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Author SHA1 Message Date
Maxim Cournoyer
c76004c574
gnu: jami: Update to 20240124.3. 
* gnu/packages/jami.scm (libjami): Update to 20240124.3.
(jami): Likewise.

Change-Id: Ib0d8d5d566c5633bf2e33b1874ded92f2e451ff5
 2024-01-31 21:59:11 -05:00
Maxim Cournoyer
055d595bf8
gnu: dhtnet: Update to 0.0.1-1.41848a2. 
* gnu/packages/networking.scm (dhtnet): Update to 0.0.1-1.41848a2.
[inputs]: Add yaml-cpp.

Change-Id: I399260201e09185c33bbd441eb1a877a43e10d9f
 2024-01-31 21:59:10 -05:00
Sharlatan Hellseher
bf7991a8c7
gnu: go-honnef-co-go-tools: Update to 0.4.6. 
* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Update to 0.4.6.

Change-Id: Iac26c3147104a06a72e5910edb9fb3deba6be486
 2024-01-31 22:00:08 +00:00
Sharlatan Hellseher
cdb365eb07
gnu: golang-check: Sort packages alphabetically. 
This commit is a housekeeping measure to prepare for natural and
structured enlargement.

* gnu/packages/golang-check.scm: Improve module commentary introduce
sections for libraries and executables and sort packages alphabetically.

Change-Id: Ifcac216c1c04e569cfdf2a7d902165a36ed06b32
 2024-01-31 21:59:56 +00:00
Sharlatan Hellseher
0ab9930c0f
gnu: go-honnef-co-go-tools: Update homepage. 
Fixing lint warning by updating home page to actual one found on
project's GitHub page: URI <https://honnef.co/go/tools> returned
suspiciously small file (333 bytes)

* gnu/packages/golang-check.scm (go-honnef-co-go-tools) [home-page]:
Update it.

Change-Id: I8956b146ff3f826c11b03212c365cf91120380b6
 2024-01-31 21:20:18 +00:00
Nicolas Graves
f4dd770550
gnu: go-honnef-co-go-tools: Improve synopsis and description. 
* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Improve
synopsis and description.

Change-Id: I357626457418f8c6f1b05918226c33f7faa88d49
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
a27d0f975b
gnu: Add go-structlayout-pretty. 
* gnu/packages/golang-check.scm (go-structlayout-pretty): New variable.

Change-Id: I622a991b12708ee52eb412a3c6b3fbeeb512843d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
98651390a7
gnu: Add go-structlayout-optimize. 
* gnu/packages/golang-check.scm (go-structlayout-optimize): New variable.

Change-Id: I7e1ce9acbe3ec09cc8b441de4816b247a2742938
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
b3e74eb26d
gnu: Add go-structlayout. 
* gnu/packages/golang-check.scm (go-structlayout): New variable.

Change-Id: I7440cdf75238fc73451cefc73b3ce3eb3d4da323
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
d6410c5c47
gnu: Add go-staticcheck. 
* gnu/packages/golang-check.scm (go-staticcheck): New variable.

Change-Id: I82ce27df1bdbd79ae4740928e0661b585289d02b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
6d5fe89e8e
gnu: Add go-keyify. 
* gnu/packages/golang-check.scm (go-keyify): New variable.

Change-Id: I99d41a18cb0e00dd35bef9c2c8fce12748f24ad4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:20:17 +00:00
Nicolas Graves
eab88f2e45
gnu: Remove go-github-com-kisielk-gotool. 
* gnu/packages/golang-check.scm (go-github-com-kisielk-gotool): Delete variable.

Change-Id: Ic99bba40f4cd66335656f27bf7dd97d1b90bb8f1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-31 21:02:33 +00:00
Sharlatan Hellseher
b41bcc0434
gnu: go-torproject-org-pluggable-transports-goptlib: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib):
Move from here ...
gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I3bc97e64bd3680405c90eb84c2d7d3c7ff9092e0
 2024-01-31 20:14:29 +00:00
Sarah Morgensen
849f219b72
gnu: go-torproject-org-pluggable-transports-goptlib: Fix import path. 
* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib)
[arguments] <#:import-path>: Use actual module name from go.mod.
(go-github-com-operatorfoundation-shapeshifter-transports) [arguments]
<#:phases>: Remove obsolete 'patch phase for goptlib.
(go-github-com-operatorfoundation-obfs4) [arguments] <#:phases>: Likewise.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ib2e49164e2c750694101b497afe1be67c7fe6302
 2024-01-31 19:59:42 +00:00
Carlo Zancanaro
023c3e0ac4
services: certbot: Add one-shot service to renew certificates. 
* gnu/services/certbot.scm (certbot-renewal-one-shot): New procedure.
(certbot-service-type)[extensions]: Add it to shepherd-root extension.
(certbot-command): Make connection errors return a different exit code.
(certbot-activation): Remove message with certificate renewal instructions.

Change-Id: I614ac6214a753dba0396e2385a75926c8355caa1
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:19 +01:00
Carlo Zancanaro
d4a4b12f0a
services: certbot: Reload nginx in deploy hook. 
* gnu/services/certbot.scm (certbot-deploy-hook): Reload nginx.
* doc/guix.texi (Certificate services): Remove deploy-hook from example.

Change-Id: Ibb10481170a6fda7df72492072b939dd6a6ad176
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:16 +01:00
Carlo Zancanaro
fc0ec9a3cc
services: certbot: Create self-signed certificates before certbot runs. 
* gnu/services/certbot.scm (<certificate-configuration>): Add
start-self-signed? field.
(generate-certificate-gexp): New procedure.
(certbot-activation): Generate self-signed certificates when
start-self-signed? is #t.
* doc/guix.texi (Certificate services): Document start-self-signed?.

Change-Id: Icfd85ae0c3e29324acbcde6ba283546cf0e27a1d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:12 +01:00
Carlo Zancanaro
a2b1ef903b
services: certbot: Symlink certificates to /etc/certs. 
* gnu/services/certbot.scm (certbot-deploy-hook): New procedure.
(certbot-command): Pass new deploy hook to certbot.
* doc/guix.texi: Replace "letsencrypt/live" with "certs" throughout, except in
the certbot deploy-hook description.

Change-Id: I2ba5e4903d1e293e566b732a84b07d5a134b697d
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-31 16:54:03 +01:00
Guillaume Le Vaillant
7a45f7b9e1
gnu: cl-maidenhead: Update to 1.1-1.4b9c38e. 
* gnu/packages/lisp-xyz.scm (sbcl-maidenhead): Update to 1.1-1.4b9c38e.

Change-Id: I766a3d70fc330cf0f1628091c6ed52f1085199e5
 2024-01-31 10:41:33 +01:00
Charles
fa023a9300
gnu: cl-command-line-args: Update to 0.1.0. 
* gnu/packages/lisp-xyz.scm (sbcl-command-line-args): Update to 0.1.0.
  [inputs]: Add sbcl-charje.documentation.

Change-Id: Iadac4decc64f2333878dd5b106e1e82c33b40e30
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-31 10:34:55 +01:00
Clément Lassieur
88e8b807d6
gnu: torbrowser: Copy buildID from the official build. 
* gnu/packages/tor.scm (%moz-build-date): Update to 20240115174022.

Reported-by: André Batista <nandre@riseup.net>
Change-Id: Ia057d6efe9db9e04ece03d994ee226ecdbc6cc04
 2024-01-31 03:02:07 +01:00
Sharlatan Hellseher
c4687f5437
Revert "gnu: Add minify." 
This reverts commit f8c2d8141e.

Fixes: error: go-github-com-tdewolff-minify-v2: unbound variable
<https://ci.guix.gnu.org/eval/1086875/log/raw>

Change-Id: I26e02842980cf09e924ac1cae8f3a6421a005276
 2024-01-30 23:56:11 +00:00
Thomas Ieong
f8c2d8141e
gnu: Add minify. 
* gnu/packages/web.scm (minify): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I7289c77a17f63501b6c7771606d396241333ac3a
 2024-01-30 22:58:22 +00:00
Thomas Ieong
aab6ea6f41
gnu: Add go-github-com-matryer-try. 
* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
 2024-01-30 22:58:22 +00:00
Thomas Ieong
b998d58221
gnu: Add go-github-com-djherbis-atime. 
* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
 2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
376bba6030
gnu: Add (gnu packages golang-xyz) module. 
* gnu/packages/golang-xyz.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope.

Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
 2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
fb2b72a5f3
gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web). 
Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by
the owner on Feb 27, 2023.

* gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.

Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
 2024-01-30 22:58:22 +00:00
Ricardo Wurmus
f6bbee5f05
gnu: axoloti-patcher: Add missing headers. 
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic
headers in search paths.

Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
 2024-01-30 22:44:43 +01:00
Ricardo Wurmus
c2dc19aecc
gnu: axoloti-patcher: Use G-expression. 
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression;
delete 'make-git-checkout-writable phase.

Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
 2024-01-30 22:44:09 +01:00
Artyom V. Poptsov
bed3a0b547
gnu: yggdrasil: Update to 0.5.5. 
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5.

Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2024-01-30 17:11:54 +01:00
David Thompson
a901e950dd
gnu: guile-hoot: Update to 0.3.0. 
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0.

Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
 2024-01-30 11:08:37 -05:00
Ricardo Wurmus
7cdad00e30
gnu: r-scran: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2.

Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
 2024-01-30 16:59:52 +01:00
Ricardo Wurmus
aa7950070b
gnu: r-bioccheck: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest.

Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
8d8eec7f9d
gnu: r-flowcore: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1.

Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
9e1e462746
gnu: r-rsubread: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1.

Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
ca6e432089
gnu: r-edger: Update to 4.0.12. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.

Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
4df162962d
gnu: r-biostrings: Update to 2.70.2. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.

Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.

Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
 2024-01-30 16:59:51 +01:00
Ricardo Wurmus
6f11ca52f1
gnu: r-robustbase: Update to 0.99-2. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2.

Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
ef5640f763
gnu: r-viridis: Update to 0.6.5. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5.

Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
c72ceba47f
gnu: r-commonmark: Update to 1.9.1. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1.

Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
e6847d7a2f
gnu: r-data-table: Update to 1.15.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0.

Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
71936c6145
gnu: r-tfruns: Update to 1.5.2. 
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2.

Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
08d6f49857
gnu: r-spatstat-geom: Update to 3.2-8. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8.

Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
281db78112
gnu: r-iheatmapr: Update to 0.7.1. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1.

Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
 2024-01-30 15:48:57 +01:00
Ricardo Wurmus
2435d457e8
gnu: r-emoa: Update to 0.5-2. 
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2.

Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
6bde30b814
gnu: r-tidygraph: Update to 1.3.1. 
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1.

Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
a03ad38b2f
gnu: r-xgboost: Update to 1.7.7.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1.

Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
50e728fbab
gnu: r-yulab-utils: Update to 0.1.4. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4.

Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
48f41d06e8
gnu: r-bqtl: Update to 1.0-36. 
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36.

Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
2bb1d89f97
gnu: r-listenv: Update to 0.9.1. 
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1.

Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
 2024-01-30 15:48:56 +01:00
Ricardo Wurmus
8bad30c244
gnu: r-phylobase: Update to 0.8.12. 
* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12.

Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
b7e3c82000
gnu: r-densityclust: Update to 0.3.3. 
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.

Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
02931399e8
gnu: r-interp: Update to 1.1-6. 
* gnu/packages/cran.scm (r-interp): Update to 1.1-6.

Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
8b0a49ad4e
gnu: r-zip: Update to 2.3.1. 
* gnu/packages/cran.scm (r-zip): Update to 2.3.1.

Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
51d7fae43a
gnu: r-nestedcv: Update to 0.7.4. 
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
775ae73c3d
gnu: r-laeken: Update to 0.5.3. 
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.

Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
 2024-01-30 15:48:55 +01:00
Ricardo Wurmus
f3af65b8d0
gnu: r-sp: Update to 2.1-3. 
* gnu/packages/cran.scm (r-sp): Update to 2.1-3.

Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
5701d13103
gnu: r-powerlaw: Update to 0.80.0. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.

Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
854d1be754
gnu: r-httpuv: Update to 1.6.14. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.

Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
51ca656726
gnu: r-ga: Update to 3.2.4. 
* gnu/packages/cran.scm (r-ga): Update to 3.2.4.

Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1. 
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.

Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
 2024-01-30 15:48:54 +01:00
Ricardo Wurmus
1541c1bb17
gnu: r-rjava: Update to 1.0-11. 
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.

Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
 2024-01-30 15:48:08 +01:00
Ricardo Wurmus
1bb0d6355c
gnu: r-catdata: Update to 1.2.4. 
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.

Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
 2024-01-30 15:41:54 +01:00
Ricardo Wurmus
c3e2892558
gnu: r-r-devices: Update to 2.17.2. 
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.

Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
 2024-01-30 15:41:07 +01:00
Ricardo Wurmus
67c1a96196
gnu: r-igraph: Update to 2.0.1.1. 
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.

Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
 2024-01-30 15:36:03 +01:00
Ricardo Wurmus
788657b62d
gnu: r-antiword: Update to 1.3.3. 
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.

Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
 2024-01-30 15:31:07 +01:00
Ricardo Wurmus
a4e75305e2
gnu: r-sapa: Patch call of dstebz routine. 
* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.

Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
 2024-01-30 15:16:20 +01:00
Ricardo Wurmus
a874d44053
gnu: r-with-tests: Prevent compression of libraries. 
Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29b.

Reported-by: Jonas Freimuth.

* gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress
included libraries like "parallel".

Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d
 2024-01-30 15:16:20 +01:00
Ricardo Wurmus
afe677a623
gnu: r-minimal, r-with-tests: Use G-expressions. 
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.

Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
 2024-01-30 15:16:20 +01:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures. 
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.

Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
 2024-01-30 13:43:32 +02:00
Efraim Flashner
7bf98da98b
gnu: libhdate: Fix pkg-config file. 
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust
the pkg-config file to have the correct prefix.

Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
 2024-01-30 09:25:32 +02:00
Ian Eure
144c95032e
gnu: emacspeak: Update to 59.0. 
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0.
[source]: Switch to git-fetch.

Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2024-01-30 00:40:15 +01:00
Kiran Shila
cdadef6409
gnu: Add python-hdbscan. 
* gnu/packages/machine-learning.scm (python-hdbscan): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I13a78dd795490e6d4a8486741e2d5281605b7bb9
 2024-01-29 22:58:35 +00:00
Troy Figiel
cde0adaacd
gnu: Add python-pyjanitor. 
* gnu/packages/python-science.scm (python-pyjanitor): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-29 21:40:59 +00:00
Troy Figiel
343f4f1d70
gnu: Add python-unyt. 
* gnu/packages/python-science.scm (python-unyt): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-29 21:12:12 +00:00
David Thompson
370b79b4f5
gnu: guile-next: Update to commit fb1f5e2. 
* gnu/packages/guile.scm (guile-next): Update to commit fb1f5e2.

Change-Id: Ia699bf7bf950b8780366146508eec566a738fb80
 2024-01-29 13:38:35 -05:00
Maxim Cournoyer
21e4d6cd69
gnu: mumi: Update to 0.0.8. 
* gnu/packages/mail.scm (mumi): Update to 0.0.8.

Change-Id: I0342f3cfb1b257d7beb25a5d9d0732895f88ec35
 2024-01-29 10:23:15 -05:00
Maxim Cournoyer
1e0ca05c82
gnu: mumi: Update to 0.0.7. 
* gnu/packages/mail.scm (mumi): Update to 0.0.7.

Change-Id: Ia9280574a6774e27f8ab0b4654997b6518c561d2
 2024-01-29 10:16:07 -05:00
Maxim Cournoyer
2c5293afff
gnu: lugaru: Apply patch fixing sound. 
* gnu/packages/patches/lugaru-fix-sound.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (lugaru) [source]: Update source URL.
Apply patch.
[arguments]: Use gexps.
[inputs]: Remove labels and sort.

Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
 2024-01-28 21:03:31 -05:00
Sharlatan Hellseher
9649f5e928
gnu: go-github-com-quic-go-qtls-go1-20: Sort package alphabetically. 
* gnu/packages/golang-crypto.scm (go-github-com-quic-go-qtls-go1-20):
Sort package alphabeticaly to consist the style.

