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66175 Commits

Author SHA1 Message Date
Ricardo Wurmus
ce7b202f9b
gnu: Add perl-bio-db-hts. 
* gnu/packages/bioinformatics.scm (perl-bio-db-hts): New variable.
 2021-05-06 18:56:24 +02:00
Tobias Geerinckx-Rice
317da145c9
gnu: taisei: Update to 1.3.2. 
* gnu/packages/games.scm (taisei): Update to 1.3.2.
[inputs]: Add cglm.
 2021-05-06 16:47:24 +02:00
Tobias Geerinckx-Rice
72e2e8fa29
gnu: Add cglm. 
* gnu/packages/maths.scm (cglm): New public variable.
 2021-05-06 16:46:40 +02:00
Tobias Geerinckx-Rice
0e3931f027
gnu: epson-inkjet-printer-escpr: Update to 1.7.10. 
* gnu/packages/cups.scm (epson-inkjet-printer-escpr): Update to 1.7.10.
 2021-05-06 16:03:27 +02:00
Tobias Geerinckx-Rice
1ebbf76862
gnu: php: Update to 7.4.19. 
* gnu/packages/php.scm (php): Update to 7.4.19.
 2021-05-06 13:56:26 +02:00
Tobias Geerinckx-Rice
5cad926bb5
gnu: telegram-purple: Note support status. 
* gnu/packages/messaging.scm (telegram-purple)[description]: Set expectations.
 2021-05-06 13:56:26 +02:00
Tobias Geerinckx-Rice
c3ea5756e6
gnu: telegram-purple: Update to 1.4.7. 
* gnu/packages/messaging.scm (telegram-purple): Update to 1.4.7.
 2021-05-06 13:56:25 +02:00
Tobias Geerinckx-Rice
079ec3f3ee
gnu: nginx: Fix cross-compilation. 
* gnu/packages/web.scm (nginx)[arguments]: Use CC-FOR-TARGET.
 2021-05-06 13:56:25 +02:00
Tobias Geerinckx-Rice
e0e0178f8e
gnu: nginx: Build http_xslt_module. 
* gnu/packages/web.scm (nginx)[inputs]: Add libxml2 and libxslt.
[arguments]: Add "--with-http_xslt_module" to the configure flags.
Set up CFLAGS to find libxml2 headers.
 2021-05-06 13:56:25 +02:00
Pierre Neidhardt
39174fd7a7
gnu: nyxt: Update to 2-pre-release-7. 
* gnu/packages/web-browsers.scm (nyxt): Update to 2-pre-release-7.
[arguments]: Set GI_TYPELIB_PATH to the value in the build environment, not
just gsettings-desktop-schemas since we also need the typelibs of GTK, Pango,
etc.
[inputs]: Add sbcl-cl-gobject-introspection, gtk+, webkitgtk,
gobjectintrospection.  There are all needed for the new GI-based renderer.
 2021-05-06 13:43:05 +02:00
Pierre Neidhardt
69c749d2ee
gnu: sbcl-cl-webkit: Update to 20210504. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20210504.
 2021-05-06 13:43:05 +02:00
Efraim Flashner
2e4f61908b
gnu: translate-shell: Adjust to changes in emacs-build-system. 
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Replace
custom 'emacs-install phase with the 'install phase from the
emacs-build-system. Also add 'emacs-make-autoload and
'emacs-autoloads-completion phases from the emacs-build-system. Adjust
modules and imported modules accordingly.
 2021-05-06 14:27:55 +03:00
Tobias Geerinckx-Rice
ba9db4c886
gnu: knot-resolver: Update to 5.3.2. 
* gnu/packages/dns.scm (knot-resolver): Update to 5.3.2.
 2021-05-06 09:37:54 +02:00
Simon Josefsson via Guix-patches via
37fd82177e
gnu: oath-toolkit: Build libpskc and pskctool. 
* gnu/packages/authentication.scm (oath-toolkit)[arguments]:
Add "--enable-pskc" and "--with-xmlsec-crypto-engine=openssl"
to #:configure-flags.
[native-inputs]: Add libltdl.
[inputs]: Add openssl and xmlsec-openssl.
[description]: Document the two new features.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-05-06 09:37:34 +02:00
Alexey Abramov via Guix-patches via
2fd903c7de
gnu: rasdaemon: Use correct @acronym command arity. 
* gnu/packages/linux.scm (rasdaemon)[description]: Use @acronym with
1 comma only (@comma is not yet supported).

