigen)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-08-18 16:19:58 +02:00
Tobias Geerinckx-Rice
1b00e3bd2d
gnu: knot: Update to 2.7.1. 
* gnu/packages/dns.scm (knot): Update to 2.7.1.
[inputs]: Remove nettle, python-2, and python2-lmdb.
[arguments]: Remove ‘wrap-python-scripts’ phase for removed migration
scripts. Remove obsolete modules from, and add dnstap support for the
command-line tools to, #:configure-flags.
 2018-08-18 16:07:00 +02:00
Tobias Geerinckx-Rice
ee1362fc07
gnu: knot: Deduplicate documentation directories. 
* gnu/packages/dns.scm (knot)[arguments]: Install documentation to the
correct versioned subdirectory, as already done by the build system.
 2018-08-18 16:07:00 +02:00
Marius Bakke
7d4d7992aa
gnu: libmbim: Update to 1.16.2. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.16.2.
 2018-08-18 15:22:25 +02:00
Marius Bakke
90b3e136b8
gnu: xscreensaver: Update to 5.40. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.40.
 2018-08-18 15:20:41 +02:00
Marius Bakke
445704c228
gnu: webkitgtk: Update to 2.20.5. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.5.
 2018-08-18 15:16:51 +02:00
Marius Bakke
ddf1ace064
gnu: Add varnish-modules. 
* gnu/packages/web.scm (varnish-modules): New public variable.
 2018-08-18 15:12:36 +02:00
Marius Bakke
da682825df
gnu: Add varnish. 
* gnu/packages/web.scm (varnish): New variable.
 2018-08-18 15:12:36 +02:00
Tobias Geerinckx-Rice
567f02353a
gnu: mpd: Update to 0.20.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.21.
 2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice
68a234c1b8
gnu: perl-module-scandeps: Update to 1.25. 
* gnu/packages/perl.scm (perl-module-scandeps): Update to 1.25.
 2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice
4b6a0dfc2b
gnu: r-processx: Update to 3.2.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.2.0.
[propagated-inputs]: Add r-ps.
 2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice
b55e64d49f
gnu: Add r-ps. 
* gnu/packages/cran.scm (r-ps): New public variable.
 2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice
822fcaf8d8
gnu: r-mclust: Update to 5.4.1. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.1.
 2018-08-18 13:43:19 +02:00
Tobias Geerinckx-Rice
72d0585224
gnu: r-lme4: Update to 1.1-18-1. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-18-1.
 2018-08-18 13:43:18 +02:00
Leo Famulari
399c5fafcd
gnu: gst-plugins-base: Don't build with Opus for 32-bit systems. 
Fixes <https://bugs.gnu.org/32360> and <https://bugs.gnu.org/32466>.

* gnu/packages/gstreamer.scm (gst-plugins-base)[inputs]: Exclude opus
when building for 32-bit systems.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-08-18 13:27:41 +02:00
Tobias Geerinckx-Rice
72e782b2b5
gnu: strace: Disable parallel tests. 
Tests fail in undeterministic fashion when run in parallel on phat rigs.

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=32459>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/linux.scm (strace)[arguments]: Disable #:parallel-tests?.
 2018-08-18 13:17:11 +02:00
Mark H Weaver
3004f1c69b
gnu: linux-libre: Update to 4.18.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.1.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): New variable.
(linux-libre): Add %linux-libre-patches.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
 2018-08-18 06:19:31 -04:00
Rutger Helling
b83a40906e
gnu: c-toxcore: Update to 0.2.6. 
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.6.
 2018-08-18 12:21:52 +02:00
Arun Isaac
2913a94237
gnu: Add dante. 
* gnu/packages/networking.scm (dante): New variable.
 2018-08-18 00:50:37 +05:30
Tobias Geerinckx-Rice
a9088fc83e
gnu: emacs-git-modes: Update to 1.2.8. 
* gnu/packages/emacs.scm (git-modes): Update to 1.2.8.
 2018-08-17 17:51:15 +02:00
Kei Kebreau
b66741edc9
gnu: octave: Update to 4.4.1. 
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 10:47:52 -04:00
Christopher Baines
b98eace814
gnu: lollypop: Update to 0.9.521. 
* gnu/packages/gnome.scm (lollypop)[version]: Update to 0.9.521.
[source]: Change the URL, as the project has moved on gitlab.gnome.org. Update
the uri and sha256.
[home-page]: Change to wiki.gnome.org as the previous URL 404's.
