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66175 Commits

Author SHA1 Message Date
Ricardo Wurmus
3c51abe059
gnu: Add texlive-titling. 
* gnu/packages/tex.scm (texlive-titling): New variable.
 2021-05-04 15:17:17 +02:00
Guillaume Le Vaillant
7ca996c3f5
gnu: sbcl-trivial-backtrace: Move lift to native-inputs. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to...
  [native-inputs]: ... here.
 2021-05-04 13:58:31 +02:00
Sharlatan Hellseher
4c2f810f97
gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bd 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update
  to 1.1.0-1.6eb65bd.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:53:03 +02:00
Sharlatan Hellseher
f46b6d6487
gnu: sbcl-static-dispatch: Update to 0.5. 
* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5.
  [version]: Use annotated tag of the latest release in upstream.
  [native-inputs]: Remove prove, add fiveam.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:43:02 +02:00
Sharlatan Hellseher
36d4877041
gnu: sbcl-cl-environments: Update to 0.4. 
* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4.
  [version]: Use annotated tag instead of direct commit, there are
  upstream releases available now.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:36:55 +02:00
Ricardo Wurmus
7694acebd1
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
 2021-05-04 10:11:34 +02:00
Ricardo Wurmus
b602ec9fba
gnu: r-mixomics: Update to 6.14.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1.
[propagated-inputs]: Add r-biocparallel.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
4286233e77
gnu: r-catalyst: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
2191a414ea
gnu: r-scran: Update to 1.18.7. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
3c59d34107
gnu: r-biocpkgtools: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b75b3ba2c7
gnu: r-experimenthub: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
c1942727cf
gnu: r-bioassayr: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
5bd5f755f2
gnu: r-universalmotif: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b410f072b5
gnu: r-icobra: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b2bdc2f130
gnu: r-interactionset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
390098ddd4
gnu: r-systempiper: Update to 1.24.6. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
fc1aef2ccd
gnu: r-genomeinfodb: Update to 1.26.7. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
8bd3170bcf
gnu: r-biocgenerics: Update to 0.36.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
d4051161e7
gnu: r-ensembldb: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
7072dc8c53
gnu: r-gage: Update to 2.40.2. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
3b002a49d4
gnu: r-annotationhub: Update to 2.22.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
8ddbf984a2
gnu: r-future-apply: Set HOME directory variable. 
* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME".
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
553767d02a
gnu: r-matrixstats: Set HOME directory variable. 
* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase
"set-HOME".
 2021-05-04 09:47:32 +02:00
Hartmut Goebel
ec4012c582
gnu: sequoia: Update to 1.1.0. 
* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove
  phase "package", add phases "fix-rand-dependency" and "fix-permissions".
 2021-05-04 09:44:14 +02:00
Ricardo Wurmus
fcd002ccfa
gnu: r-pcapp: Update to 1.9-74. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-74.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
685f173894
gnu: r-sfsmisc: Update to 1.1-11. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-11.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
916477772e
gnu: r-tidyselect: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.1.1.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
f5335bffe5
gnu: r-viridislite: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.0.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
0ad98a178b
gnu: r-viridis: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.0.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
2fbdb15669
gnu: r-r-rsp: Add build phase to set HOME directory. 
* gnu/packages/statistics.scm (r-r-rsp)[arguments]: Add build phase
"set-HOME".
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
2eab3898e1
gnu: r-r-cache: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.15.0.
[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
3ff0d6f797
gnu: r-dt: Update to 0.18. 
* gnu/packages/statistics.scm (r-dt): Update to 0.18.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
45cdf3ad61
gnu: r-segmented: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-4.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
c23b2fac17
gnu: r-rsqlite: Update to 2.2.7. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.7.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
e94cf411f0
gnu: r-bitops: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-bitops): Update to 1.0-7.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
866646194c
gnu: r-rcpparmadillo: Update to 0.10.4.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.4.0.0.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
883eab3ec6
gnu: r-withr: Update to 2.4.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.4.2.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
8530eaa5d6
gnu: r-devtools: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.0.
[propagated-inputs]: Remove r-covr and r-dt; add r-fs and r-lifecycle.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
2666871c1b
gnu: r-openssl: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.4.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
23a4436daf
gnu: r-tibble: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.1.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
5c45c5adfa
gnu: r-rlang: Update to 0.4.11. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.11.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
fe41452faf
gnu: r-knitr: Update to 1.33. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.33.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
dfafea7951
gnu: r-highr: Update to 0.9. 
* gnu/packages/statistics.scm (r-highr): Update to 0.9.
[propagated-inputs]: Add r-xfun.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
d1f236045b
gnu: r-formatr: Update to 1.9. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.9.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
321fc2e752
gnu: r-survival: Update to 3.2-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-11.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
db1323aaa8
gnu: r-spatial: Update to 7.3-14. 
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-14.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
9015ae66d3
gnu: r-nnet: Update to 7.3-16. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-16.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
88bf883bc5
gnu: r-mgcv: Update to 1.8-35. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-35.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
9042db14b9
gnu: r-lattice: Update to 0.20-44. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-44.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
50c7032eef
gnu: r-kernsmooth: Update to 2.23-20. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-20.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
27e873a5e3
gnu: r-cluster: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.2.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
01f58c6270
gnu: r-class: Update to 7.3-19. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-19.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
73efca4064
gnu: r-mass: Update to 7.3-54. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-54.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
3cf8eab28f
gnu: r-boot: Update to 1.3-28. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-28.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
43a2eaad02
gnu: r-mlr3misc: Update to 0.9.1. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.1.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
065f3eac48
gnu: r-phangorn: Update to 2.7.0. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.7.0.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
9788d909ca
gnu: r-tidymodels: Update to 0.1.3. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.3.
[propagated-inputs]: Remove r-magrittr; add r-conflicted and r-workflowsets.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
039c652a94
gnu: r-tidytext: Update to 0.3.1. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.3.1.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
0a7a9fd6a1
gnu: r-workflowsets: Update to 0.0.2. 
* gnu/packages/cran.scm (r-workflowsets): Update to 0.0.2.
[propagated-inputs]: Add r-generics.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
d14100cfea
gnu: r-tune: Update to 0.1.5. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.5.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
62824117c0
gnu: r-exactranktests: Update to 0.8-32. 
* gnu/packages/cran.scm (r-exactranktests): Update to 0.8-32.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
205a03eb2c
gnu: r-transphylo: Update to 1.4.5. 
* gnu/packages/cran.scm (r-transphylo): Update to 1.4.5.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
7fb817783d
gnu: r-muhaz: Update to 1.2.6.4. 
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.4.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
278a60cd56
gnu: r-clusterr: Update to 1.2.3. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.3.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
81e94675ff
gnu: r-spatstat-core: Update to 2.1-2. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.1-2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
09a0040397
gnu: r-spatstat-geom: Update to 2.1-0. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.1-0.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
c5abf83937
gnu: r-lightgbm: Update to 3.2.1. 
* gnu/packages/cran.scm (r-lightgbm): Update to 3.2.1.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
7ac6dd6403
gnu: r-scatterpie: Update to 0.1.6. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.6.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
73f7bcf280
gnu: r-bridgesampling: Update to 1.1-2. 
* gnu/packages/cran.scm (r-bridgesampling): Update to 1.1-2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
d7cdf463e9
gnu: r-keyring: Update to 1.2.0. 
* gnu/packages/cran.scm (r-keyring): Update to 1.2.0.
[propagated-inputs]: Remove r-getpass; add r-askpass.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
df9774306a
gnu: r-rsconnect: Update to 0.8.17. 
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.17.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
6d2b288e24
gnu: r-tam: Update to 3.6-45. 
* gnu/packages/cran.scm (r-tam): Update to 3.6-45.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
2dc5918ef9
gnu: r-bdgraph: Update to 2.64. 
* gnu/packages/cran.scm (r-bdgraph): Update to 2.64.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
094341c4bf
gnu: r-openmx: Update to 2.19.5. 
* gnu/packages/cran.scm (r-openmx): Update to 2.19.5.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
ecba34b7d1
gnu: r-rpf: Update to 1.0.7. 
* gnu/packages/cran.scm (r-rpf): Update to 1.0.7.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
ee70707e99
gnu: r-rsvg: Update to 2.1.2. 
* gnu/packages/cran.scm (r-rsvg): Update to 2.1.2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
5aa13eeb6d
gnu: r-qqman: Update to 0.1.8. 
* gnu/packages/cran.scm (r-qqman): Update to 0.1.8.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
570a872ad8
gnu: r-anthropometry: Update to 1.15. 
* gnu/packages/cran.scm (r-anthropometry): Update to 1.15.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
9c6148d3e5
gnu: r-adagio: Update to 0.8.4. 
* gnu/packages/cran.scm (r-adagio): Update to 0.8.4.
[propagated-inputs]: Add r-lpsolve.
[native-inputs]: Remove gfortran.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
12d5937160
gnu: r-qgam: Update to 1.3.3. 
* gnu/packages/cran.scm (r-qgam): Update to 1.3.3.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