Change-Id: Ib9d1e037dc1172b33a80dc4b40c785b53a2a0586
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
ee76f7c279
gnu: go-github-com-99designs-go-keyring: Adjust inputs. 
This package does not use GPG or password-store internally and is only
used as a dependency for aws-vault.

* gnu/packages/golang-crypto.scm (go-github-com-99designs-go-keyring):
Swap native-inputs to propagated-inputs.
[propagated-inputs]: Remove gnupg and password-store.

Change-Id: If5f57f656402058960df416bad25a76fa1b70718
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
232ed89d43
gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-goconvey): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I19d8db6e3b07e1d165396c0498e328b70b2cc760
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
8882af2572
gnu: go-github.com-smartystreets-assertions: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-assertions): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: Ia90bbe984fe19dd48d9df91364a7ecf2bf8bd37f
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
88fea61aae
gnu: go-github.com-smartystreets-gunit: Move to (gnu packages golang-check). 
* gnu/packages/check.scm (go-github.com-smartystreets-gunit): Move from
here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I7204e118f99064027f0e10838d2b44fee212d21d
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
965f6d74ac
gnu: go-github-com-dvsekhvalnov-jose2go: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-dvsekhvalnov-jose2go): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4c368c9005fd079078726b9165dff380b5092405
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
c94fc0596f
gnu: go-filippo-io-age: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-filippo-io-age): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4eeadfd946910d56d2441a3469967d681b9e8677
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
a704c8a005
gnu: go-github-com-xanzy-ssh-agent: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-xanzy-ssh-agent): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I9eff26086b2b5e9e53e9271a64060f18b6197b3c
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
d71c57a9a6
gnu: go-github-com-99designs-go-keyring: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-99designs-go-keyring): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I7615759c4cdb66a37b492f11d736b1ccfa6b21f2
 2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
1900b75c23
gnu: go-github-com-cespare-xxhash: Move to (gnu packages golang-crypto). 
* gnu/packages/syncthing.scm (go-github-com-cespare-xxhash): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/textutils.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: Ic72cf6c4770cd3f03cc2e27c3455632ee16e7c09
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
bf30f46716
gnu: go-github-com-minio-blake2b-simd: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I096cf86c48b0fdcbf7c5d0b454d45de12018c908
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
9ae4da0018
gnu: go-github-com-operatorfoundation-ed25519: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-operatorfoundation-ed25519):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ia6a28bb8ad138b921e386f3b4d2dee65b43806d1
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
4df431e6cb
gnu: go-github-com-gxed-hashland-keccakpg: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I000004efa349f0d7548003aeecc98c94669662de
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
c8640466e6
gnu: go-github-com-flynn-noise: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-flynn-noise): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ie08a20d57424b0ce5fc10ced2a75b29c8aa3fe7d
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
65a2f158bb
gnu: go-github-com-minio-sha256-simd: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/backup.scm: Add (gnu packages golang-crypto) to used modules.

Change-Id: I4e57a1bee0c7e19a9bb60ce5ff72ccd5e42deea5
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
06e70201f3
gnu: go-github-com-cloudflare-circl: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-cloudflare-circl): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I6d01b67c795d32387e0b77f1ea53d3a4a8f9939b
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
857be8fb47
gnu: go-lukechampine-com-blake3: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-lukechampine-com-blake3): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/uucp.scm: Add (gnu packages golang-crypto) to used modules.

Change-Id: I56dba8380317a0f58f92140889611ac3075af2cf
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
fb63bfb9d5
gnu: go-github-com-btcsuite-btcd-btcec: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Iea48f1ba1edcf9daf567afc3ed1133f0895a0e99
 2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
11f6c41d10
gnu: go-github-com-protonmail-go-crypto: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-protonmail-go-crypto): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I8ab594fcb5b5b7eeec777a177eb7541ed49dba90
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
42d10bd201
gnu: go-github-com-emersion-go-pgpmail: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-emersion-go-pgpmail): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/mail.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: I6e5d284bb045acb30881c79258573c6c79ecc512
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
4e3526db41
gnu: go-github-com-rfjakob-eme: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-rfjakob-eme): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ic38d75fd5d3114e246c08abe881fae62e6f9c6b9
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
7ab2ae0ee7
gnu: go-github-com-aperturerobotics-jacobsa-crypto: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-aperturerobotics-jacobsa-crypto):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/file-systems.scm: Add (gnu packages golang-crypto) to
used modules.

Change-Id: I9562a3a3054b7d361758c5e5984891970f191ada
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
f7ca047b6d
gnu: go-github-com-jcmturner-aescts-v2: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-jcmturner-aescts-v2): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/golang-web.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: Ie8f74e09ae50db4e4b0c9292d049cc46c033d6a6
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
ea912634de
gnu: go-github-com-quic-go-qtls-go1-20: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-quic-go-qtls-go1-20): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I28127466419cd798c926b62d160c6e512e5171bd
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
6dc9ac6461
gnu: go-github-com-gaukas-godicttls: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-gaukas-godicttls): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I19e4a52a213469174ab2a7048abeff6dbf7f715c
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
e946e341df
gnu: go-github-com-marten-seemann-qtls: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-marten-seemann-qtls): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I036e80323ac61d91743e2c42f878ecad06e6c9b9
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
ea9204ab4b
gnu: go-gitlab-com-yawning-edwards25519-extra: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-gitlab-com-yawning-edwards25519-extra):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I9c4aef2a0b58c482f838cc6a3a9e443dc05629b7
 2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
f54ec8a59b
gnu: go-filippo-io-edwards25519: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-filippo-io-edwards25519): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/password-utils.scm: Add (gnu packages golang-crypto) to
used modules.

Change-Id: I11769b8b212bf4cbe98fe10181c0a2a479c599df
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
2dd97bd8c5
gnu: go-github-com-refraction-networking-utls: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-refraction-networking-utls):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I5d27ca70b36e8fae044e54927caab9ffec23347e
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
6a85e9a269
gnu: go-github-com-marten-seemann-chacha20: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-marten-seemann-chacha20): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I25bc41e79e119f7a91510d5b7c55466ad7073a5c
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
f4e1a37903
gnu: go-github-com-aead-chacha20: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-aead-chacha20): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I97254ae17ba12327649d26f154396c42ed07b716
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
58c9683d81
gnu: go-github-com-libp2p-go-libp2p-peer: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I7c372e17f03c9dc18027572582aa8416d59c2cba
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
540ac7cd5e
gnu: go-github-com-shadowsocks-go-shadowsocks2: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-shadowsocks-go-shadowsocks2):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Iae18376cae074b6ffb2d5b1b27b6161f4712dfdb
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
7c4e22b4ad
gnu: go-github-com-libp2p-go-libp2p-crypto: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I407bec9b36d61475b2a555643f8bc89b623452e9
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
91c79f376a
gnu: go-github-com-riobard-go-bloom: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-riobard-go-bloom): Move from
here ...
* gnu/packages/golang-crypto.go: ... to here.

Change-Id: I5ec63d8d9d90690348f494cb538ec2c4587a7557
 2024-01-28 23:21:03 +00:00
Sharlatan Hellseher
547eec541d
gnu: go-github-com-multiformats-go-multihash: Move to (gnu packages golang-crypto). 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/ipfs.scm: Add (gnu packages golang-crypto) to used modules.
* gnu/packages/golang.scm: ... as above.

Change-Id: I153be971141cf60390d03bf589c5121d9554cf9a
 2024-01-28 23:21:02 +00:00
Sharlatan Hellseher
0493c9cb19
gnu: go-github-com-pquerna-cachecontrol: Move to (gnu packages golang-web). 
* /gnu/packages/golang.scm (go-github-com-pquerna-cachecontrol): Move
from here ...
* /gnu/packages/golang-web.scm: ... to here.

Change-Id: I0f25ffcdf142a3676e0e1fa61408cb9411326fb6
 2024-01-28 23:21:02 +00:00
Sharlatan Hellseher
e3942c7589
gnu: Add (gnu packages golang-crypto) module. 
* gnu/packages/golang-crypto.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-crypto.scm scope.

