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Author SHA1 Message Date
Ricardo Wurmus
e8e0f0e5b9
gnu: r-rcas: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.2.

Change-Id: I2406be8ad960d235124eabd3d1dab9605994d707
 2023-11-03 22:49:17 +01:00
Ricardo Wurmus
45b4cdb52e
gnu: r-rbgl: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.78.0.

Change-Id: I2f99033a91cfd9085df7388bb51418887a70735d
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
ff6b2e31c4
gnu: r-protgenerics: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.34.0.

Change-Id: Iede0129b8b5a5164f7efe982d4863e61e526444b
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
42504ecfc8
gnu: r-piano: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-piano): Update to 2.18.0.

Change-Id: I3511dae77061b5fca24b8b077b1fba34d613be7c
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fd0e3d812c
gnu: r-pfamanalyzer: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.2.0.

Change-Id: I31ab67f4ac5b5846038e4896fc44a65da8717b27
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
409d6d340d
gnu: r-pcamethods: Update to 1.94.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.94.0.

Change-Id: I67ae7bd85bf7353b038f85842b930337878ea313
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
81172ff685
gnu: r-pcaexplorer: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.28.0.

Change-Id: If0d0369c364c5c665a9cdfe71fb6ce7c4b466b40
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
fab197151b
gnu: r-oscope: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.32.0.

Change-Id: Ie2f593d31f51d6fd4954d6eaa633a60e02f8cbee
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d02feac2f1
gnu: r-organismdbi: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.44.0.

Change-Id: I8c018e323daab03e758e8690b31a75c06ae7d748
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
41f7fc3ef5
gnu: r-organism-dplyr: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.30.1.

Change-Id: Ib8c833cd10fa5cc845c954b97a587279cb29127f
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
23379de4c9
gnu: r-mzr: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.36.0.

Change-Id: I72f45ac3dbfea48e1327ab6bf87d5ee3eebd5b3d
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
376c30b09f
gnu: r-mzid: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.40.0.

Change-Id: Ie85887d844236cc8217f7ccabec284fc4040d3f7
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
24a57583ae
gnu: r-msnid: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.36.0.

Change-Id: I2461051259efcfa92694569689a374a60224e07c
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
31291d7aa1
gnu: r-msnbase: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.0.

Change-Id: If193d2756124c63fb308c62c4803378641b5a5d1
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
baa4a2629e
gnu: r-msa: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-msa): Update to 1.34.0.

Change-Id: Ief67a7396f222a640a3c481cc1ac66c725204e00
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
a1e7f3f4c8
gnu: r-mutationalpatterns: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.12.0.

Change-Id: Ia0dd49b80c91865677cdba3f03f6acabfb5b155f
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
db457fe95f
gnu: r-muscat: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.16.0.

Change-Id: Idf30d38c285a0fddd2aab924ca3017dfd25b587a
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
8288c11c51
gnu: r-mmuphin: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.16.0.

Change-Id: Ib8d6583456e76abea75d08dc21aaedffe5a46053
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4b48541f9
gnu: r-mfuzz: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.62.0.

Change-Id: If08902a17ecf2be089677634ee9d348e46295245
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
6faabe3a9f
gnu: r-methylkit: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.28.0.

Change-Id: I3040045d082d80a8e1f1e68691ad3c7bc561d3d3
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7b4893ddb8
gnu: r-metaneighbor: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.22.0.

Change-Id: I24a17f7af9ccfb6a942bd0f24b187948d16bc07a
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
b4421f7099
gnu: r-metagenomeseq: Update to 1.43.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.43.0.

Change-Id: Ia7e010752cb480bec3270f79dca748e2ccf4c53b
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9be6759f41
gnu: r-mdqc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.64.0.

Change-Id: If60e2e8f16e27362542298799dd30c70f91840fe
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
d485c6e39a
gnu: r-maser: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.20.0.

Change-Id: I02074e2ef18c4e2b3414d1d1ac3b325b3a28ee8b
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
9f7a451e6b
gnu: r-manor: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.74.0.

Change-Id: I646db2726748aefdd8f6a437571cd5e9ad613862
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
30cecc4883
gnu: r-makecdfenv: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.78.0.

Change-Id: Ia37c4a66000d5c781baf2cce4e226aeba7e01d38
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
35d10e3429
gnu: r-made4: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.76.0.

Change-Id: I867a25181c61abbb9d65b0c53dc9cbad9d96a293
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
7a12d712eb
gnu: r-maaslin2: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.16.0.

Change-Id: Ib2bcd9049ffccf548295a6f1100a0b1f636f2a31
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
3e7eeef0db
gnu: r-limma: Update to 3.58.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.58.1.
[propagated-inputs]: Add r-statmod.
[native-inputs]: Add r-knitr.

Change-Id: I6f0b489fa71dfa5b359fece946493091f828795e
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
01220bcd00
gnu: r-lfa: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.2.0.

Change-Id: I940fd19d4baf1ba2b5b1a5cb35b4adfc6679a273
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
277cfebf79
gnu: r-lea: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-lea): Update to 3.14.0.

Change-Id: I4a04bc3ea1e348825d40a60e12de6dffc2b2b1ef
 2023-11-03 22:49:16 +01:00
Ricardo Wurmus
c08b34c0e8
gnu: r-keggrest: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.42.0.

Change-Id: Ia2b21e89ede37cb437e894440869d5b9226f4244
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4b85fc7175
gnu: r-interactivedisplaybase: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.40.0.

Change-Id: Iac0d06e6e39b840ea35dbd0b219bc084bdb61c2d
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
2d821734f0
gnu: r-interactivedisplay: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.40.0.
[propagated-inputs]: Remove r-biocmanager, r-dt, and r-zlibbioc.