eda03d2462
gnu: r-emojifont: Update to 0.5.5. 
* gnu/packages/cran.scm (r-emojifont): Update to 0.5.5.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
deb085d8bc
gnu: r-parameters: Update to 0.13.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.13.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
d25069df0b
gnu: r-terra: Update to 1.2-5. 
* gnu/packages/cran.scm (r-terra): Update to 1.2-5.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8bf6516ff9
gnu: r-xgboost: Update to 1.4.1.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.4.1.1.
[propagated-inputs]: Add r-jsonlite.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
e0121c91fd
gnu: r-ingredients: Update to 2.2.0. 
* gnu/packages/cran.scm (r-ingredients): Update to 2.2.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
4cfd543cc1
gnu: r-dqrng: Update to 0.3.0. 
* gnu/packages/cran.scm (r-dqrng): Update to 0.3.0.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
aca781b9a4
gnu: r-clue: Update to 0.3-59. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-59.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
abc63422de
gnu: r-ggplotify: Update to 0.0.6. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.6.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
da1f80f1e1
gnu: r-svmisc: Update to 1.1.4. 
* gnu/packages/cran.scm (r-svmisc): Update to 1.1.4.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
5d670caf8f
gnu: r-rjava: Update to 1.0-4. 
* gnu/packages/cran.scm (r-rjava): Update to 1.0-4.
[inputs]: Remove pcre.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8b5eeb9f96
gnu: r-bookdown: Update to 0.22. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.22.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
bacfd45f67
gnu: r-pegas: Update to 1.0. 
* gnu/packages/cran.scm (r-pegas): Update to 1.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
4ab5855f39
gnu: r-rsvd: Update to 1.0.5. 
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.5.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
e2a1a68e60
gnu: r-future: Add build phase to set HOME directory. 
* gnu/packages/cran.scm (r-future)[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
1b7948536b
gnu: r-parallelly: Update to 1.25.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.25.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8c89cc7edb
gnu: r-listenv: Add phase to set HOME directory. 
* gnu/packages/cran.scm (r-listenv)[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
2ac230527b
gnu: r-rmpfr: Update to 0.8-4. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-4.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
81e81183a6
gnu: r-ouch: Update to 2.16. 
* gnu/packages/cran.scm (r-ouch): Update to 2.16.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
fbe71c6c90
gnu: r-rgl: Update to 0.106.8. 
* gnu/packages/cran.scm (r-rgl): Update to 0.106.8.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
75a461aa74
gnu: r-rcppparallel: Update to 5.1.3. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.3.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
3dbd04d7ca
gnu: r-gh: Update to 1.3.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.3.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
47a15ac7d0
gnu: r-ggeffects: Update to 1.1.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
363a669276
gnu: r-performance: Update to 0.7.1. 
* gnu/packages/cran.scm (r-performance): Update to 0.7.1.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
787a0b26e1
gnu: r-bayestestr: Update to 0.9.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.9.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
da20f1f0b2
gnu: r-tmb: Update to 1.7.20. 
* gnu/packages/cran.scm (r-tmb): Update to 1.7.20.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
3e4baacd91
gnu: r-emmeans: Update to 1.6.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
795516ff57
gnu: r-multcomp: Update to 1.4-17. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-17.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
94080fc0aa
gnu: r-magick: Update to 2.7.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.2.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
799e6b1b20
gnu: r-svdialogs: Update to 1.0.3. 
* gnu/packages/cran.scm (r-svdialogs): Update to 1.0.3.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
c4300dc298
gnu: r-svgui: Update to 1.0.1. 
* gnu/packages/cran.scm (r-svgui): Update to 1.0.1.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
0ef00dd7f6
gnu: r-raster: Update to 3.4-10. 
* gnu/packages/cran.scm (r-raster): Update to 3.4-10.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
ea359fb92f
gnu: r-doby: Update to 4.6.10. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.10.
[propagated-inputs]: Add r-curry and r-microbenchmark.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
b30b025c6f
gnu: r-writexl: Update to 1.4.0. 
* gnu/packages/cran.scm (r-writexl): Update to 1.4.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
2f88711ce3
gnu: r-flextable: Update to 0.6.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.5.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
8067bcdf53
gnu: r-entropy: Update to 1.3.0. 
* gnu/packages/cran.scm (r-entropy): Update to 1.3.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
070b766127
gnu: r-brglm: Update to 0.7.2. 
* gnu/packages/cran.scm (r-brglm): Update to 0.7.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
d11b3f575f
gnu: r-rbibutils: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.1.1.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
58327ba184
gnu: r-reticulate: Update to 1.20. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.20.
[propagated-inputs]: Add r-png and r-withr.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
c2cc32c88a
gnu: r-rastervis: Update to 0.50.2. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
0161d0bcf0
gnu: r-later: Update to 1.2.0. 
* gnu/packages/cran.scm (r-later): Update to 1.2.0.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
22778956e8
gnu: r-parsedate: Update to 1.2.1. 
* gnu/packages/cran.scm (r-parsedate): Update to 1.2.1.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
f65d223eec
gnu: r-pillar: Update to 1.6.0. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
329bd33fb8
gnu: r-vctrs: Update to 0.3.8. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.8.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
13ec1ba40c
gnu: r-processx: Update to 3.5.2. 
* gnu/packages/cran.scm (r-processx): Update to 3.5.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
b7d7add1ad
gnu: r-cli: Update to 2.5.0. 
* gnu/packages/cran.scm (r-cli): Update to 2.5.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
57273b958c
gnu: r-hardyweinberg: Update to 1.7.2. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
df5518d5fa
gnu: r-recipes: Update to 0.1.16. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.16.
[propagated-inputs]: Add r-ellipsis.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
cf712682cc
gnu: r-inum: Update to 1.0-4. 
* gnu/packages/cran.scm (r-inum): Update to 1.0-4.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
3008d477b5
gnu: r-pkgload: Update to 1.2.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.1.
[propagated-inputs]: Remove r-pkgbuild.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
b840705278
gnu: r-ape: Update to 5.5. 
* gnu/packages/cran.scm (r-ape): Update to 5.5.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
c6c214e3a3
gnu: r-haven: Update to 2.4.1. 
* gnu/packages/cran.scm (r-haven): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
f8203363a7
gnu: r-jquerylib: Update to 0.1.4. 
* gnu/packages/cran.scm (r-jquerylib): Update to 0.1.4.
[source]: Update snippet.
[arguments]: Update build phase "process-javascript".
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
7e3542600d
gnu: r-curl: Update to 4.3.1. 
* gnu/packages/cran.scm (r-curl): Update to 4.3.1.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
9afef02ebd
gnu: r-servr: Update to 0.22. 
* gnu/packages/cran.scm (r-servr): Update to 0.22.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
912a8a2ece
gnu: r-httpuv: Update to 1.6.0. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.0.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
2e59bab732
gnu: r-callr: Update to 3.7.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.7.0.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
2a5c02e172
gnu: r-tidyverse: Update to 1.3.1. 
* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.1.
[propagated-inputs]: Add r-dtplyr, r-googledrive, and r-googlesheets4.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
9aa1bde3b1
gnu: r-shadowtext: Update to 0.0.8. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.0.8.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
b9c5f17d23
gnu: r-mboost: Update to 2.9-5. 
* gnu/packages/cran.scm (r-mboost): Update to 2.9-5.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
a297fc6f74
gnu: r-ellipsis: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.2.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
e68e3f68a5
gnu: r-v8: Update to 3.4.2. 
* gnu/packages/cran.scm (r-v8): Update to 3.4.2.
[inputs]: Add zlib.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
14356d23be
gnu: r-brio: Update to 1.1.2. 
* gnu/packages/cran.scm (r-brio): Update to 1.1.2.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
6c07e74106
gnu: Add r-curry. 
* gnu/packages/cran.scm (r-curry): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
946f1608ae
gnu: Add r-googlesheets4. 
* gnu/packages/cran.scm (r-googlesheets4): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
4c2826df65
gnu: Add r-ids. 
* gnu/packages/cran.scm (r-ids): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
11108a9ab4
gnu: Add r-googledrive. 
* gnu/packages/cran.scm (r-googledrive): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
fadf5765c1
gnu: Add r-dtplyr. 
* gnu/packages/cran.scm (r-dtplyr): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
8a3766e1d3
gnu: Add r-conflicted. 
* gnu/packages/cran.scm (r-conflicted): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
aa9a94bba9
gnu: r-abn: Update to 2.5-0. 
* gnu/packages/cran.scm (r-abn): Move from here...
* gnu/packages/bioconductor.scm (r-abn): ...to here; update to 2.5-0.
[propagated-inputs]: Add r-rgraphviz.
 2021-05-04 07:27:43 +02:00
Michael Rohleder
d260bd51b5
gnu: emacs-yasnippet-snippets: Update to 0.24. 
* gnu/packages/emacs-xyz.scm (emacs-yasnippet-snippets): Update to 0.24.
[propagated-inputs]: Remove emacs-s.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-04 01:05:23 +02:00
Michael Rohleder
8a934d856f
gnu: emacs-rg: Update to 2.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-rg): Update to 2.0.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-04 01:03:58 +02:00
Xinglu Chen
3f90245d91
gnu: emacs-org-roam: Update to 1.2.4. 
* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 1.2.4.
[native-inputs]: Add texinfo.
[arguments]: Install image and Texinfo documentation.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-04 01:02:32 +02:00
Michael Rohleder
1d5560494b
gnu: chess: Fix paths in installed shell scripts. 
* gnu/packages/games.scm (chess)[arguments]: Add a 'fix-shell-scripts phase.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-04 00:59:40 +02:00
nixo
cc7c1f904e
gnu: Add julia-gumbo. 
* gnu/packages/julia-xyz.scm (julia-gumbo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 23:10:02 +02:00
nixo
74a7bb81f9
gnu: Add julia-gumbo-jll. 
* gnu/packages/julia-xyz.scm (julia-gumbo-jll): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 23:10:02 +02:00
nixo
64c1c49787
gnu: Add julia-abstracttrees. 
* gnu/packages/julia-xyz.scm (julia-abstracttrees): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 23:10:02 +02:00
François J
cd95cb287e
gnu: Add git-filter-repo. 
* gnu/packages/version-control.scm (git-filter-repo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 23:10:01 +02:00
François J
817f40d0ac
gnu: git: add a comment on why we don't build manpages 
* gnu/packages/version-control.scm (git)[native-inputs]:
    add back comment skipped by commit
    d1cada0450