Change-Id: I92a110f31a74c5a54c59ee2a0f17373915be1b35
 2024-01-28 23:21:02 +00:00
Sharlatan Hellseher
77a07a968f
gnu: python-pyamg: Regenerate bundled files. 
* gnu/packages/python-science.scm (python-pyamg) [source]: Delete
auto-generated files.
[arguments] <#:phases>: Add 'amg-core-bind-them phase to
re-generate *_bind.cpp files deleted in snippet.
[native-inputs]: Add python-cppheaderparser and python-pyyaml.
[description]: Improve style, omit implementation details.

Change-Id: I6f68914cd912e6f4592e51c21b129847e73be847
 2024-01-28 22:44:30 +00:00
Sharlatan Hellseher
ae77d94839
gnu: Add python-cppheaderparser. 
* gnu/packages/python-xyz.scm (python-cppheaderparser): New variable.

Change-Id: I3c57c31a0b63212e43e1ab387b5d329c04ed0e31
 2024-01-28 22:44:30 +00:00
Sharlatan Hellseher
42c7b50e23
gnu: python-trimesh: Enable tests. 
* gnu/packages/python-science.scm (python-trimesh): Enable tests and
apply new package style.
[source]: Use git checkout which has working test suit.
[arguments] <#:test-flags>: Disable tests requiring optional Python
modules.
[propagated-inputs]: Add python-chardet, python-colorlog python-httpx
python-jsonschema python-lxml python-networkx python-pillow
python-requests python-rtree python-scipy python-setuptools
python-shapely python-sympy and python-xxhash.

Change-Id: I1aa363053c2d736bc44b8f9071c637256cc2d952
 2024-01-28 22:39:22 +00:00
Sharlatan Hellseher
a01afbd300
gnu: python-trimesh: Update to 4.0.10. 
* gnu/packages/python-science.scm (python-trimesh): Update to 4.0.10.
[build-system]: Swap to pyproject-build-system.

Change-Id: I757b4c27db9969d42021434883a057debbbc83fd
 2024-01-28 22:38:05 +00:00
Sharlatan Hellseher
2281521872
gnu: openorienteering-mapper: Remove input labels. 
* gnu/packages/geo.scm (openorienteering-mapper) [inputs]: Remove input
labels.
[native-inputs]: As above.

Change-Id: Ice3218e5fc6fa07879f61467cc14a4bd2fb950f6
 2024-01-28 22:31:19 +00:00
Sharlatan Hellseher
89513b8ed3
gnu: python-haversine: Simplify package. 
* gnu/packages/geo.scm (python-haversine): Simplify package.
[build-system]: Swap to pyproject-build-system.

Change-Id: Icf2e43a25b9bda37df1ee57416884939aca7a9c5
 2024-01-28 22:31:19 +00:00
Sharlatan Hellseher
ec2fed9f5b
gnu: python-pyshp: Simplify package. 
* gnu/packages/geo.scm (python-pyshp): Simplify package.
[build-system]: Swap to pyproject-build-system.

Change-Id: I4a7429396e5a1b77cfbde1ce294f9f975153d1ef
 2024-01-28 22:31:19 +00:00
Patrick Noll
39c490b1ca
gnu: Add python-ogr2osm. 
* gnu/packages/geo.scm (python-ogr2osm): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Id083d89dd05a9e1cdeca500daff5fab872fa15b4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-28 22:31:18 +00:00
Troy Figiel
39e6994081
gnu: python-osmnx: Reformat with guix style. 
* gnu/packages/geo.scm (python-osmnx): Reformat with guix style.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-28 22:31:18 +00:00
Troy Figiel
df33198cc2
gnu: python-osmnx: Update to 1.8.1. 
* gnu/packages/geo.scm (python-osmnx): Update to 1.8.1.
[arguments]<#:test-flags>: Add test_geocoder and test_features to ignored
tests. Remove test_geocode_to_df and test_geometries from ignored tests.
[propagated-inputs]: Remove python-pyproj and python-rtree.
[native-inputs]: Add python-hatchling, remove python-numpy.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-28 22:31:18 +00:00
Rostislav Svoboda
65dc2d40cb
gnu: fish: Update to 3.7.0. 
* gnu/packages/shells.scm (fish): Update to 3.7.0.

Change-Id: I10f6dedaed31f31735ebd90cbcb29621f43de14a
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-28 22:50:49 +01:00
Giacomo Leidi
4802adbbf0
gnu: dynaconf: Update to 3.2.4. 
* gnu/packages/patches/dynaconf-unvendor-deps.patch: Update accordingly.
* gnu/packages/python-xyz.scm (dynaconf): Update to 3.2.4;
[source]<url>; https://github.com/rochacbruno/dynaconf now permanently
redirects to https://github.com/dynaconf/dynaconf ;
<snippet>: update unvendoring and lower coverage quality gate
for unit tests;
[build-system]: switch to pyproject-build-system;
[arguments]<test-flags>: disable tests that require Click 7 instead of
Click 8;
<phases>: comply with #:test-flags argument from pyproject-build-system;
[propagated-inputs]: add python-tomli.

Change-Id: I96597ec39d7aa2d3c3c169147640de19eaefe0b4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-28 22:50:49 +01:00
Attila Lendvai
dde76db33f
services: shepherd: Add respawn-limit and respawn-delay. 
* gnu/services/shepherd.scm (<shepherd-service>): Add respawn-limit and
respawn-delay.
(shepherd-service-file): Emit the two values into the shepherd service
constructor form.

Change-Id: I54408e8fb4bcc0956d9610771bf5c566fdc2914c
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-28 22:50:49 +01:00
Giacomo Leidi
2f67528edd
home: Add home-dotfiles-service. 
* gnu/home/service/dotfiles.scm: New file;
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* po/guix/POTFILES.in: Add it.
* doc/guix.texi (Essential Home Services): Document it.

Change-Id: I6769169cfacefc3842faa5b31bee081c56c28743
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-28 22:50:49 +01:00
Ludovic Courtès
68b2a19c20
home: services: Add missing import. 
* gnu/home/services.scm: Import (srfi srfi-34) for ‘raise’.

Change-Id: Ib0e8d134f3953c78a09b623f697e7e5b251d5611
 2024-01-28 22:50:48 +01:00
Liliana Marie Prikler
08ed3ec64e
gnu: renpy: Fix hashes. 
* gnu/packages/game-development.scm (python-pygame-sdl2, python-renpy):
Redownload sources from upstream and use the provided hashes.

Fixes: Broken hashes for Ren'py <https://bugs.gnu.org/68644#20>
 2024-01-28 18:34:30 +01:00
Charles
567aa4c7aa
gnu: Add cl-charje.documentation. 
* gnu/packages/lisp-xyz.scm (sbcl-charje.documentation,
  cl-charje.documentation, ecl-charje.documentation): New variables.

Change-Id: I635af17de831ccacfb7caa2cfcf84e9da694a3ba
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 17:23:28 +01:00
Michal Atlas
eea35c32dd
gnu: Add cl-qvm. 
* gnu/packages/quantum.scm (cl-qvm, sbcl-qvm): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I1958fedab600df490f99961648cca49367ea29a6
 2024-01-28 17:15:34 +01:00
Michal Atlas
9d70cb8c9a
gnu: Add cl-quil. 
* gnu/packages/quantum.scm (cl-quil, sbcl-cl-quil): New variables.

Change-Id: I7777f569cbb28737d25dd1e990a8e8aeb2c251b7
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 16:59:13 +01:00
Michal Atlas
78bdf4f999
gnu: Add cl-rpcq. 
* gnu/packages/quantum.scm: New file.
  (cl-rpcq, sbcl-rpcq): New variables.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register "quantum.scm".

Change-Id: Ic893ad22ffb7a3bf9aa5e841fcf4c14bf3a23b2f
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 16:15:41 +01:00
Michal Atlas
dce2515eb5
gnu: Add cl-magicl. 
* gnu/packages/lisp-xyz.scm (cl-magicl, sbcl-magicl): New variables.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: Ib243badfd37369f50e9c86b47ebc2872ff25cfd5
 2024-01-28 15:47:31 +01:00
Michal Atlas
51e9f4bd99
gnu: Add cl-permutation. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-permutation, ecl-cl-permutation,
  cl-permutation): New variables.

Change-Id: Ib5cf64fa1311e76bcf710d8f5f673226a3e410b6
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 14:31:10 +01:00
Michal Atlas
fe26fec331
gnu: Add cl-messagepack. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-messagepack, ecl-cl-messagepack,
  cl-messagepack): New variables.

