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Author SHA1 Message Date
Vivien Kraus
b369dc272e
gnu: epiphany: Update to 44.7. 
Soup2 is not supported anymore, we do not need to disable it explicitely.

* gnu/packages/gnome.scm (epiphany): Update to 44.7.
[#:phases]<skip-gtk-update-icon-cache>: Update for build system changes.
<disable-failing-tests>: Partially disable web_view_test.
<pre-check>: Remove.
<check>: Replace with a new phase.
<gst-wrap>: New phase.
[#:configure-flags]: Remove “-Dsoup2=disabled”.
[inputs]: Replace gcr-3 with gcr and webkitgtk-for-gtk3 with webkitgtk.
Add bash-minimal, gstreamer, gst-plugins-base, gst-plugins-good, and
libadwaita.
Remove libdazzle and libhandy.

Change-Id: I95ab6551a1b38254191801549be9dba0abb04593
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-07 18:27:44 +01:00
Vivien Kraus
0831c72df6
gnu: dbus-service: only symlink /run/dbus the first time 
Due to an error in the nesting of S-Expressions, the re-linking of
/var/run/dbus to /run/dbus would occur even if it was already a
correct symlink.  It should only happen if the symlink is different.

* gnu/services/dbus.scm (dbus-activation): Adjust accordingly.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-07 17:11:02 +01:00
Liliana Marie Prikler
1cd97066c2
Merge branch 'master' into gnome-team 2024-01-01 21:56:00 +01:00
Vivien Kraus
b8175bc85a
gnu: gnome-system-monitor: Update to 44.0. 
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 44.0.

Change-Id: I1b4c0f16ec48ee5dfb07ad255ceb9252e0160945
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:39:41 +01:00
Vivien Kraus
6a4151e411
gnu: gnome-shell-extensions: Update to 44.0. 
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 44.0.

Change-Id: Id5664a9f86f7a64179975cd9c5cbf7b6521c5844
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:39:18 +01:00
Vivien Kraus
44c0e30e9c
gnu: gnome-weather: Update to 44.0. 
* gnu/packages/gnome.scm (gnome-weather): Update to 44.0.

Change-Id: I674f6b735d3d5917fb1f15f85d3ffa9c1e2fa221
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:39:18 +01:00
Vivien Kraus
c47ecfa6f9
gnu: gupnp: Update to 1.6.6. 
* gnu/packages/gnome.scm (gupnp): Update to 1.6.6.
[arguments]: Convert to list of G-Expressions.
[#:configure-flags]: Add -Dgtk_doc=true.
[native-inputs]: Add gi-docgen.

Change-Id: Ia173720a9b888b4064417f1df79508a8c5b7fb14
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:39:18 +01:00
Vivien Kraus
9fa740331a
gnu: gnome-boxes: Update to 44.3. 
* gnu/packages/gnome.scm (gnome-boxes): Update to 44.3.

Change-Id: I7e8f0faa0c5d2366f49fd38eb565c2c711d2a14c
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:08:50 +01:00
Vivien Kraus
413da336f7
gnu: eog: Update to 44.3. 
* gnu/packages/gnome.scm (eog): Update to 44.3.

Change-Id: I3088d9213fe044746d8043d01c0243ce19e616e9
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:08:12 +01:00
Vivien Kraus
d6f883e534
gnu: gnome-user-docs: Update to 44.6. 
* gnu/packages/gnome.scm (gnome-user-docs): Update to 44.6.
[home-page]: Update from redirection.

Change-Id: I8c0989881be2cadac8453dc5d1df6c97857822eb
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:07:40 +01:00
Vivien Kraus
23be219c05
gnu: gcr: Update to 4.1.0. 
* gnu/packages/gnome.scm (gcr): Update to 4.1.0.