Signed-off-by: François J. <francois-oss@avalenn.eu>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 23:10:01 +02:00
Tobias Geerinckx-Rice
71a4e26093
gnu: python-asdf: Update to 2.7.4. 
* gnu/packages/astronomy.scm (python-asdf): Update to 2.7.4.
 2021-05-03 22:27:30 +02:00
Tobias Geerinckx-Rice
6332ad5470
gnu: dico: Omit static libraries. 
* gnu/packages/dico.scm (dico)[arguments]: Add ‘--disable-static’ to
the #:configure-flags.
 2021-05-03 22:27:30 +02:00
Tobias Geerinckx-Rice
dbfe885e11
gnu: dico: Update to 2.11. 
* gnu/packages/dico.scm (dico): Update to 2.11.
 2021-05-03 22:27:30 +02:00
Tobias Geerinckx-Rice
6e43922f35
gnu: oath-toolkit: Update to 2.6.7. 
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.7.
 2021-05-03 22:23:59 +02:00
Michael Rohleder
2c09755a7a
gnu: vcsh: Update to 1.20190621. 
* gnu/packages/version-control.scm (vcsh): Update to 1.20190621.
[arguments]: Add an 'install-bash-completion phase.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-05-03 22:23:59 +02:00
raingloom
9ffa81fe64
gnu: blender: Update to 2.92.0. 
* gnu/packages/graphics.scm (blender): Update to 2.92.0.
[arguments]: Set the NumPy header include path in #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-05-03 13:04:55 -04:00
Xinglu Chen
88156c603a
gnu: public-inbox: Update to 1.6.1. 
* gnu/packages/mail.scm (public-inbox)[version]: Update to 1.6.1.
[inputs]: Add optional dependencies.  ‘perl-filesys-notify-simple’ has been
superseded by ‘perl-linux-inotify2’ by upstream.
[synopsis]: Capitalize “git”.
[description]: Likewise.  Mention IMAP support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:50 +02:00
Xinglu Chen
66f309a553
gnu: Add perl-linux-inotify2. 
* gnu/packages/perl.scm (perl-linux-inotify2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:50 +02:00
David Pflug
319e0e0aeb
gnu: odamex: Update to 0.9.0. 
* gnu/packages/games.scm (odamex): Update to 0.9.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:50 +02:00
Konrad Hinsen
36252dff9b
gnu: octave, octave-cli: Explain difference. 
* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:49 +02:00
Michael Rohleder
62b4cc14f8
gnu: chessx: Disable online version check by default. 
* gnu/packages/games.scm (chessx)[arguments]: Add phase to disable
the online version check by default.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:49 +02:00
Xinglu Chen
8e637fb548
gnu: git-modes: Update to 1.3.0. 
* gnu/packages/emacs-xyz.scm (git-modes): Update to 1.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:49 +02:00
Michael Rohleder
fa7dc25c2f
gnu: pioneers: Patch path to beep. 
Fixes <https://issues.guix.gnu.org/47131>

* gnu/packages/games.scm (pioneers): Patch path to beep.
[inputs]: Add beep.
[arguments]: Add phase patch-beep-path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:49 +02:00
Michael Rohleder
55b6e1a7ad
gnu: xboard: Patch path to aplay. 
Fixes <http://issues.guix.gnu.org/47195>.

* gnu/packages/games.scm (xboard): Patch path to aplay.
[inputs]: Add alsa-utils.
[arguments]: Add phase patch-aplay-path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-03 18:26:49 +02:00
Leo Prikler
d94e9cb774
gnu: guile-wisp: Update to 1.0.5. 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 1.0.5.
[license]: Add license:expat and clarify conditions.
 2021-05-03 18:04:23 +02:00
Efraim Flashner
591b0c758d
gnu: perl-image-exiftool: Update to 12.16. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 12.16.
 2021-05-03 16:40:32 +03:00
Ricardo Wurmus
eb930bedf4
gnu: Add texlive-default-updmap.cfg. 
* gnu/packages/tex.scm (texlive-default-updmap.cfg): New variable.
 2021-05-03 15:36:14 +02:00
Ricardo Wurmus
3d8a48f893
gnu: Add texlive-babel-swedish. 
* gnu/packages/tex.scm (texlive-babel-swedish): New variable.

Co-authored-by: Rovanion Luckey <rovanion.luckey@gmail.com>
 2021-05-03 15:36:14 +02:00
Ricardo Wurmus
04cbef14ff
gnu: Add texlive-pagenote. 
* gnu/packages/tex.scm (texlive-pagenote): New variable.
 2021-05-03 15:36:13 +02:00
Ricardo Wurmus
5874f8a051
gnu: Add texlive-ifmtarg. 
* gnu/packages/tex.scm (texlive-ifmtarg): New variable.
 2021-05-03 15:36:13 +02:00
Ricardo Wurmus
a202baf8e9
gnu: Add texlive-morefloats. 
* gnu/packages/tex.scm (texlive-morefloats): New variable.
 2021-05-03 15:36:13 +02:00
Ricardo Wurmus
962be3af65
gnu: Add texlive-sectsty. 
* gnu/packages/tex.scm (texlive-sectsty): New variable.
 2021-05-03 15:36:13 +02:00
Tobias Geerinckx-Rice
f0eb053dac
gnu: stgit: Update to 1.1. 
* gnu/packages/version-control.scm (stgit): Update to 1.1.
 2021-05-03 01:30:10 +02:00
Tobias Geerinckx-Rice
1f448a8a91
gnu: faudio: Update to 21.05. 
* gnu/packages/audio.scm (faudio): Update to 21.05.
 2021-05-03 01:30:10 +02:00
Tobias Geerinckx-Rice
4344978af3
gnu: perl-net-dns: Update to 1.31. 
* gnu/packages/networking.scm (perl-net-dns): Update to 1.31.
 2021-05-03 01:30:10 +02:00
Tobias Geerinckx-Rice
8337fc96c8
gnu: perl-file-readbackwards: Update to 1.06. 
* gnu/packages/perl.scm (perl-file-readbackwards): Update to 1.06.
 2021-05-03 01:30:10 +02:00
Tobias Geerinckx-Rice
be38994982
gnu: glances: Update to 3.1.7. 
* gnu/packages/python-xyz.scm (glances): Update to 3.1.7.
 2021-05-03 01:30:10 +02:00
Leo Famulari
1fdaf46c1e
gnu: linux-libre 5.4: Update to 5.4.116. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.116.
(linux-libre-5.4-pristine-source): Update hash.
 2021-05-02 18:20:32 -04:00
Leo Famulari
dcf3cee477
gnu: linux-libre 5.10: Update to 5.10.34. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.34.
(linux-libre-5.10-pristine-source): Update hash.
 2021-05-02 18:20:32 -04:00
Leo Famulari
d27f072961
gnu: linux-libre: Update to 5.11.18. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.18.
(linux-libre-5.11-pristine-source): Update hash.
 2021-05-02 18:20:28 -04:00
Tobias Geerinckx-Rice
bf5374f493
gnu: global: Update to 6.6.6. 
* gnu/packages/code.scm (global): Update to 6.6.6.
 2021-05-02 23:52:12 +02:00
Tobias Geerinckx-Rice
42e5491797
gnu: lldpd: Update to 1.0.11. 
* gnu/packages/networking.scm (lldpd): Update to 1.0.11.
 2021-05-02 23:49:08 +02:00
Tobias Geerinckx-Rice
aa74d37b6f
gnu: cloc: Update to 1.90. 
* gnu/packages/code.scm (cloc): Update to 1.90.
 2021-05-02 23:49:08 +02:00
Tobias Geerinckx-Rice
42adc2142a
gnu: bpytop: Update to 1.0.65. 
* gnu/packages/admin.scm (bpytop): Update to 1.0.65.
 2021-05-02 23:49:08 +02:00
Tobias Geerinckx-Rice
9a34b56f5d
gnu: kitty: Update to 0.20.2. 
* gnu/packages/terminals.scm (kitty): Update to 0.20.2.
 2021-05-02 23:49:08 +02:00
Tobias Geerinckx-Rice
065d2cd6ce
gnu: kexec-tools: Update to 2.0.22. 
* gnu/packages/linux.scm (kexec-tools): Update to 2.0.22.
 2021-05-02 19:03:47 +02:00
Mathieu Othacehe
2710df38b0
gnu: gupnp: Move gsettings-desktop-schemas to propagated-inputs. 
This fixes the following test failure:

Bail out! GLib-GIO-FATAL-ERROR: Settings schema 'org.gnome.system.proxy' is not installed
--- stderr ---

(/tmp/guix-build-gupnp-1.2.4.drv-0/build/tests/gtest/test-context:599):
GLib-GIO-ERROR **: 15:37:55.097: Settings schema 'org.gnome.system.proxy' is
not installed

* gnu/packages/gnome.scm (gupnp)[inputs]: Move gsettings-desktop-schemas to ...
[propagated-inputs]: ... here.
 2021-05-02 17:44:37 +02:00
Mathieu Othacehe
83d21785a9
gnu: cuirass: Update to 1.0.0-17.31fd4d4. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-17.31fd4d4.
[inputs]: Switch to guile-squee-dev.
 2021-05-02 17:29:46 +02:00
Mathieu Othacehe
744b07bdbf
gnu: Add guile-squee-dev. 
* gnu/packages/ci.scm (guile-squee-dev): New variable.
 2021-05-02 17:29:46 +02:00
Raghav Gururajan
061823da03
gnu: gupnp: Add gsettings-desktop-schemas for tests. 
This fixes the fatal error "Settings schema 'org.gnome.system.proxy' is not
installed", which causes build to fail.

* gnu/packages/gnome.scm (gupnp)[native-inputs]: Add gsettings-desktop-schemas.
 2021-05-02 08:59:31 -04:00
Raghav Gururajan
49d8f954e6
gnu: Add tgcli. 
* gnu/packages/telegram.scm (tgcli): New variable.
 2021-05-02 07:45:27 -04:00
Raghav Gururajan
255ff5ee28
gnu: Add python-mkdocs-material. 
* gnu/packages/python-xyz.scm (python-mkdocs-material): New variable.
 2021-05-02 07:45:27 -04:00
Raghav Gururajan
5b8e9eec08
gnu: Add python-pymdown-extensions. 
* gnu/packages/python-xyz.scm (python-pymdown-extensions): New variable.
 2021-05-02 07:45:27 -04:00
Raghav Gururajan
ad8ee53cb1
gnu: Add python-mkdocs. 
* gnu/packages/python-xyz.scm (python-mkdocs): New variable.
 2021-05-02 07:45:27 -04:00
Raghav Gururajan
caf84530e0
gnu: Add python-lunr. 
* gnu/packages/python-xyz.scm (python-lunr): New variable.
 2021-05-02 07:45:27 -04:00
Raghav Gururajan
edc946dde3
gnu: Add python-nltk@3.4. 
* gnu/packages/python-xyz.scm (python-nltk-3.4): New variable.
 2021-05-02 07:45:26 -04:00
Raghav Gururajan
e0f74524a1
gnu: python-nltk: Update to 3.6.2. 
This version is only available in zip format.

* gnu/packages/python-xyz.scm (python-nltk)[version]: Update to 3.6.2.
[uri]: Use zip extension.
[native-inputs]: Add unzip.
 2021-05-02 07:45:26 -04:00
Raghav Gururajan
6d7e1bdb03
gnu: Add python-pytest-click. 
* gnu/packages/python-check.scm (python-pytest-click): New variable.
 2021-05-02 07:45:26 -04:00
Raghav Gururajan
12ca316b83
gnu: Add python-yaspin. 
* gnu/packages/python-xyz.scm (python-yaspin): New variable.
 2021-05-02 07:45:26 -04:00
Raghav Gururajan
71005247cd
gnu: Add python-colorful. 
* gnu/packages/python-xyz.scm (python-colorful): New variable.
 2021-05-02 07:45:26 -04:00
Tobias Geerinckx-Rice
1b792e8b52
gnu: libostree: Update to 2021.2. 
* gnu/packages/package-management.scm (libostree): Update to 2021.2.
 2021-05-02 03:00:05 +02:00
Tobias Geerinckx-Rice
0cf79dd998
gnu: nim: Update to 1.4.6. 
* gnu/packages/nim.scm (nim): Update to 1.4.6.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
f1ecda50de
gnu: openmpi: Update to 4.1.1. 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.1.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
42658a67b7
gnu: libxdg-basedir: Omit static library. 
* gnu/packages/freedesktop.scm (libxdg-basedir)[arguments]:
Add ‘--disable-static’ to #:configure-flags.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
e3da51285a
gnu: libxdg-basedir: Update to 1.2.3. 
* gnu/packages/freedesktop.scm (libxdg-basedir): Update to 1.2.3.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
efd5c3b7c3
gnu: gajim: Update to 1.3.2. 
* gnu/packages/messaging.scm (gajim): Update to 1.3.2.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
145cffe103
gnu: dante: Update to 1.4.3. 
* gnu/packages/networking.scm (dante): Update to 1.4.3.
 2021-05-02 03:00:04 +02:00
Tobias Geerinckx-Rice
c6e9efd62d
gnu: pidgin: Update to 2.14.4. 
* gnu/packages/messaging.scm (pidgin): Update to 2.14.4.
[arguments]: Add now-required ‘--disable-gevolution’ configure flag.
Remove obsoleted 'eat-leftovers phase.
 2021-05-02 03:00:04 +02:00
Maxime Devos
9c44af6bd6
gnu: Replace hard-coded "CC=gcc" with CC-FOR-TARGET calls. 
* gnu/packages/admin.scm (cbatticon)[arguments]<#:make-flags>: Use
CC-FOR-TARGET.
* gnu/packages/assembly.scm (dev86)[arguments]<#:make-flags>: Likewise.
* gnu/packages/cdrom.scm (cd-discid)[arguments]<#:make-flags>: Likewise.
* gnu/packages/crypto.scm (signify, keyutils, ssss, libscrypt, enchive)
[arguments]<#:make-flags>: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-emacsql, emacs-telega)[arguments]
<#:phases>: Likewise.
* gnu/packages/gnupg.scm (pgpdump)[arguments]<#:make-flags>: Likewise.
* gnu/packages/image-viewers.scm (feh, imv)[arguments]<#:make-flags>:
Likewise.
* gnu/packages/image.scm (libjxr, giflib, freeimage)[arguments]
<#:make-flags>: Likewise.
* gnu/packages/irc.scm (ii, sic)[arguments]<#:make-flags>: Likewise.
* gnu/packages/lua.scm (make-lua-expat, make-lua-ossl, make-lua-sec)
(make-lua-cqueues, make-lua-lgi, lua-resty-signal)[arguments]
<#:make-flags>: Likewise.
* gnu/packages/networking.scm (httping, pixiewps, sslh, nethogs, spiped)
(can-utils, hcxtools, batctl)[arguments]<#:make-flags>: Likewise.
* gnu/packages/pdf.scm (fbida)[arguments]<#:make-flags>: Likewise.
* gnu/packages/ssh.scm (endlessh)[arguments]<#:make-flags>: Likewise.
* gnu/packages/toys.scm (nyancat)[arguments]<#:make-flags>: Likewise.
* gnu/packages/upnp.scm (miniupnpc)[arguments]<#:make-flags>: Likewise.
* gnu/packages/xdisorg.scm (bemenu, xbanish, sxhkd, xcape, xssproxy)
(xrandr-invert-colors, hsetroot, xsettingsd)[arguments]<#:make-flags>:
Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-05-02 03:00:03 +02:00
Vagrant Cascadian
eb305784bf
gnu: u-boot-pinebook-pro-rk3399: Update to version 2021.07-rc1. 
Version 2021.07-rc1 supports video output on the eDP panel.