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-05-06 09:16:31 +02:00
Tobias Geerinckx-Rice
0b77d36ad0
gnu: filezilla: Update to 3.53.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.53.1.
 2021-05-06 00:40:33 +02:00
Tobias Geerinckx-Rice
16032f4e2d
gnu: libfilezilla: Update to 0.28.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.28.0.
[native-inputs]: Add gcc-8.
 2021-05-06 00:40:33 +02:00
Tobias Geerinckx-Rice
8bf7c0e6e6
gnu: mutt: Update to 2.0.7. 
* gnu/packages/mail.scm (mutt): Update to 2.0.7.
 2021-05-06 00:40:33 +02:00
Tobias Geerinckx-Rice
efe8dc71fe
gnu: loksh: Update to 6.9. 
* gnu/packages/shells.scm (loksh): Update to 6.9.
[source]: Check out recursively.
[build-systems]: Switch to Meson.
[inputs]: Remove libbsd.
[arguments]: Remove the old build system's #:make-flags and #:phases
customisation.
 2021-05-06 00:40:32 +02:00
Tobias Geerinckx-Rice
70f619d892
gnu: msmtp: Don't TP Debian's house. 
* gnu/packages/mail.scm (msmtp)[arguments]: Fix comment typo.
 2021-05-06 00:40:32 +02:00
Marius Bakke
2bb74d8a13
gnu: python-django: Disable django-admin wrapper. 
* gnu/packages/django.scm (python-django)[arguments]: Delete 'wrap' phase.
[native-inputs]: Move PYTHON-JINJA2 ...
[propagated-inputs]: ... here.  While at it, add a comment about which inputs
are optional and adjust order accordingly.
 2021-05-05 23:48:20 +02:00
Marius Bakke
249fb4a303
gnu: python-django: Update to 3.2.1. 
* gnu/packages/django.scm (python-django): Update to 3.2.1.
 2021-05-05 23:48:20 +02:00
Marius Bakke
e355222382
gnu: python-django: Support '--without-tests'. 
* gnu/packages/django.scm (python-django)[arguments]: Test for TESTS? in the
'check' phase.
 2021-05-05 23:48:20 +02:00
Marius Bakke
4ae8390ffc
gnu: python-djangorestframework: Update to 3.12.4. 
* gnu/packages/django.scm (python-djangorestframework): Update to 3.12.4.
 2021-05-05 23:48:20 +02:00
Marius Bakke
7cacd8c8da
gnu: python-django-picklefield: Test with Django 2.2. 
* gnu/packages/django.scm (python-django-picklefield)[native-inputs]: Change
from PYTHON-DJANGO to PYTHON-DJANGO-2.2.
 2021-05-05 23:48:20 +02:00
Marius Bakke
3239a2d5a5
gnu: python-django-debug-toolbar: Update to 3.2.1. 
* gnu/packages/django.scm (python-django-debug-toolbar): Update to 3.2.1.
 2021-05-05 23:48:20 +02:00
Marius Bakke
151f1720e3
gnu: python-sqlparse: Remove unnecessary runtime dependencies. 
* gnu/packages/databases.scm (python-sqlparse)[arguments]: Override 'wrap'
phase.
 2021-05-05 23:48:20 +02:00
Marius Bakke
b36b588105
gnu: python-cached-property: Update to 1.5.2. 
* gnu/packages/python-xyz.scm (python-cached-property): Update to 1.5.2.
 2021-05-05 23:48:20 +02:00
Marius Bakke
9e5acf045d
gnu: python-netaddr: Update to 0.8.0. 
* gnu/packages/python-xyz.scm (python-netaddr): Update to 0.8.0.
 2021-05-05 23:48:19 +02:00
Marius Bakke
4cfc87d699
gnu: python-asgiref: Update to 3.3.4. 
* gnu/packages/python-web.scm (python-asgiref): Update to 3.3.4.
 2021-05-05 23:48:19 +02:00
Marius Bakke
3dcbcd4fa5
gnu: python-bcrypt: Update to 3.2.0. 
* gnu/packages/python-crypto.scm (python-bcrypt): Update to 3.2.0.
 2021-05-05 23:48:19 +02:00
Marius Bakke
5ede810185
gnu: python-django-auth-ldap: Update to 2.4.0. 
* gnu/packages/django.scm (python-django-auth-ldap): Update to 2.4.0.
 2021-05-05 23:48:19 +02:00
Marius Bakke
314f96421e
gnu: python-sqlparse: Update to 0.4.1. 
* gnu/packages/databases.scm (python-sqlparse): Update to 0.4.1.
 2021-05-05 23:48:19 +02:00
Marius Bakke
a1cd01e622
gnu: uBlock Origin: Update to 1.35.2. 
* gnu/packages/browser-extensions.scm (uassets): Update to f52147302.
(ublock-origin): Update to 1.35.2.
 2021-05-05 23:48:19 +02:00
Ludovic Courtès
76c4646beb
gnu: guile2.2-guix: Add missing dependencies. 
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/package-management.scm (guile2.2-guix)[inputs]
[propagated-inputs]: Add GUILE2.2-LIB, GUILE2.2-ZLIB, and
GUILE2.2-LZLIB.
 2021-05-05 23:44:39 +02:00
Ludovic Courtès
ca3780835f
gnu: guile-lzlib: Add Guile 2.2 variant. 
* gnu/packages/guile.scm (guile2.2-lzlib): New variable.
 2021-05-05 23:44:33 +02:00
Ludovic Courtès
3a3e62cc56
gnu: guile-zlib: Add Guile 2.2 variant. 
* gnu/packages/guile.scm (guile2.2-zlib): New variable.
 2021-05-05 23:44:28 +02:00
Ludovic Courtès
1ca0a9a307
gnu: rasdaemon: Fix Texinfo syntax of description. 
Regression introduced in 58805da44d.

* gnu/packages/linux.scm (rasdaemon)[description]: Avoid @acronym since
Guile's Texinfo module doesn't currently support @comma{}.
* doc/guix.texi (Linux Services): Use @comma{} within @acronym.
 2021-05-05 23:42:57 +02:00
Xinglu Chen
f47b8b332b
gnu: emacs-vertico: Update to 0.8. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.8.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-05 19:21:12 +02:00
Xinglu Chen
de9c69516a
gnu: emacs-corfu: Update to 0.6. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.6.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-05 19:21:12 +02:00
Mike Gerwitz
f30e8f2909
gnu: Add tla2tools. 
This introduces tla2tools.jar, which contains the TLA+ model checker
and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX
typesetting system; PlusCal translator; and more.  I have added five
wrapper scripts for convenience, rather than invoking `java' manually.
The wrapper scripts are not comprehensive; users who are familiar with
tla2tools.jar, or have read the book Specifying Systems, may still
invoke the commands in the traditional way.

The minimum JDK version is 11.  I chose to stick with that rather than
bumping it to 14 (which is the largest version currently in Guix)
because each OpenJDK version in Guix depends on the version before it,
and so it needlessly results in many 100s of MiB of unnecessary
dependencies.

Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used
with TLA+.

* gnu/packages/java.scm (tla2tools): New variable.
* gnu/packages/patches/tla2tools-build-xml.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:46 +02:00
Mike Gerwitz
674b4bd1a6
gnu: Add java-jline-reader. 
This package is part of JLine 3.

* gnu/packages/java.scm (java-jline-reader): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Mike Gerwitz
1700dfefbe
gnu: Add java-jline-terminal. 
This is part of JLine 3.