Change-Id: I529d438dc5b3031542b3825697581726abbac58f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 14:18:20 +01:00
Michal Atlas
4795a856dd
gnu: Add cl-priority-queue. 
* gnu/packages/lisp-xyz.scm (sbcl-priority-queue, ecl-priority-queue,
  cl-priority-queue): New variables.

Change-Id: If0491c24ec009a51787dbd3abb62006ae28c7f92
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 14:09:24 +01:00
Michal Atlas
fcdea10c66
gnu: Add cl-grnm. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-grnm, ecl-cl-grnm, cl-grnm): New
  variables.

Change-Id: I6cba8f53c8fff2323b65224a7f4107e932fde2fb
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 13:59:09 +01:00
Michal Atlas
b0aa90afbb
gnu: Add cl-metering. 
* gnu/packages/lisp-xyz.scm (sbcl-metering, ecl-metering, cl-metering): New
  variables.

Change-Id: I7bc9ec158f7c3eb97ba0386ee8dffeeca2274b31
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 13:45:41 +01:00
Michal Atlas
661ed47475
gnu: Add cl-alexa. 
* gnu/packages/lisp-xyz.scm (sbcl-alexa, ecl-alexa, cl-alexa): New variables.

Change-Id: I3d440cee8e92fe3818a41ab7c9a70bb7f9e0cd42
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 13:35:32 +01:00
Michal Atlas
9132d7fa31
gnu: Add cl-syslog. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-syslog, ecl-cl-syslog, cl-syslog): New
  variables.

Change-Id: I152ce685bc65f412d8e7912e3520e264d9801da0
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 13:26:50 +01:00
Michal Atlas
b5a55ba5e9
gnu: Add cl-interface. 
* gnu/packages/lisp-xyz.scm (sbcl-interface, ecl-interface, cl-interface): New
  variables.

Change-Id: Ia68ca7728bdd9798b93b07ecc3363d04d7d4ecea
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2024-01-28 13:13:59 +01:00
Morgan Smith
963a21bedc
gnu: emacs-ebdb: Do not propagate emacs-org-roam. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Move emacs-org-roam from
propagated-inputs to inputs.  This is an optional dependency that would only
be used if the user is already using emacs-org-roam.

Change-Id: I012962a6f82c1242d59a152ab6030babec61ae45
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-28 08:13:17 +01:00
Tom Willemse
20c9af66eb
gnu: Include the notmuch logo in emacs-notmuch. 
* gnu/packages/mail.scm (emacs-notmuch): Include notmuch-logo.svg

Change-Id: Iaae79717d11d7f91cdef3f7470c290489e2b397a
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-01-28 08:13:17 +01:00
Liliana Marie Prikler
2bfe8e95ef
gnu: python-renpy: Update to 8.2.0. 
* gnu/packages/game-development.scm (python-renpy): Update to 8.2.0.
 2024-01-28 08:13:17 +01:00
Liliana Marie Prikler
9d53c236a6
gnu: python-pygame-sdl2: Update to 2.1.0+renpy8.2.0. 
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0+renpy8.2.0.
 2024-01-28 08:13:17 +01:00
Liliana Marie Prikler
6a6fa2ba38
gnu: capypdf: Update to 0.8.0. 
* gnu/packages/pdf.scm (capypdf): Update to 0.8.0.
 2024-01-28 08:13:16 +01:00
Liliana Marie Prikler
edaa752321
gnu: immer: Update to 0.8.1. 
* gnu/packages/cpp.scm (immer): Update to 0.8.1.
[source]: Drop modules and snippet.
[arguments]: Add #:configure-flags to disable -Werror.
 2024-01-28 08:13:16 +01:00
Efraim Flashner
2d6b43fd03
gnu: dmd: Limit supported systems. 
* gnu/packages/dlang.scm (dmd)[supported-systems]: New field.

Change-Id: Iba50d2f832a42876fc4e4418593c3c2feacdb3f8
 2024-01-28 08:29:57 +02:00
Wilko Meyer
73d8e5a935
gnu: linux-libre 4.19: Update to 4.19.306. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.306.
(linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I8605a7544c18686d4113f365bbb43c8b5fe7ce7c
 2024-01-27 20:11:38 -05:00
Wilko Meyer
042869124b
gnu: linux-libre 5.4: Update to 5.4.268. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.268.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I4c7348427a5f2219c85d7c596bff55e944004520
 2024-01-27 20:11:38 -05:00
Wilko Meyer
a23342e11a
gnu: linux-libre 5.10: Update to 5.10.209. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.209.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ic5f80481d3eb0d4cada0c4ead247db07351a0908
 2024-01-27 20:11:38 -05:00
Wilko Meyer
536a3d5f2f
gnu: linux-libre 5.15: Update to 5.15.148. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.148.
(linux-libre-5.15-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ia8621c8499b9c4f96ca052c4995be1cd52a4ca9a
 2024-01-27 20:11:37 -05:00
Wilko Meyer
139e2362f6
gnu: linux-libre 6.1: Update to 6.1.75. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.75.
(linux-libre-6.1-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: If0d734998b173862aac5273957abb2b7d5d26129
 2024-01-27 20:11:37 -05:00
Wilko Meyer
63d7e933ae
gnu: linux-libre 6.6: Update to 6.6.14. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.14.
(linux-libre-6.6-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ie0ec358b7a7d2511db3a1b8f7df175947fc5091a
 2024-01-27 20:11:37 -05:00
Wilko Meyer
1ab8989cad
gnu: linux-libre 6.7: Update to 6.7.2. 
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.2.
(linux-libre-6.7-pristine-source, deblob-scripts-6.7): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I29c38851a87c8b3ab7f641c5bbca7e99ee96ff13
 2024-01-27 20:11:33 -05:00
Efraim Flashner
dc8aa52517
gnu: qtwebengine: Update to 6.5.3. 
* gnu/packages/qt.scm (qtwebengine): Update to 6.5.3.

Change-Id: I0a617a548e1b3b6f1250c507959857ff2086f167
 2024-01-27 18:30:20 +02:00
Nicolas Goaziou
836d608a56
gnu: texlive-bibexport: Fix Bash shebang. 
<https://issues.guix.gnu.org/68717>

* gnu/packages/tex.scm (texlive-bibexport)[arguments]<#:phases>: Fix Bash
shebang in generated script.

Change-Id: Idc6192495994654e6d0b0b2ca2b15e62de1ee9ae
 2024-01-27 15:07:39 +01:00
Maxim Cournoyer
3821ee62cc
gnu: mumi: Update to 0.0.6. 
* gnu/packages/mail.scm (mumi): Update to 0.0.6.

Change-Id: Ie98c2f72d916318aa1f43384a3286ae80ae3655a
 2024-01-26 23:09:55 -05:00
Troy Figiel
0f646b0ec2
gnu: Add python-sphinx-issues. 
* gnu/packages/sphinx.scm (python-sphinx-issues): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-26 22:14:43 +00:00
Artyom Bologov
d9d97e26c1
gnu: Add guile-lmdb. 
* gnu/packages/guile-xyz.scm (guile-lmdb): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-26 22:02:19 +00:00
Maxim Cournoyer
41e95150a0
gnu: qt-creator: Add support for demangling D and Rust symbols. 
* gnu/packages/qt.scm (qt-creator) [inputs]: Add d-demangler and
rust-rustc-demangle-capi-0.1 (where supported).

Change-Id: I13122c0d148f283268d59919ade1459b5c7012a5
 2024-01-26 15:38:39 -05:00
Maxim Cournoyer
28d53c0241
gnu: Add d-demangler. 
* gnu/packages/dlang.scm (d-demangler): New variable.

Change-Id: Ic1dc8fb8adc1b4be859552e4add074a35bdfc6d0
 2024-01-26 15:38:39 -05:00
Maxim Cournoyer
b923b31b38
gnu: Add dmd. 
* gnu/packages/dlang.scm (dmd-bootstrap, dmd): New variables.

Change-Id: I53e00a429e2084a392341ef1bc7ea63f0fcaaab4
 2024-01-26 15:38:39 -05:00
Maxim Cournoyer
a99a91ff35
gnu: gdmd: Replace gdc-11 with gdc alias. 
* gnu/packages/dlang.scm (gdmd) [inputs]: Replace gdc-11 with gdc.