* gnu/packages/bootloaders.scm (u-boot-2021.07): New variable.
  (u-boot-pinebook-pro-rk3399)[source, version]: Use u-boot-2021.07.
 2021-05-01 14:13:50 -07:00
Vagrant Cascadian
3a851d4557
gnu: u-boot: Patch to fix boot regressions for some platforms. 
The previous workaround stopped the preboot phase from loading USB
support, which makes it impossible to use a USB keyboard to select a
generation from the boot menu without using a serial console.

* gnu/packages/patches/u-boot-rockchip-inno-usb.patch: New File.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/bootloaders.scm (%u-boot-rockchip-inno-usb-patch): New variable.
  (u-boot)[source]: Add patch.
  (u-boot-rockpro64-rk3399, u-boot-pinebook-pro-rk3399): Remove obsolete phase.
 2021-05-01 14:12:08 -07:00
Tobias Geerinckx-Rice
10ecae4503
gnu: libglvnd: Update to 1.3.3. 
* gnu/packages/gl.scm (libglvnd): Update to 1.3.3.
 2021-05-01 21:11:49 +02:00
Tobias Geerinckx-Rice
d9d1efe971
gnu: retroarch: Update to 1.9.2. 
* gnu/packages/emulators.scm (retroarch): Update to 1.9.2.
[arguments]: Remove obsolete ‘--disable-git_version’ configure flag.
 2021-05-01 21:11:49 +02:00
Tobias Geerinckx-Rice
fd02abd1df
gnu: gnome-autoar: Update to 0.3.2. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.2.
 2021-05-01 21:11:49 +02:00
Tobias Geerinckx-Rice
b2c62c6f8b
gnu: duplicity: Update to 0.8.19. 
* gnu/packages/backup.scm (duplicity): Update to 0.8.19.
[arguments]: Set TMPDIR.  Rename 'check-setup to 'set-up-tests.
 2021-05-01 21:11:48 +02:00
Tobias Geerinckx-Rice
0e801d353e
gnu: benchmark: Update to 1.5.3. 
* gnu/packages/benchmark.scm (benchmark): Update to 1.5.3.
 2021-05-01 21:11:48 +02:00
Leo Prikler
90b4890c63
gnu: appstream-glib: Add gsettings-desktop-schemas for tests. 
This fixes the fatal error "Settings schema 'org.gnome.system.proxy' is not
installed", which causes builds to fail.

* gnu/packages/glib.scm (appstream-glib)[native-inputs]: Add
gsettings-desktop-schemas.
 2021-05-01 20:57:01 +02:00
Brendan Tildesley
ce5026b9f4
gnu: xfce4-settings: Add gsettings-desktop-schemas. 
* gnu/packages/xfce.scm (xfce4-settings):[propagated-inputs]: Add
gsettings-desktop-schemas. This makes it appear in the system profile
via the xfce service. This fixes a bug where changing icon theme causes
xfce4-appearance-settings to crash with the error:

GLib-GIO-ERROR **: 15:41:45.828: Settings schema 'org.gnome.desktop.interface' is not installed
Trace/breakpoint trap

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-01 17:41:09 +02:00
Ludovic Courtès
78789cb6e2
gnu: openjdk: Disallow references to the JDK used for build. 
This ensures JDKs don't unintentionally keep references to the one used
to build them, as reported at <https://issues.guix.gnu.org/31719#7> and
fixed by 97a43db8b4.

* gnu/packages/java.scm (icedtea-8)[arguments]: Add #:disallowed-references.
(openjdk9)[arguments]: Likewise.
(openjdk10)[arguments]: Likewise.
(openjdk11)[arguments]: Likewise.
 2021-05-01 17:12:28 +02:00
Ludovic Courtès
668384d160
gnu: openjdk: Avoid non-top-level 'use-modules'. 
* gnu/packages/java.scm (icedtea-8, openjdk9, openjdk11)[arguments]:
Replace non-top-level 'use-modules' by '@'.
 2021-05-01 17:12:24 +02:00
Carlo Zancanaro
522a48a228
gnu: openjdk: Fix library substitution when libraries aren't found. 
* gnu/packages/java.scm (icedtea-8, openjdk9, openjdk11)[arguments]:
Change 'find-library' to always return a string.  Change 'find-library'
callers to use 'string-append' rather than 'format'.  Starting from
97a43db8b4, 'find-library' could return #f
and JNI substitutions would emit a literal "#f".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-01 17:12:21 +02:00
Carlo Zancanaro
92b02d0c18
gnu: openjdk: Clean up runtime dependencies between Java versions. 
* gnu/packages/java.scm (icedtea-8, openjdk9, openjdk11): Do not consider
icedtea/openjdk input paths when rewriting JNI libraries.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2021-05-01 17:12:15 +02:00
Leo Prikler
a5e827a3ea
gnu: emacs-julia-snail: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-julia-snail)[arguments]: Drop #:phases.
Use #:include to add julia sources.
 2021-05-01 15:56:43 +02:00
Leo Prikler
0bb41f6db6
gnu: emacs-haskell-mode: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode)[#:phases]<install>: Install
to elpa-directory.
 2021-05-01 15:56:43 +02:00
Leo Prikler
3c501881c1
gnu: emacs-wget: Port to emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-wget)[build-system]: Use
emacs-build-system.
[arguments]: Drop #:modules and #:imported-modules.
Adjust #:phases accordingly.
 2021-05-01 15:56:43 +02:00
Leo Prikler
0912a64ec0
gnu: emacs-w3m: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-w3m)[#:configure-flags]: Use
elpa-directory to determine lispdir.
[#:phases]<install>: Likewise.
 2021-05-01 15:56:42 +02:00
Leo Prikler
89c0505e90
gnu: emacs-dvc: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-dvc)[#:configure-flags]: Use elpa-directory
for lispdir.
 2021-05-01 15:56:42 +02:00
Leo Prikler
47bd851d93
gnu: geiser-gauche: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (geiser-gauche)[arguments]: Use #:include rather
than #:phases to add geiser-gauche.scm.
 2021-05-01 15:56:42 +02:00
Morgan Smith
d47d50d5a4
gnu: guile-studio: Add missing input. 
* gnu/packages/guile-xyz.scm (guile-studio)[inputs]:
Add emacs-geiser-guile.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:42 +02:00
Morgan Smith
0bc6708f68
gnu: emacs-flycheck-guile: Add missing input. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-guile)[propagated-inputs]:
Add emacs-geiser-guile.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:42 +02:00
Morgan Smith
57681f1640
gnu: emacs-guix: Update to 0.5.2-4.8ce6d21. 
* gnu/packages/emacs-xyz.scm (emacs-guix): Update to 0.5.2-4.8ce6d21.
[source]: Update upstream URL.
[propagated-inputs]: Add emacs-geiser-guile.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:41 +02:00
Morgan Smith
7141b010ee
gnu: Add emacs-geiser-guile. 
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:41 +02:00
Morgan Smith
c1a78a1081
gnu: emacs-geiser: Update to 0.13. 
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.13.
[source]: Change upstream URL.
[build-system]: Change to emacs-build-system.
[arguments]: Adjust accordingly.
[native-inputs]: Remove emacs, autoconf, and automake.
[description]: State that other packages are needed for geiser to be useful.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:41 +02:00
Leo Prikler
9c5f9f067e
gnu: emacs-realgud: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-realgud)[fix-autogen-script]: Move after
‘expand-load-path’.
 2021-05-01 15:56:41 +02:00
Leo Prikler
9184d0178d
gnu: emacs-pyim: Update to 3.6. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.6.
 2021-05-01 15:56:41 +02:00
Leo Prikler
b8c9d9dee3
gnu: notmuch: Adjust to changes in emacs-build-system. 
* gnu/packages/mail.scm (notmuch)[configure]: Use elpa-directory.
 2021-05-01 15:56:40 +02:00
Leo Prikler
cd35b94e30
gnu: emacs-vterm: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-vterm)[substitute-vterm-module-path]:
Move after ‘unpack’.
 2021-05-01 15:56:40 +02:00
Leo Prikler
8e8a3b0eef
gnu: emacs-scel: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-scel)[#:phases]<configure>: Use
elpa-directory.
<add-el-dir-to-emacs-load-path>: Adjust location.
 2021-05-01 15:56:40 +02:00
Leo Prikler
c409cea2d8
gnu: emacs-edbi: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-edbi)[patch-path]: Execute after unpack.
[wrap-edbi-bridge]: New phase (after wrap).  Find edbi-bridge in elpa-directory.
 2021-05-01 15:56:40 +02:00
Leo Prikler
c4fac5dd7f
gnu: emacs-org-contrib: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-org-contrib)[delete-org-files]: Excurse
into elpa-directory.
 2021-05-01 15:56:40 +02:00
Leo Prikler
08d6f7fad9
gnu: emacs-sly-stepper: Remove generated sources. 
* gnu/packages/emacs-xyz.scm (sly-stepper)[source]: Add snippet to remove
autoloads.
[#:phases]: Do not delete ‘make-autoloads’ or ‘enable-autoloads-compilation’.
 2021-05-01 15:56:39 +02:00
Leo Prikler
2c010c1ba0
gnu: emacs-sly-stepper: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-sly-stepper)[#:phases]:
<add-contrib-to-emacs-load-path>: Rename to...
<expand-sly-contrib>: ... this.  Use find-files to find contrib directory.
<install>: Find slynk-stepper.lisp in elpa-directory.
 2021-05-01 15:56:39 +02:00
Leo Prikler
93d0124a09
gnu: emacs-shroud: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-shroud)[#:phases]: Add ‘expand-load-path’.
[#:configure-flags]: Use elpa-directory for lispdir.
 2021-05-01 15:56:39 +02:00
Xinglu Chen
710cdcc9ce
gnu: emacs-pdf-tools: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[#:phases]: Rename
'emacs-add-source-to-load-path' to 'emacs-expand-load-path'.
Use expand-load-path, which replaces add-source-to-load-path.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-01 15:56:39 +02:00
Leo Prikler
d34e6dbc4b
gnu: emacs-ert-runner: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-ert-runner)[install-executable]: Use
elpa-directory for the value of ERT_RUNNER.
 2021-05-01 15:56:39 +02:00
Leo Prikler
d303a0bc2f
gnu: emacs-howm: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-howm)[#:configure-flags]: Install to
elpa-directory.
 2021-05-01 15:56:38 +02:00
Leo Prikler
710c6f49db
gnu: emacs-emacsql: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-emacsql)[#:phases]: Use standard build and
install phases.
[build-emacsql-sqlite]: Use cc-for-target.
 2021-05-01 15:56:38 +02:00
Leo Prikler
7549981cec
gnu: Add emacs-telega-contrib. 
* gnu/packages/emacs-xyz.scm (emacs-telega-contrib): New variable.
 2021-05-01 15:56:38 +02:00
Leo Prikler
132560821c
gnu: emacs-telega: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-telega.scm (emacs-telega)[#:phases]: Reorder.
<telega-paths-patch>: Rename to...
<patch-sources>: ... this.  Also don't patch paths to subdirs.
Remove the snippet, that would push contrib to the load path.
<server-suite-patch>: Rename to...
<patch-test-suite>: ... this.
<emacs-install>: Also install etc.
<emacs-bytecomp-contrib, telega-install-contrib, telega-install-data>: Removed
phases.
 2021-05-01 15:56:38 +02:00
Leo Prikler
f974455708
gnu: emacs-guix: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-guix)[#:phases]: Add expand-load-path.
[#:configure-flags]: Install to elpa-directory.
 2021-05-01 15:56:38 +02:00
Leo Prikler
89718b95a0
gnu: emacs-libgit: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-libgit)[set-libgit--module-file]: Use
elpa-directory for libgit--module-file path.
 2021-05-01 15:56:37 +02:00
Leo Prikler
d13b46fae4
gnu: emacs: Add coreutils and gzip to PATH. 
Some parts of Emacs (dired, compression handling, Tramp) shell out to commands
and patching them all is a daunting task.  Also, w.r.t. Tramp, we need those
commands to be portable across multiple machines, which need not only be Guix
machines (and even if they are, store items can be different).  This patch
ensures a ‘sane’ setup FSVO ‘sane’.