I was able to get this working properly under Guix by providing ncurses'
infocmp, as well as ensuring the *.caps files were present in the JAR,
but similar methods didn't work for the tests; if you have Java
knowledge, I'd appreciate the help getting those tests enabled.

* gnu/packages/java.scm (java-jline-terminal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Mike Gerwitz
e28ea14693
gnu: Add java-eclipse-lsp4j packages. 
All of these packages are components of java-eclipse-lsp4j, packaged
independently.  This contains only what was needed for tla2tools, and so
there are parts of java-eclipse-lsp4j that are not packaged.

Note that this does not package the latest version (0.12.0 at the time
of writing)---it depends on the Xtend language, which is a huge
packaging effort.  0.10.0 is the version expected by tla2tools, for
which this dependency was introduced.

* gnu/packages/java.scm (java-eclipse-lsp4j-common): New variable.
(java-eclipse-lsp4j-jsonrpc): New variable.
(java-eclipse-lsp4j-jsonrpc-debug): New variable.
(java-eclipse-lsp4j-generator): New variable.
(java-eclipse-lsp4j-debug): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Mike Gerwitz
58b0258a20
gnu: Add java-eclipse-xtext-xbase-lib. 
This package is a component of xtext-lib.  The rest of xtext-lib was not
added.

* gnu/packages/java.scm (java-eclipse-xtext-xbase-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Mike Gerwitz
45915d331a
gnu: Add java-gson-2.8.6. 
This introduces a new package rather than upgrading the exist java-gson
package because it is built using OpenJDK11; I didn't want to have to
propagate that JDK dependency to the other packages that use it.

OpenJDK 11 was chosen becuase this dependency was introduced for
tla2tools.

* gnu/packages/java.scm (java-gson-2.8.6): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Philip McGrath
0ca37f3c7d
gnu: racket: Add aditional mirrors. 
* gnu/packages/racket.scm (racket-minimal, racket)[source](uri): Lift
base urls into a new internal variable, '%installer-mirrors'.
Add mirrors at the University of Utah, Northwestern University,
the University of Waterloo, and Vrije Universiteit Brussel (Infogroep).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Philip McGrath
93867cb3be
gnu: racket: Racket inherits racket-minimal, not vice versa. 
By design, the `racket` package is equivalent to 'racket-minimal'
plus 'raco pkg install -i main-distribution'.
This switch brings the Guix packages a small step closer to that goal.

* gnu/packages/racket.scm (racket-minimal, racket): Change
'racket-minimal' to be the base package and 'racket' to inherit
from it.  Move 'version', 'patches', 'home-page', 'build-system',
'arguments', and 'license' to 'racket-minimal'.
* gnu/packages/racket.scm (racket)[inputs]: Rather than copy and
pasting, use '(package-inputs racket-minimal)'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:45 +02:00
Philip McGrath
cd9454f6ed
gnu: racket: Remove obsolete patch. 
* gnu/packages/racket.scm (racket)[source](patches): Remove
"racket-store-checksum-override.patch", which is no longer needed since
we stopped injecting store paths into Racket files in commit 834aa48:
see <https://issues.guix.gnu.org/47180>.
* gnu/packages/patches/racket-store-checksum-override.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Philip McGrath
3df04eb09f
gnu: racket: Move to (gnu packages racket). 
* gnu/packages/scheme.scm (racket,racket-minimal): Move to ...
* gnu/packages/racket.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/racket.scm (racket)[synopsis]: Tweak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Vinicius Monego
3eec8cd31d
gnu: Add labplot. 
* gnu/packages/kde.scm (labplot): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Vinicius Monego
adc96e1db3
gnu: Add libcerf. 
* gnu/packages/maths.scm (libcerf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Stefan Reichör
9661eb86e0
gnu: Add castget. 
* gnu/packages/gpodder.scm (castget): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Simon Josefsson
9c3986ffaf
gnu: Add xmlsec-openssl. 
* gnu/packages/xml.scm (xmlsec-openssl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:44 +02:00
Michael Rohleder
561db254a5
gnu: xboard: Set default engine to gnuchess. 
Fixes <https://issues.guix.gnu.org/45236>.

* gnu/packages/games.scm (xboard): Set default engine to gnuchess.
[arguments]: Add phase 'patch-default-engine.
[inputs]: Add chess.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-05-05 16:56:43 +02:00
Ludovic Courtès
7b83f6b992
gnu: lepton-eda: Switch to Guile 3.0. 
* gnu/packages/engineering.scm (lepton-eda)[inputs]: Replace GUILE-2.2
with GUILE-3.0.
 2021-05-05 16:56:43 +02:00
Ricardo Wurmus
da7f89c737
gnu: python-pybedtools: Update to 0.8.2. 
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.2.
[arguments]: Remove outdated substitutions; simplify check phase.
 2021-05-05 16:18:13 +02:00
Ricardo Wurmus
75af43162e
gnu: python-nbconvert: Use patched texlive-amsfonts. 
This is intended to fix a non-deterministic build error when xelatex inspects
the fonts directory and finds a broken font from texlive-amsfonts before the
correct font in texlive-cm.

* gnu/packages/python-xyz.scm (python-nbconvert)[native-inputs]: Replace
texlive-amsfonts with texlive-amsfonts/patched.
 2021-05-05 15:28:14 +02:00
Ricardo Wurmus
9db6798824
gnu: Add texlive-amsfonts/patched. 
* gnu/packages/tex.scm (texlive-amsfonts/patched): New variable.
 2021-05-05 15:28:06 +02:00
Ludovic Courtès
af66a9510f
gnu: guix: Phases refer to #:system, #:target, and #:native-inputs. 
* gnu/packages/package-management.scm (guix)[arguments]: In
'copy-bootstrap-guile' and 'wrap-program' phases, refer to #:system,
 #:native-inputs, and #:target instead of unquoting (%current-system)
and (%current-target-system).
 2021-05-05 12:08:28 +02:00
Ludovic Courtès
c47f3fc135
gnu: guix: Avoid Bash wrapper. 
The Bash wrapper created by 'wrap-program' creates an extra
indirection and may annoyingly emit locale warnings:

  /gnu/store/…-bash-minimal-5.0.16/bin/bash: warning: setlocale: LC_ALL: cannot change locale (wtf)

This warning would typically show up when running Guix, as produced by
'guix pack guix', on a foreign distro, annihilating efforts made in
1d4ab335b2 and
8a973abc6f.

* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, remove 'string-join' call for PATH and GOPATH.
Replace 'wrap-program' call with a 'substitute*' form.  Remove (when
target ...) form.
[inputs]: Remove "bash-minimal" added in commit
38b9af7c92 and no longer needed.
 2021-05-05 12:08:17 +02:00
Ludovic Courtès
72b7ea416b
gnu: guix: Add run-time dependency on Guile-Lib. 
This is a followup to 02e2e093e8, which
added Guile-Lib as an input but did not add it to the wrapper's search
path.

* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, add GUILE-LIB to DEPS.
 2021-05-05 12:08:13 +02:00
Arun Isaac
c1036042a5
gnu: crm114: Use emacs-build-system install phase. 
* gnu/packages/mail.scm (crm114)[arguments]: Install the crm114 emacs mode
using the install phase from emacs-build-system, instead of in the custom
pre-install phase. Run the make-autoloads phase after this new
install-emacs-mode phase.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-05-05 10:01:48 +02:00
Ludovic Courtès
dd3e4fe6e7
gnu: guile2.2-guix: Add missing dependencies. 
Reported by Maxime Devos <maximedevos@telenet.be>.

* gnu/packages/package-management.scm (guile2.2-guix)[inputs]
[propagated-inputs]: Add GUILE2.2-LIB, GUILE2.2-ZLIB, and
GUILE2.2-LZLIB.
 2021-05-05 00:57:36 +02:00
Ludovic Courtès
2238bd8ddc
gnu: guile-lzlib: Add Guile 2.2 variant. 
* gnu/packages/guile.scm (guile2.2-lzlib): New variable.
 2021-05-05 00:57:36 +02:00
Ludovic Courtès
2a9af22540
gnu: guile-zlib: Add Guile 2.2 variant. 
* gnu/packages/guile.scm (guile2.2-zlib): New variable.
 2021-05-05 00:57:36 +02:00
Ludovic Courtès
c3f20a6678
gnu: guix: Phases refer to #:system, #:target, and #:native-inputs. 
* gnu/packages/package-management.scm (guix)[arguments]: In
'copy-bootstrap-guile' and 'wrap-program' phases, refer to #:system,
 #:native-inputs, and #:target instead of unquoting (%current-system)
and (%current-target-system).
 2021-05-05 00:57:36 +02:00
Ludovic Courtès
e42bfd236e
gnu: guix: Avoid Bash wrapper. 
The Bash wrapper created by 'wrap-program' creates an extra
indirection and may annoyingly emit locale warnings:

  /gnu/store/…-bash-minimal-5.0.16/bin/bash: warning: setlocale: LC_ALL: cannot change locale (wtf)

This warning would typically show up when running Guix, as produced by
'guix pack guix', on a foreign distro, annihilating efforts made in
1d4ab335b2 and
8a973abc6f.

* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, remove 'string-join' call for PATH and GOPATH.
Replace 'wrap-program' call with a 'substitute*' form.  Remove (when
target ...) form.
[inputs]: Remove "bash-minimal" added in commit
38b9af7c92 and no longer needed.
 2021-05-05 00:57:35 +02:00
Ludovic Courtès
55f7cd701c
gnu: guix: Add run-time dependency on Guile-Lib. 
This is a followup to 02e2e093e8, which
added Guile-Lib as an input but did not add it to the wrapper's search
path.

* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, add GUILE-LIB to DEPS.
 2021-05-05 00:57:35 +02:00
Ludovic Courtès
7593d1b4b8
gnu: lepton-eda: Update to 1.9.14-20210407. 
* gnu/packages/engineering.scm (lepton-eda): Update to 1.9.14-20210407.
[arguments]: Adjust file names in 'fix-dynamic-link' phase.
 2021-05-05 00:57:35 +02:00
Ron Nazarov
2959adef94
gnu: Add node-once. 
* gnu/packages/node-xyz.scm (node-once): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-05-04 23:10:03 +02:00
Tobias Geerinckx-Rice
a6992b38e7
gnu: knockd: Omit duplicate COPYING copy. 
* gnu/packages/networking.scm (knockd)[arguments]: Set the typical
‘--docdir’.
 2021-05-04 22:48:34 +02:00
Tobias Geerinckx-Rice
222e691666
gnu: knockd: Update to 0.8. 
* gnu/packages/networking.scm (knockd): Update to 0.8.
 2021-05-04 22:48:34 +02:00
Tobias Geerinckx-Rice
763feb97cd
gnu: powertop: Update to 2.14. 
* gnu/packages/linux.scm (powertop): Update to 2.14.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Add required #:configure-flags.
[native-inputs]: Add autoconf, automake, gettext, and libtool.
 2021-05-04 22:48:34 +02:00
Tobias Geerinckx-Rice
14173cf4e9
gnu: rasdaemon: Edit synopsis & description. 
* gnu/packages/linux.scm (rasdaemon)[description]: Fix typo and edit.
 2021-05-04 22:48:34 +02:00
Tobias Geerinckx-Rice
27ee59d6a0
gnu: java-javaparser: Upgrade os.name to ‘Guix’. 
* gnu/packages/java.scm (java-javaparser)[arguments]: Drop ‘SD’.
 2021-05-04 22:48:34 +02:00
Tobias Geerinckx-Rice
58f4b49a52
gnu: go-gopkg-in-go-playground-assert-v1: Fix typo in description. 
* gnu/packages/golang.scm (go-gopkg-in-go-playground-assert-v1)
[description]: Fix typo.
 2021-05-04 22:30:01 +02:00
Roel Janssen
aa7eeabe9a
gnu: Add r-naturalsort. 
* gnu/packages/cran.scm (r-naturalsort): New variable.
 2021-05-04 21:34:24 +02:00
Leo Famulari
4ca8a00263
gnu: Exim: Update to 4.94.2 [security fixes]. 
Fixes CVE-2020-{27216,28007,28008,28009,28010,28011,28012,28013,28014,28015,
28016,28017,28018,28019,28020,28021,28022,28023,28024,28025,28026}.