Change-Id: I95cb59b6850190573f6b3464bce1dbe8fc0f9354
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:07:04 +01:00
Vivien Kraus
f17e549043
gnu: grilo-plugins: Update to 0.3.16. 
* gnu/packages/gnome.scm (grilo-plugins): Update to 0.3.16.
[arguments]: Convert to a list of G-Expressions.
[home-page]: Update.

Change-Id: I20876f9b594f8d33f2c85e313656791fb3b6812b
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:06:30 +01:00
Vivien Kraus
9ee9aad22c
gnu: grilo: Update to 0.3.16. 
* gnu/packages/gnome.scm (grilo): Update to 0.3.16.
[native-inputs]: Add python.
[home-page]: Update.

Change-Id: Iaf391b1246e74b58536a0470ea68bd53fefe2f93
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:06:30 +01:00
Vivien Kraus
12c2307451
gnu: cheese: Update to 44.1. 
The build system changed how it disables icon-theme.cache.

* gnu/packages/gnome.scm (cheese): Update to 44.1.
[#:phases]<skip-gtk-update-icon-cache>: Update.

Change-Id: I95044d29da019345d14b5fe8f1671f0f7046fba3
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-01 21:06:05 +01:00
Ricardo Wurmus
ee0cf3b9ff
gnu: r-seurat-utils: Update to 2.5.0-1.c0374cc. 
* gnu/packages/bioinformatics.scm (r-seurat-utils): Update to 2.5.0-1.c0374cc.
[propagated-inputs]: Add r-databaselinke-r, r-enhancedvolcano, r-foreach,
r-job, r-magrittr, r-pheatmap, r-plotly, r-qs, r-rstudioapi, and r-tidyverse.

Change-Id: Iea2df8205357e7717c0adec00f6852794817d295
 2024-01-01 19:22:11 +01:00
Ricardo Wurmus
679560ffca
gnu: Add r-databaselinke-r. 
* gnu/packages/bioinformatics.scm (r-databaselinke-r): New variable.

Change-Id: I0cfcb5b6810b7afebbb9ccb02aafcce05507536c
 2024-01-01 19:21:59 +01:00
Ricardo Wurmus
510c2206e4
gnu: Add r-job. 
* gnu/packages/cran.scm (r-job): New variable.

Change-Id: I37a0870bd22d5bc2e700f843fca49f242a197440
 2024-01-01 19:21:37 +01:00
Ricardo Wurmus
ff586211aa
gnu: Remove r-rmetasim. 
This package fails to build and has been archived on CRAN in 2021.

* gnu/packages/cran.scm (r-rmetasim): Remove variable.

Change-Id: I46a6c98d7e05faac6f83e29dfb21196a69bae56b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
00e6f55ddb
gnu: r-batchelor: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1.

Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
c8d1f64f40
gnu: r-genomeinfodb: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5.

Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
b0580a05be
gnu: r-seuratdisk: Update to 0.0.0.9021-1.877d4e1. 
* gnu/packages/cran.scm (r-seuratdisk): Update to 0.0.0.9021-1.877d4e1.

Change-Id: Iab1426efe5b792aacf19ab15e9d6d95be0bac38b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
2510849ec9
gnu: r-sparsearray: Update to 1.2.3. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3.

Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
31e882e4b1
gnu: r-genomicscores: Update to 2.14.3. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3.

Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
e15b95c126
gnu: r-metapod: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1.

Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
5673484cbc
gnu: r-biocneighbors: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1.

Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
a72c6ba19a
gnu: r-genomeinfodb: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4.

Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
25d7dbd61c
gnu: Add r-inext. 
* gnu/packages/cran.scm (r-inext): New variable.

Change-Id: I6a87cfb57bfc8000520b98999cf260d2873f0b61
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
513994aead
import/cran: Restore format-inputs. 
This fixes a regression introduced in commit
e6223017d95bc615b2648f0798d9a3904d5b5f57 causing the selected input style to
be ignored.

* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.

Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
a2a8c4c13a
gnu: r-fpc: Update to 2.2-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-11.