Change-Id: Id99c933e595dc0291fb3570cd3c8e894e2b1ed26
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
b535785eff
gnu: r-impute: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.76.0.

Change-Id: Idd60ab4f9888c957d1d6e4423a18d0b3b3305521
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
3c8f3921f0
gnu: r-rhtslib: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.0.

Change-Id: I4d3d80435b6125c8111a925fbd3bf36a22f588d0
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
e28ffb7341
gnu: r-rdisop: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.62.0.

Change-Id: I9a43730743b2c5272c811a560c92cac9dddef1c8
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
f246bfb448
gnu: r-raggedexperiment: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.26.0.
[propagated-inputs]: Add r-biocbaseutils.

Change-Id: I44e267380de6286edd61f896bd688753c9fc9ea9
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
c333878ff5
gnu: r-radiogx: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.6.0.

Change-Id: I8f2ef5c78fd749487ebb104b2fc11f6406cbf8cc
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
8fab582215
gnu: r-r4rna: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.30.0.

Change-Id: I4a43b9df3f658c6eb34563e6d841f8c9b22a9fb5
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
d3281df551
gnu: r-r3cseq: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.48.0.

Change-Id: Ifa2805c0d0c76ebcdf0927923b9cb6f44cf9c981
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4e5c14aae2
gnu: r-hpar: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.44.0.

Change-Id: Ie79908c8907b69b3ad537b23ff084025d5a76f14
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
7b39b6c668
gnu: r-harshlight: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.74.0.

Change-Id: Iceae81998c0eeccb8028c513eca46e70b388c985
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
135ebdd145
gnu: r-gsva: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.0.

Change-Id: Ib9bcb30aa669ff9d3445d38e22b656a8b43c2bb7
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cef824b9f4
gnu: r-gseabase: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.64.0.

Change-Id: I549083d0614b465d099c8ddfcccfca9e71a0a12b
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
844ea9ff66
gnu: r-gostats: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.68.0.

Change-Id: I3cb2e05944fd4d120e8c34454a5df892d9e105a2
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
f8946a7316
gnu: r-globaltest: Update to 5.56.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.56.0.

Change-Id: Ibf6ca75da7007a2164a3fa98989d6074eb50d266
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
b06f40836b
gnu: r-globalancova: Update to 4.20.0. 
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.20.0.

Change-Id: I99f47fabed129759582d568c11d8b495ee437706
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
e7b0370c46
gnu: r-glad: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.66.0.

Change-Id: I0b054d794790e0744aea5570b523fe37697152a9
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
4cc5a259ca
gnu: r-genomicranges: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.54.1.

Change-Id: I25c93f71691f7d8348c9a7580cd80b8a586a409e
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
2d2a79ca21
gnu: r-genomicfiles: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.38.0.

Change-Id: I4b5d7c93c6c839e501bbf5e612f7c3385eb44325
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
8fe366bda8
gnu: r-genomicfeatures: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.1.

Change-Id: I983eda850bdacb5955be0cbeec620e8835d5055e
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
df588ca56e
gnu: r-genomicdatacommons: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.26.0.

Change-Id: I4e820aaa390f0523467efe720c626d8aeffedd5d
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
0c4c142cde
gnu: r-genomicalignments: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.0.

Change-Id: I30f11c8b0c1cfd58b3501461be7d7465f92b4662
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
dab13c9e14
gnu: r-genomeinfodb: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.0.

Change-Id: I27a7edf8c07b8438bd57632287e89ba1b373e3de
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
9845ee6e36
gnu: r-genomation: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.34.0.

Change-Id: I0ca0de18d3fbcd5a4bf89043647c87849c97eb26
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
035d905385
gnu: r-geneoverlap: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.38.0.

Change-Id: Iade3e4e2c1e65ea160829642d57933d6b8a8f56c
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cdc6c83100
gnu: r-genefilter: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.84.0.

Change-Id: I8dc485dbed3600c0137969f24c39ce1241197347
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
149021491d
gnu: r-gage: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.52.0.

Change-Id: I673e00aaf9e901e17b3167cc6c32e55b90003734
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
cdb009029b
gnu: r-fastseg: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: Id3f6098e20062f7d007a54dc5cf83f11b5cf50dc
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
60b6dde680
gnu: r-ensembldb: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.26.0.

Change-Id: Ic2629e5eb3977a74f75fa7e3b5b4ad8e60f42ced
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
6f0023b8a4
gnu: r-enmix: Update to 1.38.01. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.38.01.
[propagated-inputs]: Remove r-preprocesscore; add r-irlba.

Change-Id: I0354f921aa427b6debb9fb5cde6a828529d7dbbf
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
5463d6e997
gnu: r-enhancedvolcano: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.20.0.

Change-Id: Iddbd14ecc8021030a23ffea6ae3217063d8bfebb
 2023-11-03 22:49:15 +01:00
Ricardo Wurmus
91bd1e4bb2
gnu: r-edger: Update to 4.0.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.1.
[native-inputs]: Add r-knitr.

Change-Id: Id72516ca581e9b65da3ea1723d008bf3d96b99c8
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
26eee94e13
gnu: r-edaseq: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.36.0.

Change-Id: I47f5fff9a9e7cbd1ef7d2f816b48e73bd8729a2e
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
eff815f296
gnu: r-dittoseq: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.0.

Change-Id: I6ebd9b4eb8fa2bca41fb7cd8672b3adef642de47
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
bb2fd2549d
gnu: r-dirichletmultinomial: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.44.0.

Change-Id: I4ab77836fdddcbc1764429c48934b5a9a106169a
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d7a02f5bf5
gnu: r-diffcyt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.22.0.