See the upstream security advisory for more information:

https://exim.org/static/doc/security/CVE-2020-qualys/21nails.txt

* gnu/packages/mail.scm (exim): Update to 4.94.2.
 2021-05-04 11:42:07 -04:00
Tobias Geerinckx-Rice
721c5a8709
gnu: s6-linux-init: Update to 1.0.6.3. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.6.3.
 2021-05-04 16:14:15 +02:00
Tobias Geerinckx-Rice
9a12fbebb9
gnu: ethtool: Update to 5.12. 
* gnu/packages/networking.scm (ethtool): Update to 5.12.
 2021-05-04 16:12:44 +02:00
Tobias Geerinckx-Rice
8ff0d32df6
gnu: gthumb: Update to 3.10.3. 
* gnu/packages/gnome.scm (gthumb): Update to 3.10.3.
 2021-05-04 16:09:03 +02:00
Tobias Geerinckx-Rice
9432c40f8d
gnu: libhandy: Update to 1.2.2. 
* gnu/packages/gnome.scm (libhandy): Update to 1.2.2.
 2021-05-04 15:58:38 +02:00
Tobias Geerinckx-Rice
06cf2fc01f
gnu: busybox: Update to 1.33.1. 
* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-05-04 15:56:27 +02:00
Tobias Geerinckx-Rice
a49a007328
gnu: indi: Stop returning #t from phases. 
* gnu/packages/astronomy.scm (indi)[arguments]: Remove #t phase return values.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice
9a40c1d5bb
gnu: indi: Respect #:tests?. 
* gnu/packages/astronomy.scm (indi)[arguments]: Respect #:tests? in the
'check phase.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice
7f540e3ce0
gnu: indi: Check slightly more functionally. 
* gnu/packages/astronomy.scm (indi)[arguments]: Substitute
WITH-DIRECTORY-EXCURSION for double CHDIR.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice
ead465a312
gnu: indi: Update to 1.9.0. 
* gnu/packages/astronomy.scm (indi): Update to 1.9.0.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice
abdb0210bd
gnu: bcachefs-tools: Prepare for cross-compilation. 
* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]:
Use CC-FOR-TARGET and PKG-CONFIG-FOR-TARGET.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice
3d25bc8ae4
gnu: bcachefs-tools: Update to 0.1-6.a14d39d. 
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-6.a14d39d.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice
2fc9d51381
gnu: bitcoin-core@0.21: Update to 0.21.1. 
* gnu/packages/finance.scm (bitcoin-core-0.21): Update to 0.21.1.
 2021-05-04 15:40:31 +02:00
Ricardo Wurmus
bee797fa93
gnu: Add r-guitar. 
* gnu/packages/bioconductor.scm (r-guitar): New variable.
 2021-05-04 15:37:04 +02:00
Ricardo Wurmus
6cd9cb0e13
gnu: python-nbconvert: Simplify build phase. 
* gnu/packages/python-xyz.scm (python-nbconvert)[arguments]: Simplify build
phase "fix-paths-and-tests" by using WHICH; remove final boolean and reindent.
 2021-05-04 15:17:18 +02:00
Ricardo Wurmus
82c5d929b9
gnu: python-nbconvert: Use modular texlive packages. 
* gnu/packages/python-xyz.scm (python-nbconvert)[inputs]: Remove texlive.
[native-inputs]: Add texlive-union.
 2021-05-04 15:17:18 +02:00
Ricardo Wurmus
d7ef77c8ed
gnu: Add texlive-eurosym. 
* gnu/packages/tex.scm (texlive-eurosym): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
50bc363a76
gnu: Add texlive-tcolorbox. 
* gnu/packages/tex.scm (texlive-tcolorbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
be50619b30
gnu: Add texlive-adjustbox. 
* gnu/packages/tex.scm (texlive-adjustbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
9855f2b975
gnu: Add texlive-collectbox. 
* gnu/packages/tex.scm (texlive-collectbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
2f99cf3f38
gnu: Add texlive-storebox. 
* gnu/packages/tex.scm (texlive-storebox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
8e92a17431
gnu: Add texlive-ifoddpage. 
* gnu/packages/tex.scm (texlive-ifoddpage): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus
3c51abe059
gnu: Add texlive-titling. 
* gnu/packages/tex.scm (texlive-titling): New variable.
 2021-05-04 15:17:17 +02:00
Guillaume Le Vaillant
7ca996c3f5
gnu: sbcl-trivial-backtrace: Move lift to native-inputs. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to...
  [native-inputs]: ... here.
 2021-05-04 13:58:31 +02:00
Sharlatan Hellseher
4c2f810f97
gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bd 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update
  to 1.1.0-1.6eb65bd.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:53:03 +02:00
Sharlatan Hellseher
f46b6d6487
gnu: sbcl-static-dispatch: Update to 0.5. 
* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5.
  [version]: Use annotated tag of the latest release in upstream.
  [native-inputs]: Remove prove, add fiveam.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:43:02 +02:00
Sharlatan Hellseher
36d4877041
gnu: sbcl-cl-environments: Update to 0.4. 
* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4.
  [version]: Use annotated tag instead of direct commit, there are
  upstream releases available now.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:36:55 +02:00
Ricardo Wurmus
7694acebd1
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
 2021-05-04 10:11:34 +02:00
Ricardo Wurmus
b602ec9fba
gnu: r-mixomics: Update to 6.14.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1.
[propagated-inputs]: Add r-biocparallel.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
4286233e77
gnu: r-catalyst: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
2191a414ea
gnu: r-scran: Update to 1.18.7. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus
3c59d34107
gnu: r-biocpkgtools: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b75b3ba2c7
gnu: r-experimenthub: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
c1942727cf
gnu: r-bioassayr: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
5bd5f755f2
gnu: r-universalmotif: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b410f072b5
gnu: r-icobra: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
b2bdc2f130
gnu: r-interactionset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
390098ddd4
gnu: r-systempiper: Update to 1.24.6. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
fc1aef2ccd
gnu: r-genomeinfodb: Update to 1.26.7. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
8bd3170bcf
gnu: r-biocgenerics: Update to 0.36.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
d4051161e7
gnu: r-ensembldb: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
7072dc8c53
gnu: r-gage: Update to 2.40.2. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
3b002a49d4
gnu: r-annotationhub: Update to 2.22.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
8ddbf984a2
gnu: r-future-apply: Set HOME directory variable. 
* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME".
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus
553767d02a
gnu: r-matrixstats: Set HOME directory variable. 
* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase
"set-HOME".
 2021-05-04 09:47:32 +02:00
Hartmut Goebel
ec4012c582
gnu: sequoia: Update to 1.1.0. 
* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove
  phase "package", add phases "fix-rand-dependency" and "fix-permissions".
 2021-05-04 09:44:14 +02:00
Ricardo Wurmus
fcd002ccfa
gnu: r-pcapp: Update to 1.9-74. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-74.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
685f173894
gnu: r-sfsmisc: Update to 1.1-11. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-11.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
916477772e
gnu: r-tidyselect: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.1.1.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
f5335bffe5
gnu: r-viridislite: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.0.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
0ad98a178b
gnu: r-viridis: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.0.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
2fbdb15669
gnu: r-r-rsp: Add build phase to set HOME directory. 
* gnu/packages/statistics.scm (r-r-rsp)[arguments]: Add build phase
"set-HOME".
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus
2eab3898e1
gnu: r-r-cache: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.15.0.
[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
3ff0d6f797
gnu: r-dt: Update to 0.18. 
* gnu/packages/statistics.scm (r-dt): Update to 0.18.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
45cdf3ad61
gnu: r-segmented: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-4.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
c23b2fac17
gnu: r-rsqlite: Update to 2.2.7. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.7.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
e94cf411f0
gnu: r-bitops: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-bitops): Update to 1.0-7.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
866646194c
gnu: r-rcpparmadillo: Update to 0.10.4.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.4.0.0.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
883eab3ec6
gnu: r-withr: Update to 2.4.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.4.2.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
8530eaa5d6
gnu: r-devtools: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.0.
[propagated-inputs]: Remove r-covr and r-dt; add r-fs and r-lifecycle.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
2666871c1b
gnu: r-openssl: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.4.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
23a4436daf
gnu: r-tibble: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.1.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
5c45c5adfa
gnu: r-rlang: Update to 0.4.11. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.11.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
fe41452faf
gnu: r-knitr: Update to 1.33. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.33.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
dfafea7951
gnu: r-highr: Update to 0.9. 
* gnu/packages/statistics.scm (r-highr): Update to 0.9.
[propagated-inputs]: Add r-xfun.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
d1f236045b
gnu: r-formatr: Update to 1.9. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.9.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
321fc2e752
gnu: r-survival: Update to 3.2-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-11.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
db1323aaa8
gnu: r-spatial: Update to 7.3-14. 
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-14.
 2021-05-04 07:27:50 +02:00
Ricardo Wurmus
9015ae66d3
gnu: r-nnet: Update to 7.3-16. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-16.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
88bf883bc5
gnu: r-mgcv: Update to 1.8-35. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-35.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
9042db14b9
gnu: r-lattice: Update to 0.20-44. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-44.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
50c7032eef
gnu: r-kernsmooth: Update to 2.23-20. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-20.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
27e873a5e3
gnu: r-cluster: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.2.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
01f58c6270
gnu: r-class: Update to 7.3-19. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-19.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
73efca4064
gnu: r-mass: Update to 7.3-54. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-54.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
3cf8eab28f
gnu: r-boot: Update to 1.3-28. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-28.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
43a2eaad02
gnu: r-mlr3misc: Update to 0.9.1. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.1.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
065f3eac48
gnu: r-phangorn: Update to 2.7.0. 
* gnu/packages/cran.scm (r-phangorn): Update to 2.7.0.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
9788d909ca
gnu: r-tidymodels: Update to 0.1.3. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.3.
[propagated-inputs]: Remove r-magrittr; add r-conflicted and r-workflowsets.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
039c652a94
gnu: r-tidytext: Update to 0.3.1. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.3.1.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
0a7a9fd6a1
gnu: r-workflowsets: Update to 0.0.2. 
* gnu/packages/cran.scm (r-workflowsets): Update to 0.0.2.
[propagated-inputs]: Add r-generics.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
d14100cfea
gnu: r-tune: Update to 0.1.5. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.5.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
62824117c0
gnu: r-exactranktests: Update to 0.8-32. 
* gnu/packages/cran.scm (r-exactranktests): Update to 0.8-32.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
205a03eb2c
gnu: r-transphylo: Update to 1.4.5. 
* gnu/packages/cran.scm (r-transphylo): Update to 1.4.5.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
7fb817783d
gnu: r-muhaz: Update to 1.2.6.4. 
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.4.
 2021-05-04 07:27:49 +02:00
Ricardo Wurmus
278a60cd56
gnu: r-clusterr: Update to 1.2.3. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.3.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
81e94675ff
gnu: r-spatstat-core: Update to 2.1-2. 