Change-Id: Ie035bb79c128c266cee85cf11bf79216f4f8b454
 2024-01-26 15:38:38 -05:00
Maxim Cournoyer
c6bec1ca42
gnu: Add gdc alias. 
* gnu/packages/gcc.scm (gdc): New variable.

Change-Id: I38447e46ffba44d3a9d3757d34fe9ff081803457
Reviewed-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-26 15:38:34 -05:00
Edward Wilson
8ae8b9804f
gnu: emacs-citar: Fix autoloads and restore tests. 
The default build-system emacs doesn't properly expand cl-lib macros when
compiling autoloads. This patch changes the `#:emacs` build argument, fixing a
present bug (reproducible by requiring citar-autoloads in a minimal
environment). This change also allows the validation of compiled autoloads to
succeed, hence the test phase is restored.

* gnu/packages/emacs-xyz.scm (emacs-citar): Change build-system emacs and
restore tests

Change-Id: Id56de922e5220383f8c5015a01e39b4aa2ea8cfb
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-26 19:39:31 +03:00
Arun Isaac
4671925528
gnu: ccwl: Update to 0.3.0. 
* gnu/packages/bioinformatics.scm (ccwl): Update to 0.3.0.
[arguments]: Add patch-more-source-shebangs phase.

Change-Id: Ic7926d04c28eeafd799deba5e817574663431db8
 2024-01-26 15:31:56 +00:00
Andreas Enge
cdf1d7dded
gnu: arb: Deprecate package. 
* gnu/packages/algebra.scm (arb): Deprecate in favor of flint, of which
it is now a part.

Change-Id: I02ee2110e77c582b8daf70502f7092eba7c44547
 2024-01-26 10:09:35 +01:00
Andreas Enge
ff9d8420cf
gnu: python-flint: Update to 0.5.0 and build with flint@3. 
* gnu/packages/patches/python-flint-includes.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.
* gnu/packages/algebra.scm (python-flint): Update to 0.5.0.
[source]: Drop patch.
[inputs]: Drop arb.
[native-inputs]: Use python-cython-3.

Change-Id: I5fa9b201efff76e16f957aee0ebcd453ea823e69
 2024-01-26 10:09:35 +01:00
Andreas Enge
f027a6c22c
gnu: s7: Compile with flint@3. 
* gnu/packages/patches/s7-flint-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register file.
* gnu/packages/lisp.scm (s7-bootstrap)[source]: Add patch.
[inputs]: Remove arb.

Change-Id: I06bac9d850977b8ee769e629f1b64411a8dc3247
 2024-01-26 10:09:35 +01:00
Andreas Enge
619417ab23
gnu: pynac: Remove package. 
The package was integrated into the Sagemath source code in 2021.

* gnu/packages/sagemath.scm (pynac): Remove variable.

Change-Id: I5c6a90ed1747852d0dc4e73b79ce9daa34d876c7
 2024-01-26 10:09:35 +01:00
Andreas Enge
25690a7ce1
gnu: flint: Update to 3.0.1. 
* gnu/packages/algebra.scm (flint): Update to 3.0.1.
  [arguments]: Remove obsolete phase additions.

Change-Id: Iebac9d3a0b1e19147df9402d522c55cb168148d7
 2024-01-26 10:09:34 +01:00
Clément Lassieur
fdffaa2256
gnu: torbrowser: Update to 13.0.9. 
* gnu/packages/gnuzilla.scm: Stop exporting ‘all-mozilla-locales’.
* gnu/packages/tor.scm (mozilla-locale): New procedure copied from
gnuzilla.scm.
(mozilla-locales): New macro adapted from gnuzilla.scm.
(%torbrowser-locales): Add sha256 and changeset for each locale and update
them all.
(%moz-build-date): Update to 20240123154553.
(%torbrowser-version): Update to 13.0.9.
(%torbrowser-firefox-version): Update to 115.7.0esr-13.0-1-build1.
(translation-base-browser): Update to cbd9b6c.
(translation-tor-browser): Update to 767ab51.
(torbrowser)[arguments]: Adapt to new ‘%torbrowser-locales’ format.

Change-Id: I774db714f3df53adc5be37109126bde5fab1a9a6
 2024-01-26 01:17:16 +01:00
Sharlatan Hellseher
9b657bab84
gnu: Sort inputs in (gnu packages books) alphabetically. 
* gnu/packages/books.scm: Sort #:use-modules and inputs alphabetically
to ease maintenance.

Change-Id: Ifdd94277a51fb34e740398bd962b03098a775572
 2024-01-25 21:34:37 +00:00
Artyom V. Poptsov
d1951037b4
gnu: book-sparc: Update to 2.0.0. 
* gnu/packages/books.scm (book-sparc): Update to 2.0.0.
  [inputs]: Add texlive-chngcntr.

Change-Id: Ief8c8c697e30fbe6f483fdc49969714ca64480fe
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-25 21:34:27 +00:00
Ricardo Wurmus
d6c394d6a1
gnu: python-pyscss: Update to 1.4.0. 
* gnu/packages/python-web.scm (python-pyscss): Update to 1.4.0.
[source]: Remove snippet.
[arguments]: Remove; enable tests.

Change-Id: I954baf228e6e343b616b6a0eb15742920873f31d
 2024-01-25 20:49:35 +01:00
Ricardo Wurmus
05fbafb6a4
gnu: Add python-huggingface-hub. 
* gnu/packages/python-web.scm (python-huggingface-hub): New variable.

Change-Id: I87f668a1ad170fa229902aae5be94e8d4751f38d
 2024-01-25 20:49:35 +01:00
Hilton Chain
ed7eb108e5
gnu: libcgroup: Update to 3.1.0. 
* gnu/packages/linux.scm (libcgroup): Update to 3.1.0.
[arguments]<#:configure-flags>: Disable systemd.

Change-Id: Iabd8577243b741380fa0d69811fcbf8ad551ddb2
 2024-01-25 23:49:37 +08:00
Hilton Chain
0252d69f91
gnu: libcgroup: Adjust package style. 
* gnu/packages/linux.scm (libcgroup)[source]<uri>: Remove use of ‘home-page’.

Change-Id: I93f22223a01b253b8b1cd7deea90e7f05736862f
 2024-01-25 23:49:31 +08:00
Denis 'GNUtoo' Carikli
06221e910a
gnu: Add aflplusplus. 
* gnu/packages/debug.scm (aflplusplus): New variable.

Change-Id: Ibda36187e839d5f533d461444db25a7ba5567f0f
Modified-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-01-25 23:48:49 +08:00
Ricardo Wurmus
250477d896
gnu: Add python-gh-md-to-html. 
* gnu/packages/python-xyz.scm (python-gh-md-to-html): New variable.

Change-Id: I8a7f62000eec0636d2c1114c53c852fa136576b1
 2024-01-25 15:13:52 +01:00
Ricardo Wurmus
72a758bcd3
gnu: python-pyro-ppl: Skip one more test. 
* gnu/packages/machine-learning.scm (python-pyro-ppl)[build-system]: Use
pyproject-build-system.
[arguments]: Remove custom 'check phase and replace with #:test-flags; disable
test_sample tests.

Change-Id: I058892451b9e5c96b077fae426a6649ce16f54c5
 2024-01-25 15:13:51 +01:00
Ricardo Wurmus
6623a8151a
gnu: Add music. 
* gnu/packages/bioinformatics.scm (music): New variable.

Change-Id: Iba5c986a0d3143118d4640d3ee9d4dae8119163f
 2024-01-25 15:13:51 +01:00
Andreas Enge
5111915e6a
gnu: s7: Update to 24.1-0.23a64fa. 
* gnu/packages/lisp.scm (s7-bootstrap): Update to 24.1-0.23a64fa.

Change-Id: I5853c2f4bb7f2f8c9c34fd8f3d358d94d287d14b
 2024-01-25 12:01:58 +01:00
Efraim Flashner
eb3d1d65eb
gnu: qtwebengine: Build with clang-15. 
* gnu/packages/qt.scm (qtwebengine)[native-inputs]: Replace clang-14
with clang-15, lld-as-ld-wrapper with lld-as-ld-wrapper-15.