Change-Id: I96e4f706564a7d3438c2c19aa1bb47246ec9b40f
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
82a7530098
gnu: r-dexseq: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.48.0.

Change-Id: I77853f4e1f32063ca02727f046509a9794d34e83
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
f9206bb23b
gnu: r-deseq2: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.0.
[propagated-inputs]: Add r-matrixgenerics.

Change-Id: Ie9a7d4d47f43255c91b73760b5a6c41e4ca115f8
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
dae712d26d
gnu: r-complexheatmap: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.18.0.

Change-Id: I12810450763669d3bd9c3317453deb8ad5a0af42
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
c4c119d304
gnu: r-chipseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.52.0.

Change-Id: I237b841206bc72e2d6ead0dceca164087125d794
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
576f2079fc
gnu: r-chipseeker: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.38.0.

Change-Id: I43568da9c0c779e0e167b3e14e80b3264bfbc951
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
53e9d43a83
gnu: r-category: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.68.0.

Change-Id: I3b154d95cd1835ebf253169c391cb64670a6a54a
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
257fe883e6
gnu: r-bsgenome: Update to 1.70.1. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.1.
[propagated-inputs]: Add r-biocio.

Change-Id: I80b495762261353db10457c446eb706294eff825
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
1c103cad67
gnu: r-biovizbase: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.50.0.

Change-Id: Ie73b9060694011cca1f8dcbe521d6ed5a6c1303f
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
2fcc6e7ba6
gnu: r-biostrings: Update to 2.70.1. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.1.
[native-inputs]: Add r-knitr.

Change-Id: I11d29af17c47e495003441ff1c1b0928d1f7f752
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
7f14908649
gnu: r-biocparallel: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.36.0.

Change-Id: I0c780b3dbfa9300751be4aee571816424659948a
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
28d1244644
gnu: r-biomart: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.0.

Change-Id: Ibb83b0169aaf0b04236fdf4929405e550b1fa7c2
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0f171c8bce
gnu: r-biobase: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.62.0.

Change-Id: I8a2021b08985bc60854f452e2ea4506d16027534
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
0b6f06b5bd
gnu: r-bamsignals: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.34.0.

Change-Id: I25a356b455310048f3a012068a2e0e345f990c0c
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
b1d1a0e9d3
gnu: r-aroma-light: Update to 3.32.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.32.0.

Change-Id: I696b3a1ff0f12c8761f7c11f9acae9ade38a2a65
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
81087f7b83
gnu: r-annotationhub: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.0.

Change-Id: I7f69f2692982fb19a1c0f2619826b5121aca5d63
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
3b9d98df74
gnu: r-annotationforge: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.44.0.

Change-Id: I559d8814a99fb45a15e7456bccc3f60a66dd8311
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
53cd33068a
gnu: r-annotationfilter: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.26.0.

Change-Id: Id84a87bee67a61867022ef5582fe11111840f1d5
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
4b4ecae2c9
gnu: r-annotationdbi: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.0.

Change-Id: If88ce1515962e7ee58ec3dd525bf0bd210230e57
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
beafd8ef50
gnu: r-annotate: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.80.0.

Change-Id: I9ae842dc2e27ade1016404446746e48cbcbeef5f
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d79336aa5c
gnu: r-affxparser: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.74.0.

Change-Id: I7616b594c54c209b277bcbd4bc8ab70ccb521c05
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6f51787d5f
gnu: r-affyio: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.72.0.

Change-Id: I43fd8efe010669092a5aa3ac10f436f8be83208b
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
c849ee92f6
gnu: r-affycontam: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.60.0.

Change-Id: I65ab9049c889217eea1c18c2b9fc43eb090c192a
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
dde158c631
gnu: r-affycomp: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.78.0.

Change-Id: If05e314863a48dcdd9f39238a340b712ab85b805
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d2f808e301
gnu: r-affy: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.80.0.

Change-Id: If9d26b501ea42cbc9ab8c7c475757f307caa3f82
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
d04ab2829a
gnu: r-nebulosa: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.12.0.

Change-Id: I27082e1678d6fba4d8eb7b7858823f283d3f4744
 2023-11-03 22:49:14 +01:00
Ricardo Wurmus
6d4396aa7a
gnu: r-italics: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-italics): Update to 2.62.0.

Change-Id: I239c9e5242932f806e6a7caa03d967067d71f947
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
aae891dad3
gnu: r-isoformswitchanalyzer: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.2.0.

Change-Id: Idd5f4c733972d4a49e155c439114405e412a03f9
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
71ef609861
gnu: r-iranges: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.36.0.

Change-Id: Ie62dd9084be5a97c6b82c90b7b49a1e5cfef9a77
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4d978fcd17
gnu: r-infercnv: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.0.

Change-Id: Iad990fc16ff634dbbcb99d444eeb0590807f6777
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
76f03bca61
gnu: r-ideoviz: Update to 1.37.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.37.0.

Change-Id: I9e5c7a7c8993cc806fafc710d5b5261ed4d241fc
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
e061d0d925
gnu: r-bluster: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.12.0.

Change-Id: I2d84cc756ffe0da02f37a352441faf5f49b1d3d8
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ea1d58bf25
gnu: r-dyndoc: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.80.0.

Change-Id: Ib441b637725f1472cf0585a86bb61ceb188cbb9d
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
736217fae0
gnu: r-dropletutils: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.22.0.

Change-Id: I38e686e3bc31e08b63f708a9032f553ae041796d
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
965fecac9b
gnu: r-drimseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.30.0.

Change-Id: I1b06c2fdadaa0ff48d83d58cee976e8a15552532
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
00c73d58e7
gnu: r-derfinderhelper: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.36.0.

Change-Id: I800d211ccee7fdf122082145301adcb7395bcfca
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
96060bcb06
gnu: r-derfinder: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.36.0.