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.1-2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
09a0040397
gnu: r-spatstat-geom: Update to 2.1-0. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.1-0.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
c5abf83937
gnu: r-lightgbm: Update to 3.2.1. 
* gnu/packages/cran.scm (r-lightgbm): Update to 3.2.1.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
7ac6dd6403
gnu: r-scatterpie: Update to 0.1.6. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.6.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
73f7bcf280
gnu: r-bridgesampling: Update to 1.1-2. 
* gnu/packages/cran.scm (r-bridgesampling): Update to 1.1-2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
d7cdf463e9
gnu: r-keyring: Update to 1.2.0. 
* gnu/packages/cran.scm (r-keyring): Update to 1.2.0.
[propagated-inputs]: Remove r-getpass; add r-askpass.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
df9774306a
gnu: r-rsconnect: Update to 0.8.17. 
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.17.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
6d2b288e24
gnu: r-tam: Update to 3.6-45. 
* gnu/packages/cran.scm (r-tam): Update to 3.6-45.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
2dc5918ef9
gnu: r-bdgraph: Update to 2.64. 
* gnu/packages/cran.scm (r-bdgraph): Update to 2.64.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
094341c4bf
gnu: r-openmx: Update to 2.19.5. 
* gnu/packages/cran.scm (r-openmx): Update to 2.19.5.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
ecba34b7d1
gnu: r-rpf: Update to 1.0.7. 
* gnu/packages/cran.scm (r-rpf): Update to 1.0.7.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
ee70707e99
gnu: r-rsvg: Update to 2.1.2. 
* gnu/packages/cran.scm (r-rsvg): Update to 2.1.2.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
5aa13eeb6d
gnu: r-qqman: Update to 0.1.8. 
* gnu/packages/cran.scm (r-qqman): Update to 0.1.8.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
570a872ad8
gnu: r-anthropometry: Update to 1.15. 
* gnu/packages/cran.scm (r-anthropometry): Update to 1.15.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
9c6148d3e5
gnu: r-adagio: Update to 0.8.4. 
* gnu/packages/cran.scm (r-adagio): Update to 0.8.4.
[propagated-inputs]: Add r-lpsolve.
[native-inputs]: Remove gfortran.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
12d5937160
gnu: r-qgam: Update to 1.3.3. 
* gnu/packages/cran.scm (r-qgam): Update to 1.3.3.
 2021-05-04 07:27:48 +02:00
Ricardo Wurmus
eda03d2462
gnu: r-emojifont: Update to 0.5.5. 
* gnu/packages/cran.scm (r-emojifont): Update to 0.5.5.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
deb085d8bc
gnu: r-parameters: Update to 0.13.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.13.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
d25069df0b
gnu: r-terra: Update to 1.2-5. 
* gnu/packages/cran.scm (r-terra): Update to 1.2-5.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8bf6516ff9
gnu: r-xgboost: Update to 1.4.1.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.4.1.1.
[propagated-inputs]: Add r-jsonlite.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
e0121c91fd
gnu: r-ingredients: Update to 2.2.0. 
* gnu/packages/cran.scm (r-ingredients): Update to 2.2.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
4cfd543cc1
gnu: r-dqrng: Update to 0.3.0. 
* gnu/packages/cran.scm (r-dqrng): Update to 0.3.0.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
aca781b9a4
gnu: r-clue: Update to 0.3-59. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-59.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
abc63422de
gnu: r-ggplotify: Update to 0.0.6. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.6.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
da1f80f1e1
gnu: r-svmisc: Update to 1.1.4. 
* gnu/packages/cran.scm (r-svmisc): Update to 1.1.4.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
5d670caf8f
gnu: r-rjava: Update to 1.0-4. 
* gnu/packages/cran.scm (r-rjava): Update to 1.0-4.
[inputs]: Remove pcre.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8b5eeb9f96
gnu: r-bookdown: Update to 0.22. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.22.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
bacfd45f67
gnu: r-pegas: Update to 1.0. 
* gnu/packages/cran.scm (r-pegas): Update to 1.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
4ab5855f39
gnu: r-rsvd: Update to 1.0.5. 
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.5.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
e2a1a68e60
gnu: r-future: Add build phase to set HOME directory. 
* gnu/packages/cran.scm (r-future)[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
1b7948536b
gnu: r-parallelly: Update to 1.25.0. 
* gnu/packages/cran.scm (r-parallelly): Update to 1.25.0.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
8c89cc7edb
gnu: r-listenv: Add phase to set HOME directory. 
* gnu/packages/cran.scm (r-listenv)[arguments]: Add build phase "set-HOME".
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
2ac230527b
gnu: r-rmpfr: Update to 0.8-4. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-4.
 2021-05-04 07:27:47 +02:00
Ricardo Wurmus
81e81183a6
gnu: r-ouch: Update to 2.16. 
* gnu/packages/cran.scm (r-ouch): Update to 2.16.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
fbe71c6c90
gnu: r-rgl: Update to 0.106.8. 
* gnu/packages/cran.scm (r-rgl): Update to 0.106.8.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
75a461aa74
gnu: r-rcppparallel: Update to 5.1.3. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.3.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
3dbd04d7ca
gnu: r-gh: Update to 1.3.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.3.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
47a15ac7d0
gnu: r-ggeffects: Update to 1.1.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
363a669276
gnu: r-performance: Update to 0.7.1. 
* gnu/packages/cran.scm (r-performance): Update to 0.7.1.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
787a0b26e1
gnu: r-bayestestr: Update to 0.9.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.9.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
da20f1f0b2
gnu: r-tmb: Update to 1.7.20. 
* gnu/packages/cran.scm (r-tmb): Update to 1.7.20.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
3e4baacd91
gnu: r-emmeans: Update to 1.6.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.0.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
795516ff57
gnu: r-multcomp: Update to 1.4-17. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-17.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
94080fc0aa