* gnu/packages/emacs.scm (emacs)[wrap-load-path]: Rename to...
[wrap-emacs-paths] ... this.  Also patch PATH.
 2021-05-01 15:56:37 +02:00
Leo Prikler
307a2d2e2a
gnu: emacs: Wrap EMACSLOADPATH. 
With this, the search path specification of EMACSLOADPATH does no longer
depend on the version of Emacs, which should make upgrading major versions
less painful.  See also:
- <https://bugs.gnu.org/43627>
- <https://bugs.gnu.org/47458>

* gnu/packages/emacs.scm (emacs)[#:phases]: Add ‘wrap-load-path’.
[native-search-path]<EMACSLOADPATH>: Do not search for builtin libraries.
(emacs-next)[native-search-path]: Inherit from emacs.
 2021-05-01 15:56:37 +02:00
Pierre Neidhardt
c04dfb39f6
gnu: sbcl: Update to 2.1.4. 
* gnu/packages/lisp.scm (sbcl): Update to 2.1.4.
 2021-05-01 13:53:09 +02:00
Tobias Geerinckx-Rice
1ba3df1872
gnu: soci: Update to 4.0.2. 
* gnu/packages/databases.scm (soci): Update to 4.0.2.
 2021-05-01 11:29:12 +02:00
Tobias Geerinckx-Rice
927fcf1205
gnu: qutebrowser: Update to 2.2.1. 
* gnu/packages/web-browsers.scm (qutebrowser): Update to 2.2.1.
 2021-05-01 11:29:12 +02:00
Tobias Geerinckx-Rice
2a75ec2863
gnu: httpd: Update to 2.4.47. 
* gnu/packages/web.scm (httpd): Update to 2.4.47.
 2021-05-01 11:29:11 +02:00
Tobias Geerinckx-Rice
9b74cfd161
gnu: php: Update to 7.4.18. 
* gnu/packages/php.scm (php): Update to 7.4.18.
[arguments]: Delete yet another failing test (proc_nice_basic).
 2021-05-01 11:29:11 +02:00
Tobias Geerinckx-Rice
51eb82aad9
gnu: khal: Update to 0.10.3. 
* gnu/packages/calendar.scm (khal): Update to 0.10.3.
 2021-05-01 11:29:11 +02:00
Tobias Geerinckx-Rice
122fd940da
gnu: diffoscope: Update to 173. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 173.
 2021-05-01 11:29:11 +02:00
Tobias Geerinckx-Rice
81450d6972
gnu: mailcap: Update to 2.1.53. 
* gnu/packages/mail.scm (mailcap): Update to 2.1.53.
 2021-05-01 11:29:10 +02:00
Tobias Geerinckx-Rice
9fdee1e947
gnu: srt: Update to 1.4.3. 
* gnu/packages/networking.scm (srt): Update to 1.4.3.
 2021-05-01 11:29:10 +02:00
Tobias Geerinckx-Rice
ad35e2f8ec
gnu: ustr: Omit static libraries. 
* gnu/packages/textutils.scm (ustr)[arguments]: Add a new
'omit-static-libraries phase.
 2021-05-01 11:29:10 +02:00
Nicolas Goaziou
73b6660cd1
gnu: emacs-marginalia: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.5.
 2021-04-30 21:11:57 +02:00
Nicolas Goaziou
fc2df097f3
gnu: emacs-consult: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.7.
 2021-04-30 21:11:27 +02:00
Oleg Pykhalov
3036bbe1c8
gnu: emacs-which-key: Update to 3.5.2. 
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.2.
 2021-04-30 20:46:38 +03:00
Roel Janssen
f09e4dd8ea
gnu: Add pbgzip. 
* gnu/packages/bioinformatics.scm (pbgzip): New variable.
 2021-04-30 18:44:46 +02:00
Ludovic Courtès
5866fa558b
Merge branch 'wip-ungrafting' 2021-04-30 18:21:31 +02:00
Brendan Tildesley
ed9d890e0e
gnu: xfce4-settings: Add gsettings-desktop-schemas. 
* gnu/packages/xfce.scm (xfce4-settings):[propagated-inputs]: Add
gsettings-desktop-schemas. This makes it appear in the system profile
via the xfce service. This fixes a bug where changing icon theme causes
xfce4-appearance-settings to crash with the error:

GLib-GIO-ERROR **: 15:41:45.828: Settings schema 'org.gnome.desktop.interface' is not installed
Trace/breakpoint trap

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-30 17:37:45 +02:00
Xinglu Chen
953e7d84ce
gnu: emacs-xref: Fix ELPA URL. 
* gnu/packages/emacs-xyz.scm (emacs-xref)[source]: Use “.tar” instead of “.el”
in the URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-30 16:47:31 +02:00
Raghav Gururajan
ee86a035c7
gnu: libsoup: Update home-page. 
* gnu/packages/gnome.scm (libsoup)[home-page]: Modify.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-04-30 16:12:41 +02:00
Raghav Gururajan
2fd6484ad3
gnu: libsoup: Adjust inputs. 
* gnu/packages/gnome.scm (libsoup)[inputs]: Add samba and
move glib-networking to ...
[propagated-inputs]: ... here.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-04-30 16:12:41 +02:00
Nicolas Goaziou
d5fdd88739
gnu: emacs-xref: Update to 1.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.1.0.
 2021-04-30 16:01:55 +02:00
Nicolas Goaziou
d3bed700a2
gnu: emacs-tramp: Update to 2.5.0.4. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.4.
 2021-04-30 16:01:46 +02:00
Nicolas Goaziou
2130a43874
gnu: emacs-auctex: Update to 13.0.11. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.11.
 2021-04-30 16:01:39 +02:00
Nicolas Goaziou
5511a5b662
gnu: emacs-project: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.6.0.
 2021-04-30 16:01:30 +02:00
Sergiu Ivanov
847f523381
gnu: Add aspell-dict-ro. 
* gnu/packages/aspell.scm (aspell-dict-ro): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-04-30 12:51:40 +02:00
Sharlatan Hellseher
91ba42509e
gnu: Add cl-bknr-datastore. 
* gnu/packages/lisp-xyz.scm (cl-bknr-datastore, sbcl-bknr-datastore): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-04-30 09:42:07 +02:00
Sharlatan Hellseher
c72c3e50cd
gnu: Add cl-unit-test. 
* gnu/packages/lisp-xyz.scm (cl-unit-test, ecl-unit-test, sbcl-unit-test): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-04-30 09:16:22 +02:00
Maxim Cournoyer
9bf205e5a0
gnu: guix: Update to 6fd7f16. 2021-04-29 21:18:56 -04:00
Maxim Cournoyer
6fd7f161d7
gnu: guix: Update to 1.3.0rc1. 2021-04-29 17:38:02 -04:00
Efraim Flashner
131265ea3a
gnu: vim-fugitive: Update to 3.3. 
* gnu/packages/vim.scm (vim-fugitive): Update to 3.3.
 2021-04-29 23:22:48 +03:00
Efraim Flashner
59dbf6e190
gnu: vim-asyncrun: Update to 2.8.6. 
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.8.6.
 2021-04-29 23:19:48 +03:00
Oleg Pykhalov
ed1e011dd5
gnu: emacs-elfeed: Update to 3.4.1. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.4.1.
 2021-04-29 21:02:13 +03:00
Efraim Flashner
bdf9c7db6d
gnu: nano: Update to 5.7. 
* gnu/packages/nano.scm (nano): Update to 5.7.
 2021-04-29 20:53:13 +03:00
Andreas Enge
df0b723345
gnu: mpfrcx: Update to 0.6.1. 
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.1.
 2021-04-29 15:44:15 +02:00
Ludovic Courtès
2c11e7be74
Merge remote-tracking branch 'origin/master' into wip-ungrafting 2021-04-29 15:41:48 +02:00
Guillaume Le Vaillant
041d62f7cc
gnu: bigloo: Update to 4.3g. 
* gnu/packages/scheme.scm (bigloo): Update to 4.3g.
  [source]: Remove bundled libunistring and pcre.
  [arguments]: Add 'fix-gmp-detection' phase. Add options to 'configure' phase
  to throw an error when gmp is not found.
 2021-04-29 14:57:15 +02:00
Roel Janssen
7540f6915c
gnu: Update bedtools to 2.30.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.30.0,
  [inputs]: Use latest samtools.
 2021-04-29 12:14:06 +02:00
Roel Janssen
558d11c3a8
gnu: Update samtools to 1.12. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.12.
 2021-04-29 12:14:02 +02:00
Roel Janssen
b904bb89a0
gnu: Update bcftools to 1.12. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.12.
 2021-04-29 12:13:56 +02:00
Roel Janssen
241994230b
gnu: htslib: Update to 1.12. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.12.
 2021-04-29 12:13:46 +02:00
Mathieu Othacehe
a6a36059d5
gnu: kmscon: Fix layout setup. 
Kmscon may discover multiple inputs, corresponding to multiple devices. This
means that the uxkb_dev_keymap_update function may be called multiple times,
and the FIFO is registered on each input poll loop.

When a new layout is written on the FIFO by the installer, the first input
picking up the message, will apply the new layout. However, that input may not
be the input that the user is currently using.

To fix it, register the FIFO on the first input poll loop, but apply the new
layout on all the inputs in the uxkb_keymap_update_handler function.

* gnu/packages/patches/kmscon-runtime-keymap-switch.patch
(uxkb_keymap_update_handler): Apply the new layout to all the inputs.
(input_new_dev): Register the FIFO fd only on the first input poll loop.
 2021-04-29 12:12:13 +02:00
Mathieu Othacehe
68110f7288
gnu: kmscon: Fix layout setup. 
Kmscon may discover multiple inputs, corresponding to multiple devices. This
means that the uxkb_dev_keymap_update function may be called multiple times,
and the FIFO is registered on each input poll loop.

When a new layout is written on the FIFO by the installer, the first input
picking up the message, will apply the new layout. However, that input may not
be the input that the user is currently using.

To fix it, register the FIFO on the first input poll loop, but apply the new
layout on all the inputs in the uxkb_keymap_update_handler function.

* gnu/packages/patches/kmscon-runtime-keymap-switch.patch
(uxkb_keymap_update_handler): Apply the new layout to all the inputs.
(input_new_dev): Register the FIFO fd only on the first input poll loop.
 2021-04-29 12:06:07 +02:00
Ricardo Wurmus
74b3f2cbb1
gnu: Add r-qpcr. 
* gnu/packages/cran.scm (r-qpcr): New variable.
 2021-04-29 09:55:57 +02:00
Kyle Meyer
04ef4c7880
gnu: git-annex: Update to 8.20210428. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210428.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:17:23 +03:00
Ryan Prior
eed2c4843f
gnu: oil: Update to 0.8.10. 
* gnu/packages/shells.scm (oil): Update to 0.8.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:14:03 +03:00
BonfaceKilz
f2b2016bfd
gnu: Add python-hissp. 
* gnu/packages/python-xyz.scm (python-hissp): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:01:16 +03:00
Kei Kebreau
685e4733ad
gnu: xaos: Update to 4.2.1. 
* gnu/packages/maths.scm (xaos): Update to 4.2.1.
[arguments]: Patch call to "lrelease" in XaoS.pro.
 2021-04-29 00:44:03 -04:00
Vagrant Cascadian
d018a11ee0
gnu: linux-libre-arm64-generic@5.10: Add eDP panel, audio and battery 
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.10-source): Add pinebook pro lcd patch.
  (linux-libre-arm64-generic-5.10): Add audio and battery modules.
 2021-04-28 16:56:58 -07:00
Vagrant Cascadian
e7fbf10066
gnu: linux-libre-arm64-generic: Add eDP panel, battery and audio 
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro
  lcd patch.
  (linux-libre-arm64-generic): Enable audio and battery modules for
  Pinebook Pro.
* gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2021-04-28 16:56:35 -07:00
Xinglu Chen
0d570b6019
gnu: emacs-hyperbole: Install images and help files. 
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Include help file
and install images for the manual.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-29 00:29:41 +02:00
Xinglu Chen
43684b19da
gnu: emacs-corfu: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-29 00:25:29 +02:00
Leo Famulari
22b3dd559c
gnu: isc-dhcp: Update bundled BIND to 9.11.31 [security fixes]. 
Fixes CVE-2021-{25214,25215,25216].