Change-Id: I3444c1db2005f19492cdda82aff4231ce273f709
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
073db5d4b2
gnu: r-densvis: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.0.
[propagated-inputs]: Add r-rtsne.

Change-Id: Icafa427d5312969bb41d706a9ba7058dc97136d6
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c5e614c7eb
gnu: r-delayedarray: Update to 0.28.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.28.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I182a54784b97189b5079047706cdb78fffe8b94a
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
63c1990700
gnu: r-degreport: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.0.

Change-Id: I2932573e35be1117d5c18a700579c263fa0e3819
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
6ef7931223
gnu: r-deepsnv: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.48.0.

Change-Id: Icbc9a58f3c2a3aabfd0d27c2e265b9e37d2e2715
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2b28a41667
gnu: r-decoupler: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.8.0.

Change-Id: I5481ddd8244451eabf54ad577aab27523c85df3a
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
ce196875f5
gnu: r-deconvr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.8.0.

Change-Id: Ia673573a345d64e82343eeb5fe0816aa7dcf166b
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
5422b1eb27
gnu: r-decontam: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.22.0.

Change-Id: Icca2a26d70f02c7dce5816f750b7303486a4735a
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
4e8df83d62
gnu: r-deconrnaseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.44.0.

Change-Id: Iacfa18c72f5194390069e3861b680fc4da10adee
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
2e0680f286
gnu: r-decomptumor2sig: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.18.0.

Change-Id: I3412ebce3ca3738ce8e1d0c2651e6b6d6f1bd52e
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
fd6ec75189
gnu: r-decipher: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.30.0.

Change-Id: I53f2a748c52e3a4b9dd26c82e443ffacb330b93a
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
33fe5a6f94
gnu: r-dearseq: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.14.0.

Change-Id: Ifdfe4264814b614f8642542cddf4395c6d725d19
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
11631558c6
gnu: r-damefinder: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.14.0.

Change-Id: I02f9205053c6ded787a437df30bd8ae8e68d9644
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
3f815da53c
gnu: r-dama: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.74.0.

Change-Id: Ieda9ccaf4b4d7fda967170ad9771e65388303f2c
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
8d8f9903b1
gnu: r-cummerbund: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.44.0.

Change-Id: I3417397cbcd463c817299ee2d37343f8933ff8b5
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
352f4079d3
gnu: r-coverageview: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.40.0.

Change-Id: Idb6c881d5a7804984577217908062cc37ad3d2b1
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
09a6c19465
gnu: r-coregx: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.0.

Change-Id: I80acbeb9a1850d3c7a374a71898a04654b5ebd2d
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
570177be67
gnu: r-cellid: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.10.0.
[propagated-inputs]: Add r-scater.
[native-inputs]: Remove r-scater.

Change-Id: I7be617a312fb009c6986e947e21b6cfd862db873
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
59798d25e2
gnu: r-cardelino: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.4.0.

Change-Id: I3f06c5b266bd6d4ae09da8ebb91743cb57468746
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
c2460ad512
gnu: r-breakpointr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.20.0.

Change-Id: I1598b330dbcf5b78ba9fc7623892870d1899233c
 2023-11-03 22:49:13 +01:00
Ricardo Wurmus
44765e6f2c
gnu: r-biocgenerics: Update to 0.48.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.48.1.

Change-Id: Ia2721e9ecbc2f4649962c4b4b5297616fbb5b169
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
278a436a00
gnu: r-biocversion: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.0.

Change-Id: Ic343f3a797330ae85ce86166805189d5738107f2
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
268cf54fbf
gnu: r-barcodetrackr: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.10.0.

Change-Id: Ia3ad0d4069441dd9a0b6a93f26e4791eae3ab408
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fed0d240b5
gnu: r-banocc: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.26.0.

Change-Id: I4f20020f49a3eeba9b97a1154b7772ee5232cb82
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
70f14dd31e
gnu: r-bandits: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.0.

Change-Id: Iafbafd9f7275b9936fa73d47f0b47a1a4ec6ea7a
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
7bd373b25e
gnu: r-bambu: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.0.

Change-Id: I14837124a4a081c29e696ad47e27aaf9d62127b1
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
caa56d8e98
gnu: r-badregionfinder: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.30.0.

Change-Id: I24f656ea77622211c04a4c09a7bb541159680b8a
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e777951d2b
gnu: r-bader: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.40.0.

Change-Id: I4aff6ebbbdfba705b97c0cf8b7a1166f855bafe6
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
3eb6468e63
gnu: r-basespacer: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.46.0.

Change-Id: I22960b809658603aec589daa7c85acc960727bd4
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f93200960b
gnu: r-baalchip: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.28.0.

Change-Id: Ice6916945c94202938b763e4cbabac35385375fd
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
319d9c6cd3
gnu: r-awst: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-awst): Update to 1.10.0.

Change-Id: I077dabb772d8a9c547e6ac23622b78c3c319f3cc
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
35fe2b495d
gnu: r-awfisher: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.16.0.

Change-Id: I08e4f96c8db4758aa0ef04a46fdd715bfcd76fd7
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
601f91b94d
gnu: r-attract: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-attract): Update to 1.54.0.

Change-Id: Ie8cfd6d7c45b6a92bc2c4789e7b2d088da470118
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e1487a6e2a
gnu: r-atsnp: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.18.0.

Change-Id: Ic703de99af48a7b95142b2fdfdf01a32490acf5e
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
74d22e52ce
gnu: r-atena: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-atena): Update to 1.8.0.

Change-Id: I99ef991a397053999dc4216189a76caf34e1b6c5
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
46b96b9383
gnu: r-asset: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-asset): Update to 2.20.0.