gnu: r-magick: Update to 2.7.2. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.2.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
799e6b1b20
gnu: r-svdialogs: Update to 1.0.3. 
* gnu/packages/cran.scm (r-svdialogs): Update to 1.0.3.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
c4300dc298
gnu: r-svgui: Update to 1.0.1. 
* gnu/packages/cran.scm (r-svgui): Update to 1.0.1.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
0ef00dd7f6
gnu: r-raster: Update to 3.4-10. 
* gnu/packages/cran.scm (r-raster): Update to 3.4-10.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
ea359fb92f
gnu: r-doby: Update to 4.6.10. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.10.
[propagated-inputs]: Add r-curry and r-microbenchmark.
 2021-05-04 07:27:46 +02:00
Ricardo Wurmus
b30b025c6f
gnu: r-writexl: Update to 1.4.0. 
* gnu/packages/cran.scm (r-writexl): Update to 1.4.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
2f88711ce3
gnu: r-flextable: Update to 0.6.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.6.5.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
8067bcdf53
gnu: r-entropy: Update to 1.3.0. 
* gnu/packages/cran.scm (r-entropy): Update to 1.3.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
070b766127
gnu: r-brglm: Update to 0.7.2. 
* gnu/packages/cran.scm (r-brglm): Update to 0.7.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
d11b3f575f
gnu: r-rbibutils: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.1.1.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
58327ba184
gnu: r-reticulate: Update to 1.20. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.20.
[propagated-inputs]: Add r-png and r-withr.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
c2cc32c88a
gnu: r-rastervis: Update to 0.50.2. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
0161d0bcf0
gnu: r-later: Update to 1.2.0. 
* gnu/packages/cran.scm (r-later): Update to 1.2.0.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
22778956e8
gnu: r-parsedate: Update to 1.2.1. 
* gnu/packages/cran.scm (r-parsedate): Update to 1.2.1.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
f65d223eec
gnu: r-pillar: Update to 1.6.0. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
329bd33fb8
gnu: r-vctrs: Update to 0.3.8. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.8.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
13ec1ba40c
gnu: r-processx: Update to 3.5.2. 
* gnu/packages/cran.scm (r-processx): Update to 3.5.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
b7d7add1ad
gnu: r-cli: Update to 2.5.0. 
* gnu/packages/cran.scm (r-cli): Update to 2.5.0.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
57273b958c
gnu: r-hardyweinberg: Update to 1.7.2. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.2.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
df5518d5fa
gnu: r-recipes: Update to 0.1.16. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.16.
[propagated-inputs]: Add r-ellipsis.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
cf712682cc
gnu: r-inum: Update to 1.0-4. 
* gnu/packages/cran.scm (r-inum): Update to 1.0-4.
 2021-05-04 07:27:45 +02:00
Ricardo Wurmus
3008d477b5
gnu: r-pkgload: Update to 1.2.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.1.
[propagated-inputs]: Remove r-pkgbuild.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
b840705278
gnu: r-ape: Update to 5.5. 
* gnu/packages/cran.scm (r-ape): Update to 5.5.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
c6c214e3a3
gnu: r-haven: Update to 2.4.1. 
* gnu/packages/cran.scm (r-haven): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
f8203363a7
gnu: r-jquerylib: Update to 0.1.4. 
* gnu/packages/cran.scm (r-jquerylib): Update to 0.1.4.
[source]: Update snippet.
[arguments]: Update build phase "process-javascript".
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
7e3542600d
gnu: r-curl: Update to 4.3.1. 
* gnu/packages/cran.scm (r-curl): Update to 4.3.1.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
9afef02ebd
gnu: r-servr: Update to 0.22. 
* gnu/packages/cran.scm (r-servr): Update to 0.22.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
912a8a2ece
gnu: r-httpuv: Update to 1.6.0. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.0.
[propagated-inputs]: Remove r-bh.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
2e59bab732
gnu: r-callr: Update to 3.7.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.7.0.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
2a5c02e172
gnu: r-tidyverse: Update to 1.3.1. 
* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.1.
[propagated-inputs]: Add r-dtplyr, r-googledrive, and r-googlesheets4.
[native-inputs]: Add r-knitr.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
9aa1bde3b1
gnu: r-shadowtext: Update to 0.0.8. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.0.8.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
b9c5f17d23
gnu: r-mboost: Update to 2.9-5. 
* gnu/packages/cran.scm (r-mboost): Update to 2.9-5.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
a297fc6f74
gnu: r-ellipsis: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.2.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
e68e3f68a5
gnu: r-v8: Update to 3.4.2. 
* gnu/packages/cran.scm (r-v8): Update to 3.4.2.
[inputs]: Add zlib.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
14356d23be
gnu: r-brio: Update to 1.1.2. 
* gnu/packages/cran.scm (r-brio): Update to 1.1.2.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
6c07e74106
gnu: Add r-curry. 
* gnu/packages/cran.scm (r-curry): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
946f1608ae
gnu: Add r-googlesheets4. 
* gnu/packages/cran.scm (r-googlesheets4): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
4c2826df65
gnu: Add r-ids. 
* gnu/packages/cran.scm (r-ids): New variable.
 2021-05-04 07:27:44 +02:00
Ricardo Wurmus
11108a9ab4
gnu: Add r-googledrive. 
* gnu/packages/cran.scm (r-googledrive): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
fadf5765c1
gnu: Add r-dtplyr. 
* gnu/packages/cran.scm (r-dtplyr): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
8a3766e1d3
gnu: Add r-conflicted. 
* gnu/packages/cran.scm (r-conflicted): New variable.
 2021-05-04 07:27:43 +02:00
Ricardo Wurmus
aa9a94bba9
gnu: r-abn: Update to 2.5-0. 
* gnu/packages/cran.scm (r-abn): Move from here...
* gnu/packages/bioconductor.scm (r-abn): ...to here; update to 2.5-0.
[propagated-inputs]: Add r-rgraphviz.
 2021-05-04 07:27:43 +02:00
Michael Rohleder
d260bd51b5
gnu: emacs-yasnippet-snippets: Update to 0.24. 
* gnu/packages/emacs-xyz.scm (emacs-yasnippet-snippets): Update to 0.24.
[propagated-inputs]: Remove emacs-s.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-04 01:05:23 +02:00