 2018-08-17 12:21:48 +01:00
Tobias Geerinckx-Rice
dcf16c12cf
gnu: r-lang: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-lang): Update to 0.2.2.
 2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice
ef51e4e2b6
gnu: claws-mail: Update to 3.17.0. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.0.
 2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice
ba5c926c18
gnu: claws-mail: Use HTTPS. 
* gnu/packages/mail.scm (claws-mail)[source, home-page]: Use HTTPS.
 2018-08-17 13:13:10 +02:00
Tobias Geerinckx-Rice
24d6cc1d59
gnu: Use HTTPS for gtk.org. 
* gnu/packages/gimp.scm (babl)[source]: Use HTTPS for ftp.gtk.org.
* gnu/packages/gnome.scm (rest)[home-page]: Use HTTPS for www.gtk.org.
* gnu/packages/gtk.scm (gtk+-2, gtk-doc)[home-page]: Likewise.
 2018-08-17 13:13:10 +02:00
Oleg Pykhalov
773899112b
gnu: restic: Set a variable to disable FUSE tests. 
* gnu/packages/backup.scm (restic): Set a variable to disable FUSE tests.
 2018-08-17 11:05:01 +03:00
Tobias Geerinckx-Rice
c4f8953a12
gnu: lxc: Update to 3.0.2. 
* gnu/packages/virtualization.scm (lxc): Update to 3.0.2.
[source]: Remove patch.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 05:19:05 +02:00
Tobias Geerinckx-Rice
3ef4b30128
gnu: python-pyusb: Update to 1.0.2. 
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.2.
[source]: Update PyPI package name.
[home-page]: Update URI.
 2018-08-17 03:50:35 +02:00
Tobias Geerinckx-Rice
e2749d7576
gnu: ntp: Update to 4.2.8p12 [fix CVE-2018-12327]. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p12.
 2018-08-17 03:49:19 +02:00
Vagrant Cascadian
5d706f1898
gnu: dtc: Update to 1.4.7. 
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.7.
[native-inputs]: Add valgrind.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 18:47:58 -04:00
Tobias Geerinckx-Rice
f133e24481
gnu: armadillo: Update to 9.100.5. 
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
 2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice
eb668d5c2e
gnu: r-pkgconfig: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.2.
 2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice
22a01411ff
gnu: diffstat: Update to 1.62. 
* gnu/packages/version-control.scm (diffstat): Update to 1.62.
 2018-08-17 00:38:16 +02:00
Konrad Hinsen
e0b49c785b
gnu: racket: Update to 7.0. 
* gnu/packages/scheme.scm (racket): Update to 7.0.
[inputs]: Add libedit.
[arguments]: Update the list of FFI library references to patch.
[source]: Remove 'racket-fix-xform-issue.patch'.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust.
* gnu/packages/patches/racket-fix-xform-issue.patch: Delete file.
* gnu/local.mk: Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 18:36:09 -04:00
Clément Lassieur
41c038078e
gnu: cuirass: Update to 4db99f6. 
* gnu/packages/ci.scm (cuirass): Update to 4db99f6.
 2018-08-16 22:56:54 +02:00
Pierre Neidhardt
288c8c97e8
gnu: Add texlive-latex-ocgx2. 
* gnu/packages/tex.scm (texlive-latex-ocgx2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 16:53:29 -04:00
Pierre Neidhardt
7d50dff34c
gnu: Add texlive-latex-media9. 
* gnu/packages/tex.scm (texlive-latex-media9): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 16:53:26 -04:00
Mark H Weaver
b42592db6a
gnu: linux-libre: Update to 4.17.15. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.15.
(%linux-libre-hash): Update hash.
 2018-08-16 16:25:07 -04:00
Mark H Weaver
0dcfc00550
gnu: linux-libre@4.14: Update to 4.14.63. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.63.
(%linux-libre-4.14-hash): Update hash.
 2018-08-16 16:25:05 -04:00
Mark H Weaver
4edf8015ab
gnu: linux-libre@4.9: Update to 4.9.120. 
* gnu/packages/linux.scm (linux-libre@4.9): Update to 4.9.120.
 2018-08-16 16:25:02 -04:00
Mark H Weaver
88710fff04
gnu: linux-libre@4.4: Update to 4.4.148. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.148.
 2018-08-16 16:25:00 -04:00
Tobias Geerinckx-Rice
1dfb14d2f7
gnu: btrfs-progs: Update to 4.17.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1.
[source]: Remove patch.