Change-Id: If9a92e17b7a5c7328d6352140bdd8732d4c2a78c
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
42dea0bd0a
gnu: r-assessorf: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.20.0.

Change-Id: I4beb9578807bc9cb433606c06f5505bc180770f7
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
2688eb505d
gnu: r-aspli: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.12.0.

Change-Id: I717b99ed6a348749b2549f2386f793b11106d0e2
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fa5b2b5dbc
gnu: r-asics: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.0.

Change-Id: Id9be760027609e1aa5729969e24e97b34f3141d9
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
9209b772b5
gnu: r-asgsca: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.36.0.

Change-Id: I0bcb7970cf29513a7551134c9b425cda337320ed
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
67db607930
gnu: r-aseb: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.0.

Change-Id: I375a4de7c9836fbf851ca033e7ab4ce25cb857a0
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
dc87880cb2
gnu: r-asafe: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.28.0.

Change-Id: If9d94cbb09fb2872fdf5224df95495666c2820c9
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fc79ff45b1
gnu: r-arrayquality: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.80.0.

Change-Id: I0ef5275399cc423785dfbb30b00ee5148f18906e
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f1b4c1eaec
gnu: r-arraymvout: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.60.0.

Change-Id: I42b04c02fd24de6898c6be7c18abeeb534737860
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
637217271f
gnu: r-arrayqualitymetrics: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.58.0.

Change-Id: I5ee044a089e154f13250890ef09f06c481598296
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e79d0a54b5
gnu: r-arrayexpress: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.62.0.

Change-Id: I4d96c4ea89cd51426b0405d26818062751c43d71
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
4b6dfa6785
gnu: r-antiprofiles: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.42.0.

Change-Id: Iee706af570ae789b897f4cfb0a53a474f8615d12
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
79d50ddc44
gnu: r-annmap: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.44.0.

Change-Id: Id960993131170a85231f5b21b354d67b5466ed99
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f625fab931
gnu: r-aneufinder: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.30.0.

Change-Id: Ib57882838b947c014b2fad4c8c829d91c7aa6a17
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
d79c200c1e
gnu: r-altcdfenvs: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.64.0.

Change-Id: I10775d097dfce34d8b3d2846971a4318368a871f
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
00dabe4d4f
gnu: r-alpsnmr: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.4.0.

Change-Id: If005837c237e26e32dda5c69a4bfdc9c20d7a0b1
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
5441a7cd9e
gnu: r-alphabeta: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.16.0.

Change-Id: I6abd11e9a22d73737975c660e565944aead7e14b
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
dc6a5a7045
gnu: r-alevinqc: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.0.

Change-Id: I96c53e6ac99d375da3a87cdc3ffad888f82bbb80
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
99a2acb5ab
gnu: r-aldex2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.34.0.
[propagated-inputs]: Add r-directlabels, r-lattice, and r-latticeextra.

Change-Id: Ibd4295392b188034231f54d129af02318510932e
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e2c41d2c65
gnu: r-anvil: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.0.

Change-Id: I154aa331580809b550f33a13cfcebecbcc165820
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4226d5138b
gnu: r-annotationhubdata: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.32.0.

Change-Id: Ic55ce4dbad0dd504760a40ef1ac4386318b262cd
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
25da6c744e
gnu: r-ancombc: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.4.0.

Change-Id: Idccde9e571c9ee7b0014bbe4f7328e5b37d764d9
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4771d5687c
gnu: r-anaquin: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.26.0.

Change-Id: I74a39d84856646bcbe0bbc9006c92095145017be
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
578489abe5
gnu: r-amaretto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.18.0.

Change-Id: I007bd666a0344d206b418d0c45a816518c5dc65c
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
84e9f46720
gnu: r-amplican: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.24.0.

Change-Id: Ifc0a8d5d2a98a4025ba85759bce75a452275f065
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6f7723c3ce
gnu: r-amountain: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.28.0.

Change-Id: If5cdf59afc38a70335b682b0687b63f33db77a63
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4658cffbfd
gnu: r-airpart: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.10.0.

Change-Id: Iafee8663fb558b5d73f662a4ea1fb0a1999e109e
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
77d2e3167d
gnu: r-aims: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-aims): Update to 1.34.0.

Change-Id: I494a799b261fedc20204837edbd9017e540de81f
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ac4e8f6cfd
gnu: r-adductomicsr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.18.0.

Change-Id: I4149f8e884c6e8486c5006103c5dd2da82a070e1
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ecd66e4010
gnu: r-agilp: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.34.0.

Change-Id: Iae3bbb41a891da0da550ad66ce686fe53fc35be7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e628902ae8
gnu: r-aggregatebiovar: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.12.0.

Change-Id: I4fc26155d43bf89bc5c937d59bae3960d79f1429
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
a8212a42d9
gnu: r-agdex: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.50.0.

Change-Id: I2e9bc52fc339ce7300f13485a16f7e674ed7cb73
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e3acce66d9
gnu: r-affyrnadegradation: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.48.0.

Change-Id: I2f12a2ada8aa83851a25cd16884c2c72e2ab3f02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
97b1261e63
gnu: r-affyplm: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.78.0.

Change-Id: I96fe37a22d07abc00125df0a229cf7d2d0d136c7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
14d87c1819
gnu: r-affylmgui: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.76.0.

Change-Id: I169ee4e2a1462140fe2a203ef4a934fcf386a566
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
8ea9b315fd
gnu: r-affyilm: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.54.0.

Change-Id: I1b5989c62da7ce108d3e8ec344fd47a7b33f2856
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4d0c23545b
gnu: r-affixcan: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.20.0.

Change-Id: Ica782aa7cb2603374425e2abc921ade43592aa02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
c02bc41c68
gnu: r-adsplit: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.72.0.