Change-Id: Iefecc519d5bf1edc968225454339656af4592170
 2024-01-25 12:18:26 +02:00
Efraim Flashner
f396873dde
gnu: ldc: Build with llvm-15. 
* gnu/packages/dlang.scm (ldc-bootstrap)[native-inputs]: Replace llvm-14
with llvm-15, lld-wrapper-14 with lld-wrapper-15.
(ldc)[native-inputs]: Replace clang-14 with clang-15.

Change-Id: Iaa2023c7fb8a515c50a141d0157d9023cfb5c623
 2024-01-25 12:18:26 +02:00
Ricardo Wurmus
891f97d260
gnu: r-bayesfactor: Update to 0.9.12-4.7. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.7.

Change-Id: I946e370397d5ca7d58f9b61fd2aaebe988ece43c
 2024-01-25 09:43:05 +01:00
Ricardo Wurmus
ed64ab4c9a
gnu: r-cowplot: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.3.

Change-Id: I06bc9f67a9911ef927d31f7d33b4e59c2f25e02b
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
d63c2ee69e
gnu: r-r-oo: Update to 1.26.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.26.0.

Change-Id: Ic85ada2a8f72202641cfc75f73344c23bc7d152a
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
a73bf3375b
gnu: r-segmented: Update to 2.0-2. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-2.

Change-Id: I4753d69bf5c38fec7d37acb3b214652de4be3d0c
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
b029555e56
gnu: r-ggh4x: Update to 0.2.8. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.8.

Change-Id: I9757f1168761b5f9d820ba43bfffcea7d4979e66
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
44d50d1b08
gnu: r-consrank: Update to 2.1.4. 
* gnu/packages/cran.scm (r-consrank): Update to 2.1.4.

Change-Id: Icf447178150fe8bd2d8c9cce344ef7cebc080c14
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
cd635c19a7
gnu: r-directlabels: Update to 2024.1.21. 
* gnu/packages/cran.scm (r-directlabels): Update to 2024.1.21.

Change-Id: I4efad0c947bf02083459653e800b68e8a26acbbf
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
85ac63bd71
gnu: r-rainbow: Update to 3.8. 
* gnu/packages/cran.scm (r-rainbow): Update to 3.8.

Change-Id: Ice3e294dd35979a1e7b0bb0cdfbd116d6023f0e2
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
cf3a5f51bd
gnu: r-r-filesets: Update to 2.15.1. 
* gnu/packages/cran.scm (r-r-filesets): Update to 2.15.1.

Change-Id: I65b0ead73e5c0b48eb4717d7a35796a5f6ca0c5f
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
353de1f8de
gnu: r-r-huge: Update to 0.10.1. 
* gnu/packages/cran.scm (r-r-huge): Update to 0.10.1.

Change-Id: Ia7a7cceefd816a36fd8c33866e379c5780088c42
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
bd65f7b6af
gnu: r-kableextra: Update to 1.4.0. 
* gnu/packages/cran.scm (r-kableextra): Update to 1.4.0.
[propagated-inputs]: Remove r-glue, r-rvest, and r-webshot.

Change-Id: I54ae752da0b802b0f322c8762d73c3d1519103ee
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
aea3c44027
gnu: r-rcppannoy: Update to 0.0.22. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.22.

Change-Id: I87fde0568881276bec612ae99e95ea5c9c70a3f0
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
b634edeaab
gnu: r-emmeans: Update to 1.10.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.10.0.

Change-Id: I32a041b81e528b8b07068f748a7b9f8186a34a89
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
c12bc9a581
gnu: r-ggridges: Update to 0.5.6. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.6.

Change-Id: Ic0c746f31294f8a4e9668eff6ae7d02c27f64f1c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
6064758fdf
gnu: r-conos: Update to 1.5.1. 
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.1.

Change-Id: If05dea04f6abb3c78504ab46aa052aeb288a7c8c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
ee805f86fe
gnu: r-tidyr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.1.

Change-Id: I4b97cbcaad562070440d692a1a5652eb15123516
 2024-01-25 09:43:02 +01:00
Vinicius Monego
ffa73f8ef2
gnu: python-opentsne: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 1.0.1.

Change-Id: Ic71c3622e9408a21c5bade00228a9af5320c6dce
 2024-01-24 20:02:55 -03:00
Vinicius Monego
b6e3527aae
gnu: python-pymc: Update to 5.10.3. 
* gnu/packages/statistics.scm (python-pymc): Update to 5.10.3.

Change-Id: I7c30e5a487f97415ef3bf7f9c514a5de54dcd611
 2024-01-24 20:02:51 -03:00
Vinicius Monego
90b80796bf
gnu: python-arviz: Update to 0.17.0. 
* gnu/packages/statistics.scm (python-arviz): Update to 0.17.0.

Change-Id: I93112c570010165c888b5e303a3c82d80cda3016
 2024-01-24 20:02:51 -03:00
Vinicius Monego
a4c9766108
gnu: python-xarray-einstats: Update to 0.7.0. 
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.

Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
 2024-01-24 20:02:51 -03:00
Vinicius Monego
2836325c2b
gnu: python-scikit-rf: Update to 0.31.0. 
* gnu/packages/engineering.scm (python-scikit-rf): Update to 0.31.0.

Change-Id: I5dc8891530d7a7e55a899cfde4f72aecc83ec044
 2024-01-24 20:02:47 -03:00
Roman Scherer
8bee6bb9aa
gnu: guile-fibers: Disable failing tests on aarch64. 
* gnu/packages/guile-xyz.scm (guile-fibers)[arguments]: In
‘disable-some-tests’ phase, disable failing tests on aarch64.

Change-Id: Id05b516a659f641cc7ef01efdaf6cd1f2c735800
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
96c2186a08
services: cuirass: Depend on ‘user-processes’. 
* gnu/services/cuirass.scm (cuirass-shepherd-service)
(cuirass-remote-worker-shepherd-service): Add ‘user-processes’ to the
‘requirement’ field.

Change-Id: Iba087bfd8aaa9b1ef54bcc77d855adc136e18644
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
94abfccde9
services: cuirass: Add ‘configuration’ action. 
* gnu/services/cuirass.scm (cuirass-shepherd-service): Add ‘actions’
field to ‘cuirass’ Shepherd service.

Change-Id: I7feaeebcb89fcd9a1fdbc63f0337e0d63b697793
 2024-01-24 23:28:37 +01:00
Sharlatan Hellseher
8f86cbd5e9
gnu: libnova: Use G-Expressions. 
* gnu/packages/astronomy.scm (libnova): Adjust package style by applying
G-Expressions and fix indention.
[arguments]<#:phases>: Remove trailing #f from lambda.

Change-Id: I63d239464fd3cb166449ef8904b5fd72326cb853
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
f74a8e8ac0
gnu: stackistry: Use G-Expressions. 
* gnu/packages/astronomy.scm (stackistry): Update package style by using
G-Expressions. Apply indention.
[arguments]<#:tests?>: Use it instead of deleting check phase.
<#:phases>: Remove trailing #f from each lambda.

Change-Id: I30f3906719713f0d47dc2049564bc2691ba3cd5d
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
6431cf121d
gnu: libpasastro: Use G-Expressions. 
* gnu/packages/astronomy.scm (libpasastro):
[supported-systems]: Add it.
[arguments]: Rewrite using G-expressions.
[description]: Remove trailing \n.

Change-Id: Ic0e79394be1110566f5481963fdd167985c1a770
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
e586c8189b
gnu: python-stsynphot: Fix build. 
* gnu/packages/astronomy.scm (python-stsynphot): Fix build.
[native-inputs]: Add python-semantic-version.

Change-Id: I72b086c6a0461293c2191e39e25b3c803279bf60
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
884bddc26c
gnu: python-skyfield: Update to 1.47. 
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.47.
[inputs]: Remove python-certifi, python-jplephem, python-numpy, and python-sgp4.
[propagated-inputs]: Add python-certifi, python-jplephem, python-numpy, and python-sgp4.

Change-Id: If5a9a47077edcebe83449c4c54a49189dea61c5a
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
324bc1ea8f
gnu: python-tweakwcs: Update to 0.8.6. 
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.6.