[native-inputs]: Add python.
* gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-16 22:21:53 +02:00
Tobias Geerinckx-Rice
76c888cb94
gnu: e2fsprogs: Update to 1.44.3. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
[source]: Remove glibc-2.27 patch.
(extundelete)[source]: Apply e2fsprogs-1.44 patch.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file...
* gnu/local.mk (dist_patch_DATA): ...remove it, and add...
* gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new
file.
 2018-08-16 22:21:53 +02:00
Leo Famulari
1d9b96c08f
gnu: oil-shell: Update to 0.5.0. 
* gnu/packages/shells.scm (oil-shell): Update to 0.5.0.
 2018-08-16 16:08:13 -04:00
Leo Famulari
e2b2baa71d
Revert "gnu: Add r-hash." 
This reverts commit b9ff25999d.

This package is a duplicate of the r-hash package added in
4646d18eb7.
 2018-08-16 15:29:48 -04:00
Tobias Geerinckx-Rice
bf3c84bd2d
Revert "gnu: efivar: Update to 36." 
This reverts commit 025370b045.

See <https://github.com/rhboot/efivar/issues/111>, and
887fe1fbde7d72788ec348ab4665e1df3d0d704f...
 2018-08-16 21:09:12 +02:00
Marius Bakke
df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke
37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Tobias Geerinckx-Rice
8f60e5338a
gnu: python-pyxdg: Use PYPI-URI. 
* gnu/packages/freedesktop.scm (python-pyxdg)[source]: Use PYPI-URI.
 2018-08-16 18:06:48 +02:00
Tobias Geerinckx-Rice
bd835ff22f
gnu: multipath-tools: Set CC in #:make-flags. 
* gnu/packages/linux.scm (multipath-tools)[arguments]: Set ‘CC=gcc’
in #:make-flags instead of in a custom phase.
 2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice
12b99f753a
gnu: multipath-tools: Update to 0.7.7. 
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.7.
 2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice
21756abd6f
gnu: strace: Update to 4.24. 
* gnu/packages/linux.scm (strace): Update to 4.24.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice
acafdda143
gnu: psmisc: Update to 23.2. 
* gnu/packages/linux.scm (psmisc): Update to 23.2.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice
025370b045
gnu: efivar: Update to 36. 
* gnu/packages/linux.scm (efivar): Update to 36.
 2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice
c6dd279004
gnu: efivar: Update home page. 
* gnu/packages/linux.scm (efivar)[source, home-page]: Update URIs.
 2018-08-16 17:57:48 +02:00
Tobias Geerinckx-Rice
4505369c4e
gnu: libnfsidmap: Update to 0.27. 
* gnu/packages/linux.scm (libnfsidmap): Update to 0.27.
[source]: Update source URI.
[native-inputs]: Add autoconf.
 2018-08-16 17:57:48 +02:00
Marius Bakke
0a1f520d40
gnu: r-rmysql: Add missing dependency on OpenSSL. 
* gnu/packages/databases.scm (r-rmysql)[inputs]: Add OPENSSL.
 2018-08-16 17:39:10 +02:00
Amirouche
037d185111
gnu: argon2: Install pkgconfig file. 
* gnu/packages/password-utils.scm (argon2)[arguments]: Patch libargon2.pc.
Add phase to install it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2018-08-16 17:18:05 +02:00
Marius Bakke
5f9a9945b5
gnu: vlc: Fix build with recent versions of libx264. 
Fixes <https://bugs.gnu.org/32448>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/video.scm (%vlc-libx264-compat.patch): New variable.
(vlc)[source](patches): New field.
 2018-08-16 17:06:41 +02:00
Ricardo Wurmus
b64ce4b725
gnu: Add r-inspect. 
* gnu/packages/bioconductor.scm (r-inspect): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus
cea4d360d4
gnu: Add r-rootsolve. 
* gnu/packages/cran.scm (r-rootsolve): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus
fbdf05b1fc
gnu: Add r-proc. 
* gnu/packages/cran.scm (r-proc): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus
42744c1db6
gnu: Add ghc-chart. 
* gnu/packages/haskell.scm (ghc-chart): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus
cfac79ba6b
gnu: ghc-texmath: Update to 0.11.0.1. 
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.11.0.1.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus
cd4476032c
gnu: Add ghc-gtk2hs-buildtools. 
* gnu/packages/haskell.scm (ghc-gtk2hs-buildtools): New variable.
 2018-08-16 17:04:13 +02:00