Change-Id: I2851c235df8c18ae50b931736d65f02aa4403d39
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2f0f6284d1
gnu: r-adimpute: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0.

Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
fc9baf4ad2
gnu: r-adamgui: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0.

Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2662a6af48
gnu: r-adam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0.

Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
de5c088e06
gnu: r-adacgh2: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0.

Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
7e7d075194
gnu: r-absseq: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0.

Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
d08d58d828
gnu: r-abarray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0.

Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6ea450f390
gnu: r-debcam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0.
[arguments]: Remove old comment and enable tests.
[inputs]: Replace icedtea with openjdk11.

Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
bcf0ecd1ec
gnu: Add r-hpo-db. 
* gnu/packages/bioconductor.scm (r-hpo-db): New variable.

Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6304d3cce6
gnu: Add r-mpo-db. 
* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
48bf30e3b1
gnu: Add r-fancova. 
* gnu/packages/cran.scm (r-fancova): New variable.

Change-Id: I9bfef352be86c08707edfee0bfb171094114d158
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
75ce5b0466
gnu: Add r-collapse. 
* gnu/packages/cran.scm (r-collapse): New variable.

Change-Id: Ib6690a85987e14930057ed960fdd229706b0c35d
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
4f85beac2d
gnu: Add r-msexperiment. 
* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
bbe7ea0d27
gnu: Add r-sparsearray. 
* gnu/packages/bioconductor.scm (r-sparsearray): New variable.

Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
f80de2f03f
gnu: Add r-metabocoreutils. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable.

Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
 2023-11-03 22:49:10 +01:00
Tobias Geerinckx-Rice
2059b9fbe0
system: vm: Include the cirrus driver in the initrd. 
This is Ludo's suggestion at <https://issues.guix.gnu.org/36069#26>,
with an added guard against duplicates and a tweaked comment.

* gnu/system/vm.scm (virtualized-operating-system): Add "cirrus" to the
list of INITRD-MODULES.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I1a86286586eee0b8c39706544778c7911a86da33
 2023-10-29 02:00:00 +02:00
Afkhami, Navid
c9361460de
gnu: Add r-miamiplot. 
* gnu/packages/bioinformatics.scm (r-miamiplot): New variable.

Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-03 14:10:13 +01:00
Skylar Chan
6ae8fd7aa7
gnu: cmark-gfm: Update to 0.29.0.gfm.13. 
* gnu/packages/markup.scm (cmark-gfm): Update to 0.29.0.gfm.13.
[arguments]: Use G-expressions.

Change-Id: Id8f856cfa8020bc8028d9bf3041a7c651b8b0102
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Timotej Lazar
021b222cda
gnu: mupdf: Update to 1.23.4. 
* gnu/packages/pdf.scm (mupdf): Update to 1.23.4.
[source]: Switch from gz to lz tarball.

Change-Id: Ie4d20c95e509960390dce3da77315fa2bf2d688f
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Timotej Lazar
c9a7cbf0b7
gnu: syncthing: Update to 1.25.0. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.25.0.

Change-Id: I39ebd12e96fb09386cf51bd42cd5241f3820c16c
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Artyom V. Poptsov
ada2152893
gnu: go-github-com-hjson-hjson-go: Update to 4.3.1. 
* gnu/packages/golang.scm (go-github-com-hjson-hjson-go): Update to 4.3.1.

Change-Id: Iee2aef614686cbf79f388e2dd9435745d5502e2a
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Benjamin
66ff9c82a3
gnu: neovim: Update to 0.9.4. 
* gnu/packages/vim.scm (neovim): Update to 0.9.4.

Change-Id: I7246390c69875cbc1d7442afe38abd31ce85616b
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:01:29 +00:00
Julien Lepiller
9024524de1
gnu: guile-netlink: Update to 1.2.1. 
* gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.2.1.

Change-Id: I3018cf7e0b6cd460bf27b8bbe1b031cf0dafe547
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:00:41 +00:00
Jaeme Sifat
809f461ec1
gnu: foot: Update to 1.16.2. 
* gnu/packages/terminals.scm (foot): Update to 1.16.2.
[arguments]: Use gexps.

Change-Id: I0615f6251a918a572369c05b126853f79e9fca4c
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:59:41 +00:00
Kaelyn Takata
ada7e0d042
gnu: wine-minimal: Update to 8.18. 
* gnu/packages/wine.scm (wine-minimal): Update to 8.18.
[properties]: Set upstream-name.

Change-Id: I018c320a990bf101d193095b68c44312ce9653a4
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:56:01 +00:00
Simon Tournier
4471cfd099
gnu: emacs-ox-rss: Update upstream URL. 
* gnu/packages/emacs-xyz.scm (emacs-ox-rss)[source]: Update upstream URL.

Change-Id: I66f0aa2cf5ee08705a89d0683e638e3fa1e1fb12
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
5378149acc
gnu: msmtp: Update to 1.8.25. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.25.

Change-Id: If6a03b52734fa09dc6e8ffa5dd893f7d80b86aac
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
93b8d2e730
gnu: wlr-randr: Update to 0.3.1. 
* gnu/packages/wm.scm (wlr-randr): Update to 0.3.1.

Change-Id: I1b0d9ae20c9c4a249b3679431101edfa61e39d44
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Cayetano Santos
a4ec0c6ca0
gnu: emacs-mastodon: Update to 1.0.13. 
* gnu/packages/emacs-xyz.scm (emacs-mastodon): Update to 1.0.13.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
399cd64bc9
gnu: asciinema: Update to 2.4.0. 
* gnu/packages/terminals.scm (asciinema): Update to 2.4.0.