Change-Id: Icfbb7680a5e208d68f5b8da3fa3fdd35a358ecf5
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a57fa5a8ce
gnu: python-synphot: Enable more options. 
* gnu/packages/astronomy.scm (python-synphot) [propagated-inputs]: Add
python-dust-extinction and python-specutils. Sort alphabetically.
[native-inputs]: Add python-semantic-version.

Change-Id: If4dbcf2765508d7c7e2b7580193367ed2d038b6f
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
fb4293c4ec
gnu: Add python-specutils. 
* gnu/packages/astronomy.scm (python-specutils): New variable.

Change-Id: Ic2ee65eb8a6fb7e5fe0d0d086541d47eef8bd1ad
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
4d00cf5d78
gnu: Add python-dust-extinction. 
* gnu/packages/astronomy.scm (python-dust-extinction): New variable.

Change-Id: I6fecfede0c347d032555b8f81bcf4f7072fc1129
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a75c4114f8
gnu: Add python-ndcube. 
* gnu/packages/astronomy.scm (python-ndcube): New variable.

Change-Id: I94087c7e02ca678531bcbf4eb3d035e2647768fd
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
5d390495ab
gnu: python-sunpy: Update to 5.1.1. 
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.1.
[arguments]<#:test-flags>: Ignore test_spice.py as SpicePy is not packed
yet and python-spicepy is optional.
<#:phases>{prepare-test-environment}: Add pytest.ini configuration file
to fix tests.

Change-Id: Icfb05ce29b376a05291e9f7020170e389d0081d2
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
8084df8b10
gnu: python-stcal: Update to 1.5.2. 
* gnu/packages/astronomy.scm (python-stcal): Update to 1.5.2.
[propagated-inputs]: Add python-asdf-3.0 and python-gwcs.
[native-inputs]: Remove python-cython; add python-cython-3 and python-semantic-version.

Change-Id: I8b6a90a3c0b75ee43de4c7069950a4f9578ea825
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
4a68e6aabf
gnu: python-pyvo: Update to 1.5. 
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.
[propagated-inputs]: Remove python-mimeparse.

Change-Id: I4d3e19b95c034cf3c82cec55a198d9a927934971
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
01b0ed5a6d
gnu: python-drms: Update to 0.7.1. 
* gnu/packages/astronomy.scm (python-drms): Update to 0.7.1.

Change-Id: I3744efa8c87db7fcb743bf8dca4ec6a437a82951
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
e5923f4f3c
gnu: python-crds: Update to 11.17.14. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.14.
[description]: Indent it and apply TexInfo style on URLs.

Change-Id: Icd298578cf685cfbc454d5b16b9f89c6d050b93a
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
25b69fcac8
gnu: libxisf: Update to 0.2.11. 
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.11.

Change-Id: I79242d42af3db660c46be0baf05e11ea7ac680f7
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
eb4cee3a9c
gnu: gpredict: Update home-page and description. 
* gnu/packages/astronomy.scm (gpredict)[home-page]: Update it according
to project's README.
[description]: Add feature detailed list.

Change-Id: If5edc6e50796c7753ac47fac082c267145723361
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
b4f638879d
gnu: indi-2.0: Update to 2.0.5. 
* gnu/packages/astronomy.scm (indi-2.0): Update to 2.0.5.

Change-Id: I9cea7e7d11af5a142066f11a2185eb826570afb5
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
800b09aeef
gnu: stellarium: Update to 23.4. 
* gnu/packages/astronomy.scm (stellarium): Update to 23.4.
[inputs]: Add nlopt.

Change-Id: Id205ad84ff75a687f6c1fdababcf3040c0c55abd
 2024-01-24 22:24:37 +00:00
Ricardo Wurmus
2266754382
gnu: python-pytorch-geometric: Disable one test. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric)[arguments]:
Disable test_gdc as it occasionally fails.

Change-Id: I9d1dc1b68628801ea1bb5a8bdfa17063990748ea
 2024-01-24 22:37:14 +01:00
Efraim Flashner
362ab8bf18
gnu: libdispatch: Update to 5.9.2. 
* gnu/packages/c.scm (libdispatch): Update to 5.9.2.

Change-Id: I119d1de974673aa2c08eb51a7bcaa7ce24aeb0b2
 2024-01-24 22:25:00 +02:00
Efraim Flashner
da3e6aea0a
gnu: range-v3: Update to 0.12.0. 
* gnu/packages/cpp.scm (range-v3): Update to 0.12.0.
[source]: Remove patch.
* gnu/packages/patches/range-v3-build-with-gcc10.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I078937f9aff0da31ede8d472d8739e48bb775c55
 2024-01-24 19:15:30 +02:00
Efraim Flashner
c0f3c0cfd9
gnu: range-v3: Format with 'guix style'. 
* gnu/packages/cpp.scm (range-v3): Format with 'guix style'.

Change-Id: I249443e5e5d0f7ef49e33de4f140246a862101d2
 2024-01-24 19:15:30 +02:00
Efraim Flashner
3643389ba7
gnu: range-v3: Build with newer gcc. 
* gnu/packages/cpp.scm (range-v3)[native-inputs]: Remove gcc-9.

Change-Id: I0411d5db3e3df15c6df0a9a010d311fe1c80015c
 2024-01-24 19:15:25 +02:00
Ricardo Wurmus
c3353791a4
gnu: python-xgboost: Fix build. 
* gnu/packages/machine-learning.scm (python-xgboost)[build-system]: Use
pyproject-build-system.
[arguments]: Move test flags to #:test-flags; disable a few more tests, mostly
to account for a removed dataset; use G-expression; remove custom 'check phase.

Change-Id: I6841a8c159919df85acaa8558248a8775ec5be80
 2024-01-24 17:37:37 +01:00
Andre A. Gomes
2c5faa9ab8
gnu: webkitgtk: Update to 2.42.4 [fixes CVE-2023-42883]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.42.4.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-24 10:47:05 -05:00
Maxim Cournoyer
e479920cfd
gnu: emacs-yasnippet: Update to 0.14.0-0.297546f. 
* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Update to 0.14.0-0.297546f.
Remove fix-tests patch.
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.

Change-Id: I3fda2bb3d879d88f06f9d814b6c8d835d9eafc9f
 2024-01-24 10:42:42 -05:00
Ricardo Wurmus
c797abdd29
gnu: Add python-pytorch-geometric. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric): New variable.

Change-Id: I9a016cda7d167159437724a878e6512c37106fea
 2024-01-24 16:36:37 +01:00
Andreas Enge
e54124ca4d
gnu: singular: Update to 4.3.2p10. 
* gnu/packages/algebra.scm (singular): Update to 4.3.2p10.

Change-Id: I196d31e3f5605dd51385146ce091d63a4e9eb340
 2024-01-24 14:31:16 +01:00
Ricardo Wurmus
db96cc0ba2
gnu: Add r-papaja. 
* gnu/packages/cran.scm (r-papaja): New variable.

Co-authored-by: Lars-Dominik Braun <lars@6xq.net>
Change-Id: Ib5b3a6ff8d52052cf135b2ba36cad3ce295ed6d4
 2024-01-24 13:02:01 +01:00
Ricardo Wurmus
d5e7ad7188
gnu: Add r-tinylabels. 
* gnu/packages/cran.scm (r-tinylabels): New variable.

Change-Id: Ie86de4daaf132cd32f896573be747f35e725258e
 2024-01-24 13:01:52 +01:00
Ricardo Wurmus
90b9cb1298
gnu: Add r-rmdfiltr. 
* gnu/packages/cran.scm (r-rmdfiltr): New variable.

Change-Id: I59b92e9364ca4e74a98b80b6cca1a883ab3caec3
 2024-01-24 13:01:41 +01:00
Ricardo Wurmus
420692482f
gnu: python-chaospy: Ignore deprecation warnings. 
* gnu/packages/statistics.scm (python-chaospy)[arguments]: Add phase
'dont-treat-deprecation-warnings-as-error.

Change-Id: Id06404f9e47f7084fefc2e72032882d49e5b546b
 2024-01-24 12:49:29 +01:00
Andreas Enge
43a82ad545
gnu: pynac: Update to 0.7.29. 
* gnu/packages/sagemath.scm (pynac): Update to 0.7.29.

Change-Id: I3bf2675aea9d8a07fdcfa08471c9d1ca7725e1f7
 2024-01-24 12:31:21 +01:00