Change-Id: Iebf343be3f9ce37fc9d740286b185e9c5c733efb
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
79fe5cbad0
gnu: r-cowplot: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.2.

Change-Id: Ie1688b1eb38e2c3ef04460cc4dd7c35179b6c48e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
df69fcac77
gnu: r-vipor: Update to 0.4.7. 
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.7.

Change-Id: I7a7442ae64d5a96a4ab20427ab5fb8bcdc2e51e2
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
8047e5328b
gnu: r-matrixstats: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.2.0.

Change-Id: I08ad75b3cdfefdeb9718086be75bb24153e117c9
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
2b2ad78597
gnu: r-segmented: Update to 2.0-1. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-1.

Change-Id: Ieb6dac2712af46fffd29959d9510153dd1f1fb5d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
cd1ea61bc0
gnu: r-brew: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-brew): Update to 1.0-10.

Change-Id: I8d3045477d8b329f0c626738a0cd8cf02862e34c
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
373c9b4efc
gnu: r-yaml: Update to 2.3.8. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.3.8.

Change-Id: I0b654db60d894e160c1ad8aa77000fc90ea649c3
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
da28470890
gnu: r-dbi: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.2.0.

Change-Id: I4384d37dd602b396fce736ff5c3b33e3da965233
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
7f7c2a4805
gnu: r-stringi: Update to 1.8.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.3.

Change-Id: Id600b65a926a233400870444ad3028690be3e92e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
5106fc899a
gnu: r-mgcv: Update to 1.9-1. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-1.

Change-Id: I9275750902b6e2d2bd1c7394363bdbc66043c4de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
b9e33a7fd4
gnu: r-ggh4x: Update to 0.2.7. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.7.

Change-Id: I0211d69404806922d6725f4936593573674d7e59
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
ba23ca977e
gnu: r-ragg: Update to 1.2.7. 
* gnu/packages/cran.scm (r-ragg): Update to 1.2.7.

Change-Id: I95f8c91f678181066745cad09295c4bcf24993de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
6b86c1f3db
gnu: r-mlr3learners: Update to 0.5.8. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.8.

Change-Id: Icae31b1458044eb224a19f06b46a45906a9c0f6d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
42c76e2f49
gnu: r-mlr3: Update to 0.17.1. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.17.1.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ida585a8ac45d8f78de787a243808788927ab765a
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
c5df00c1d1
gnu: r-projpred: Update to 2.8.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.8.0.

Change-Id: I01cfa407b53ccb02eea729319454f1f1f409d1d3
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
ae27de6649
gnu: r-rcdd: Update to 1.6. 
* gnu/packages/cran.scm (r-rcdd): Update to 1.6.

Change-Id: I6b76442004bb2fe3a6bb66c296562df295da2378
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
4b70228358
gnu: r-rsconnect: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.2.0.

Change-Id: I8611d8a82b040f33292cdd81b5a278bdf500e956
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
9fb3c0057b
gnu: r-gghighlight: Update to 0.4.1. 
* gnu/packages/cran.scm (r-gghighlight): Update to 0.4.1.

Change-Id: Ic4067391a7713b59081f8a688704175e5bb024aa
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
b7e2c6b1c8
gnu: r-tidygraph: Update to 1.3.0. 
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.0.
[propagated-inputs]: Add r-lifecycle.

Change-Id: I99834ca5ee3ca760d2d5f16245118cd56c5e2b75
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
8b5768d509
gnu: r-terra: Update to 1.7-65. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-65.

Change-Id: I4fbb281b56600d51e59c863e5cfba00005db91de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
ea6b9e91ff
gnu: r-yulab-utils: Update to 0.1.2. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.2.

Change-Id: If6c7afd545aae041a8f9a541845ae12b2285314e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
5709ad0046
gnu: r-haplo-stats: Update to 1.9.5. 
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.9.5.

Change-Id: Ic7e9c54242a0112de0b110e1b2c3c30288dd135a
 2024-01-01 14:35:15 +01:00