Change-Id: I3e0fc7cc16aaebdf8346bb715f07021a5d568163
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Felix Gruber
1853fd9c2f
gnu: strawberry: Update to 1.0.21. 
* gnu/packages/music.scm (strawberry): Update to 1.0.21.
[inputs]: Add libebur128.

Change-Id: I2f0094ab1f87301cbf05c13ca5742bb03703b0b4
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
kiasoc5
e20ef7d2d1
gnu: dragonfly-reverb: Update to 3.2.10. 
* gnu/packages/music.scm (dragonfly-reverb): Update to 3.2.10.

Change-Id: I4b0dc4e7aeae381467690305b9551e53341ef8b7
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Afkhami, Navid
28ebbe2be8
gnu: Add r-matrixtests. 
* gnu/packages/cran.scm (r-matrixtests): New variable.

Change-Id: I62f7bd760fc8603425906c304ef4293da1c0cf61
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-02 18:34:09 +01:00
Afkhami, Navid
64dbce8381
gnu: Add r-nestedcv. 
* gnu/packages/cran.scm (r-nestedcv): New variable.

Change-Id: Id998b4192565c220f8d238963ef61217aed12bd3
 2023-11-02 18:34:09 +01:00
Jelle Licht
f5346094f0
gnu: emacs-cider: Include enrich-classpath wrapper scripts. 
* gnu/packages/emacs-xyz.scm (emacs-cider)[arguments]<#:include>: Add
"^lein\\.sh$" and "^clojure\\.sh$" to the list of regexes for installed files.

Change-Id: I02507d3cd012dbe827751a21870e4bc1f13d93b5
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:22 +04:00
Jelle Licht
0f2ec2117b
gnu: emacs-cider: Update to 1.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.9.0.

Change-Id: I25c511e93bdd7ec19a74ef10d0b5527a9e0b922d
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:21 +04:00
Jelle Licht
7c2d36d014
gnu: emacs-clj-refactor: Update to 3.10.0. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.10.0.

Change-Id: Idef5f44e2e3a8ed149d46ba2307184ffee21de4b
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:20 +04:00
Jelle Licht
1ebc1651a6
gnu: emacs-clojure-mode: Update to 5.18.0. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.18.0.

Change-Id: I84cadfe0af5e1635abd02593e4f5f02b53645b39
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:19 +04:00
Jelle Licht
a5c7ceda0a
gnu: emacs-org-contrib: Remove dependency on emacs-cider. 
Since version 0.4 the ob-clojure-literate.el file with a dependency on cider
was removed from org-contrib.

* gnu/packages/emacs-xyz.scm (emacs-org-contrib)[native-inputs]: Remove
emacs-cider.

Change-Id: I838e965a819d9793424b6310ae324460b260afcc
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:18 +04:00
Ricardo Wurmus
0647f308b4
gnu: r-rjava: Use OpenJDK 11. 
See https://github.com/s-u/rJava/issues/307.

* gnu/packages/cran.scm (r-rjava)[arguments]: Use search-input-file.
[inputs]: Replace icedtea-8 with openjdk11.

Change-Id: I9e67210f1bfd585fb53845dad55a56a639a5d806
 2023-11-01 19:33:38 +01:00
Simon Tournier
3991d9e4d9
Revert "gnu: lvm2: Remove systemd rule." 
This reverts commit c0895371c5, which does not
correctly fix the issue, as reported by Josselin Poiret <dev@jpoiret.xyz> in
<https://issues.guix.gnu.org/issue/66586#6>.
 2023-10-31 22:15:33 +01:00
Afkhami, Navid
b963bf6b1d
gnu: python-baltica: Add missing R inputs. 
* gnu/packages/bioinformatics.scm (python-baltica)[propagated-inputs]: Add
r-biocmanager, r-dplyr, r-genomicranges, r-here, r-openxlsx, r-optparse,
r-readr, r-rsamtools, r-stringr, r-tidyr, r-upsetr, and r-yaml.
[description]: Add an extra space after a period.

Change-Id: I8c1bb556048b406b95e081155a46da17a6be5676
 2023-10-31 22:03:24 +01:00
Ricardo Wurmus
4254269ad5
gnu: r-logspline: Update to 2.1.21. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.21.

Change-Id: Ib4ec6124282851bcc52eb87f7e30027e801f0531
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
0858b9c472
gnu: r-withr: Update to 2.5.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.2.

Change-Id: Ie4265bc4a6d9c54e3f64ab12ae0d14c716b4e03f
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
90a8594c7b
gnu: r-checkmate: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.3.0.

Change-Id: I0599e3a4e174cc311c37d7c334087eda15deafc1
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
76a12b07d1
gnu: r-dbplyr: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.4.0.

Change-Id: I8cf5c1b47b47a41b606e76d0b5e14425946f0903
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
e2d4dd5e1c
gnu: r-knitr: Update to 1.45. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.45.

Change-Id: I1317366a0041f29b284e24d056734498f9d35cd7
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
4f4ab05dc4
gnu: r-strex: Update to 1.6.1. 
* gnu/packages/cran.scm (r-strex): Update to 1.6.1.

Change-Id: Id37ef19901a3548128816e2677148405b5845297
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
a14e534dbd
gnu: r-seuratobject: Update to 5.0.0. 
* gnu/packages/cran.scm (r-seuratobject): Update to 5.0.0.
[propagated-inputs]: Add r-generics, r-lifecycle, and r-spam.

Change-Id: I8486d42c1f9d3e5f4b9fc091a4d4aab7b1c803b6
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
75db05d7db
gnu: r-rfast: Update to 2.0.9. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.9.
[propagated-inputs]: Add r-rcppparallel.

Change-Id: I551a2b1745b937454b5aad99f4620839f9a89902
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
d0013cb066
gnu: r-spatstat: Update to 3.0-7. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-7.