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.31.
 2021-04-28 17:26:05 -04:00
Tobias Geerinckx-Rice
b95f422714
gnu: bind: Update to 9.16.15 [fixes CVE-2021-25214, CVE-2021-25215, CVE-2021-25216]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.15.
 2021-04-28 22:35:13 +02:00
Leo Famulari
958613f1af
gnu: linux-libre 4.4: Update to 4.4.268. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.268.
(linux-libre-4.4-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari
cdd22eacae
gnu: linux-libre 4.9: Update to 4.9.268. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.268.
(linux-libre-4.9-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari
a3535c4383
gnu: linux-libre 4.14: Update to 4.14.232. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.232.
(linux-libre-4.14-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari
75d8067779
gnu: linux-libre 4.19: Update to 4.19.189. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189.
(linux-libre-4.19-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari
3d1c37122e
gnu: linux-libre 5.4: Update to 5.4.115. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115.
(linux-libre-5.4-pristine-source): Update hash.
 2021-04-28 16:32:53 -04:00
Leo Famulari
4499655166
gnu: linux-libre 5.10: Update to 5.10.33. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.33.
(linux-libre-5.10-pristine-source): Update hash.
 2021-04-28 16:32:53 -04:00
Leo Famulari
82eb714cb3
gnu: linux-libre: Update to 5.11.17. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.17.
(linux-libre-5.11-pristine-source): Update hash.
 2021-04-28 16:32:47 -04:00
Ricardo Wurmus
e7707d5262
gnu: pigx-bsseq: Update to 0.1.3. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.3.
[inputs]: Add r-ggbio, r-matrixstats, and r-reshape2.
 2021-04-28 21:58:05 +02:00
Tobias Geerinckx-Rice
7f9888516f
gnu: ustr: Don't use vsnprintf. 
This follows up on 1059d1570b,
which caused new tests failures on non-cross builds.

* gnu/packages/textutils.scm (ustr)[arguments]: Return "0" for
./autoconf_vsnprintf.
 2021-04-28 21:41:20 +02:00
Nicolas Goaziou
bbdd43fd11
gnu: giac: Update to 1.7.0-3. 
* gnu/packages/algebra.scm (giac): Update to 1.7.0-3.
 2021-04-28 21:37:16 +02:00
Nicolas Goaziou
510fbf7f93
gnu: python-pikepdf: Update to 2.11.4. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.11.4.
 2021-04-28 21:30:39 +02:00
Nicolas Goaziou
00c06f3aae
gnu: emacs-auctex: Update to 13.0.10. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.10.
 2021-04-28 21:27:26 +02:00
Tobias Geerinckx-Rice
1059d1570b
gnu: ustr: Cross-compile. 
Also fix <http://issues.guix.gnu.org/48084>.

* gnu/packages/text-utils.scm (ustr)[arguments]: Use CC-FOR-TARGET.
Add a new 'fix-cross-compilation phase.
 2021-04-28 20:48:22 +02:00
Tobias Geerinckx-Rice
f3b2d6681c
gnu: less: Update to 581.2. 
* gnu/packages/less.scm (less): Update to 581.2.
 2021-04-28 19:11:14 +02:00
Tobias Geerinckx-Rice
a8dde2fd17
gnu: iproute2: Update to 5.12.0. 
* gnu/packages/linux.scm (iproute2): Update to 5.12.0.
 2021-04-28 19:11:13 +02:00
Tobias Geerinckx-Rice
9dbedb8bae
gnu: folly: Update to 2021.04.26.00. 
* gnu/packages/cpp.scm (folly): Update to 2021.04.26.00.
 2021-04-28 19:11:13 +02:00
Tobias Geerinckx-Rice
97d9814167
gnu: xsimd: Update to 7.5.0. 
* gnu/packages/cpp.scm (xsimd): Update to 7.5.0.
 2021-04-28 19:11:13 +02:00
Tobias Geerinckx-Rice
794bb59b19
gnu: fcitx-qt5: Update to 1.2.6. 
* gnu/packages/fcitx.scm (fcitx-qt5): Update to 1.2.6.
 2021-04-28 19:11:12 +02:00
Marius Bakke
8dcbd8a374
gnu: ungoogled-chromium: Update to 90.0.4430.93. 
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch,
gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90.
(debian-patch): Make REVISION optional, default to %DEBIAN-REVISION.
(%chromium-version): New variable.
(%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907.
(%debian-revision): Set to debian/90.0.4430.85-1.
(%debian-patches): Add more patches; update hashes.
(%ungoogled-origin): Update hash.
(%guix-patches): Remove obsolete patches.
(libvpx/chromium): Update to 1.9.0-147-g61edec1ef.
(ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last
component of %UNGOOGLED-REVISION, a 'git describe --long' style ID.
[arguments]: Add build_with_flite_lib in #:configure-flags.  Add openjpeg
substitution in #:phases.
 2021-04-28 17:59:32 +02:00
Marius Bakke
cc03603514
gnu: uBlock Origin: Update to 1.35.0. 
* gnu/packages/browser-extensions.scm (uassets): Update to edfb13aae.
(ublock-origin): Update to 1.35.0.
 2021-04-28 17:59:32 +02:00
Marius Bakke
8fa86141b7
gnu: LLVM, Clang: Add 12.0.0. 
* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12,
clang-toolchain-12): New variables.
(llvm-11): Inherit from LLVM-12.
 2021-04-28 17:59:32 +02:00
Ricardo Wurmus
01e33a031e
gnu: Add lofreq. 
* gnu/packages/bioinformatics.scm (lofreq): New variable.
 2021-04-28 17:41:47 +02:00
Ricardo Wurmus
f01b3cd063
gnu: kraken2: Replace references to rsync. 
* gnu/packages/bioinformatics.scm (kraken2)[inputs]: Add rsync.
[arguments]: Replace references to rsync; use WITH-DIRECTORY-EXCURSION to
avoid repeating "scripts".
 2021-04-28 14:50:50 +02:00
Efraim Flashner
f7ff886213
gnu: global: Fix cross compiling. 
Coreutils was removed during patch review erroneously.
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/code.scm (global)[inputs]: Add coreutils.
 2021-04-28 14:41:31 +03:00
luhui
93242b54e4
gnu: global: Fix globash. 
* gnu/packages/code.scm (global)[arguments]: Add 'fix-globash phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-28 12:25:09 +03:00
Ricardo Wurmus
5ea5ea6066
gnu: Add python-pyliftover. 
* gnu/packages/bioinformatics.scm (python-pyliftover): New variable.
 2021-04-28 10:52:12 +02:00
Efraim Flashner
562c3a4e12
gnu: keepassxc: Wrap binary with wrap-qt-program. 
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Import
qt-utils module. Replace custom 'wrap-bin phase with 'wrap-qt phase.
 2021-04-28 11:43:34 +03:00
Ricardo Wurmus
d027637026
gnu: slurm: Link plugins with libslurm. 
* gnu/packages/parallel.scm (slurm)[arguments]: Add phase
patch-plugin-linker-flags to link plugins with libslurm; run autoconf phase
after this new phase.
 2021-04-28 10:18:07 +02:00
Ricardo Wurmus
ffd5bc9600
gnu: krona-tools: Install download scripts. 
* gnu/packages/web.scm (krona-tools)[inputs]: Add curl and make.
[arguments]: Patch and install update scripts to /share.
 2021-04-28 10:18:07 +02:00
Ricardo Wurmus
fe28f395bc
gnu: krona-tools: Update to 2.8. 
* gnu/packages/web.scm (krona-tools): Update to 2.8.
 2021-04-28 10:18:07 +02:00
Leo Famulari
1f6854bd06
gnu: Add mmc-utils. 
* gnu/packages/disk.scm (mmc-utils): New variable.
 2021-04-28 00:01:17 -04:00
Efraim Flashner
1f5543e7ff
gnu: Add gdc-11. 
* gnu/packages/gcc.scm (gdc-11): New variable.
 2021-04-27 17:10:22 +03:00
Efraim Flashner
007ec66206
gnu: Add gcc-toolchain-11. 
* gnu/packages/gcc.scm (gcc-11): New variable.
* gnu/packages/commencement.scm (gcc-toolchain-11): New variable.
 2021-04-27 17:10:22 +03:00
Tobias Geerinckx-Rice
e97376c15f
gnu: lagrange: Update to 1.3.4. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.3.4.
 2021-04-27 15:59:05 +02:00
Tobias Geerinckx-Rice
19f67a9197
gnu: ugrep: Use GIT-FILE-NAME helper. 
* gnu/packages/search.scm (ugrep)[source]: Use GIT-FILE-NAME.
 2021-04-27 15:54:00 +02:00
Tobias Geerinckx-Rice
4206cf1fa8
gnu: ugrep: Update to 3.1.12. 
* gnu/packages/search.scm (ugrep): Update to 3.1.12.
 2021-04-27 15:54:00 +02:00
Efraim Flashner
f664c4234e
gnu: gcide: Update to 0.53. 
* gnu/packages/dictionaries.scm (gcide): Update to 0.53.
 2021-04-27 16:32:32 +03:00