Change-Id: I8c54279b92acb7532b1050613a60ba2e96c115eb
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
12167e57e8
gnu: r-spatstat-linnet: Update to 3.1-3. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-3.

Change-Id: I7f1dadd2e8fecf03cbde3c56de3a3384ba8cf24d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8638f87510
gnu: r-posterior: Update to 1.5.0. 
* gnu/packages/cran.scm (r-posterior): Update to 1.5.0.

Change-Id: I3fa7adca749efcbe0d8b6ab0f707e70a1e895d2d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
bd15e8babf
gnu: r-adagio: Update to 0.9.2. 
* gnu/packages/cran.scm (r-adagio): Update to 0.9.2.

Change-Id: I2131b973194fcf710fed1ac4c425717278269308
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
199f6a9967
gnu: r-rintrojs: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.3.

Change-Id: I184740e9bd1ed8d087c2985d08b12f4fe31d72b7
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8aafa8bd45
gnu: r-sampling: Update to 2.10. 
* gnu/packages/cran.scm (r-sampling): Update to 2.10.

Change-Id: I7a3407c77fb71a8a4355415beeee09edc2a8908c
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8ab1ea6850
gnu: r-polspline: Update to 1.1.24. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.24.

Change-Id: I323fc3b50c1d215d749cd814a684463810e4bfc4
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d034d0a1a0
gnu: r-grimport2: Update to 0.3-1. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.3-1.

Change-Id: I6b7de08f4d24a3398e8b788fbe726792ac38a59a
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
2fec2b0a7a
gnu: r-gridpattern: Update to 1.1.1. 
* gnu/packages/cran.scm (r-gridpattern): Update to 1.1.1.

Change-Id: I63bc1df4fc6f8f5e9931a6a82db68df0e933a1cb
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
05e2f170f7
gnu: r-performance: Update to 0.10.8. 
* gnu/packages/cran.scm (r-performance): Update to 0.10.8.

Change-Id: Ic0c7a1f1402ae5a63bf433fd2f874e24eab5a216
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d7244ece08
gnu: r-wrs2: Update to 1.1-5. 
* gnu/packages/cran.scm (r-wrs2): Update to 1.1-5.
[propagated-inputs]: Remove r-mc2d.

Change-Id: I0346e018b401143b4f9cf65845cf4d3b210ed54b
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
62ad4b2566
gnu: r-rbibutils: Update to 2.2.16. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.16.

Change-Id: I188dddbb7fa03f43574e50d43f741c5398e7c331
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d941cec521
gnu: r-lambertw: Update to 0.6.9. 
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.9.

Change-Id: Ia36a96ddd78585768b88ab662d5c5ba31aa40744
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
e11a490138
gnu: r-mbess: Update to 4.9.3. 
* gnu/packages/cran.scm (r-mbess): Update to 4.9.3.

Change-Id: I8ada8e1a56b7497145409de82865d5d9d83da6e3
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8e44a14be6
gnu: r-poorman: Update to 0.2.7. 
* gnu/packages/cran.scm (r-poorman): Update to 0.2.7.

Change-Id: I9c23bd2bbba0eb6f6b2b6b6ac1cc11524b5c6980
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
03c1f71501
gnu: r-consort: Update to 1.2.1. 
* gnu/packages/cran.scm (r-consort): Update to 1.2.1.

Change-Id: I28d1749044a38f9a9144eeb5675d6607bf973c53
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
221b9422fc
gnu: r-abn: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.2.

Change-Id: Icf3de104b61e79b9a7c9fbfecb0e071d6e46ef9d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
a9ee95aec1
gnu: r-htmltable: Update to 2.4.2. 
* gnu/packages/cran.scm (r-htmltable): Update to 2.4.2.
[arguments]: Replace minified JavaScript.
[native-inputs]: Add esbuild and js-jquery.

Change-Id: Iacc17957c2a773ca651d3a9e980a3e4281874829
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
dfd3934b6b
gnu: r-rsqlite: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.2.

Change-Id: I97532cd5834e0aad84d7072f7f93bae612ad93bf
 2023-10-31 21:57:58 +01:00
Efraim Flashner
e82b700228
gnu: b43-tools: Use make-flags. 
* gnu/packages/firmware.scm (b43-tools)[arguments]: Add make-flags.
Use make-flags in custom 'build and 'install phases.  Remove trailing #t
from phases.

Change-Id: I8576351ecd571d191598943a2d143ab3e3e9da09
 2023-10-31 22:32:53 +02:00
Maxim Cournoyer
d96a9c7473
gnu: python-radio-beam: Update to 0.3.6. 
* gnu/packages/astronomy.scm (python-radio-beam): Update to 0.3.6.
[native-inputs]: Add python-setuptools-scm.

Change-Id: I3be87a22b701119699d37104f8df4f3fab44d0c8
 2023-10-31 13:15:25 -04:00
Maxim Cournoyer
6318e7a851
gnu: python-spectral-cube: Update to 0.6.3. 
* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.3.
[native-inputs]: Add python-setuptools-scm.

Change-Id: I8b701081d2c8ea2fd8f25ca845e8e26760fdc094
 2023-10-31 13:15:25 -04:00
Sharlatan Hellseher
5e5547d1b3
gnu: Add python-spectral-cube. 
* gnu/packages/astronomy.scm (python-spectral-cube): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:25 -04:00
Sharlatan Hellseher
c1e3ad850d
gnu: Add python-aplpy. 
* gnu/packages/astronomy.scm (python-aplpy): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00
Sharlatan Hellseher
4b1dce7185
gnu: Add python-pyregion. 
* gnu/packages/astronomy.scm (python-pyregion): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00